The Metabolomics Society—Current State of the Membership and Future Directions
Krista A. Zanetti Robert D. Hall Julian L. Griffin Sastia Putri Reza M. Salek Mark P. Styczynski Fidele Tugizimana Justin J.J. van der Hooft
Metabolites, 2019-5-3
https://doi.org/10.3390/metabo9050089
Sastia Prama Putri
Putri Sastia Prama
ORCID: 0000-0002-3045-4252
The Metabolomics Society—Current State of the Membership and Future Directions 10.3390/metabo9050089
GC-MS based metabolite profiling to monitor ripening-specific metabolites in pineapple (Ananas comosus) 10.3390/metabo10040134
Component Profiling of Soy-Sauce-Like Seasoning Produced from Different Raw Materials 10.3390/metabo10040137
Application of metabolomics for discrimination and sensory predictive modeling of food products 10.4155/9781909453821.13.503
Metabolomics-based profiling of three terminal alkene-producing Jeotgalicoccus spp. during different growth phase 10.1016/j.jbiosc.2018.06.014
Selection of discriminant markers for authentication of asian palm civet coffee (Kopi Luwak): A metabolomics approach 10.1021/jf401819s
Metabolomics approach for determining potential metabolites correlated with sensory attributes of Melaleuca cajuputi essential oil, a promising flavor ingredient 10.1016/j.jbiosc.2019.12.005
Metabolic distance estimation based on principle component analysis of metabolic turnover 10.1016/j.jbiosc.2014.02.014
A metabolomics-based strategy for identification of gene targets for phenotype improvement and its application to 1-butanol tolerance in Saccharomyces cerevisiae 10.1186/s13068-015-0330-z
Quantitative target analysis and kinetic profiling of acyl-CoAs reveal the rate-limiting step in cyanobacterial 1-butanol production 10.1007/s11306-015-0940-2
Gas chromatography coupled with mass spectrometry-based metabolomics for the classification of tempe from different regions and production processes in Indonesia 10.1016/j.jbiosc.2018.03.020
Metabolomics analysis reveals global metabolic changes in the evolved E. Coli strain with improved growth and 1-butanol production in minimal medium 10.3390/metabo10050192
Untargeted metabolomics analysis of eggplant (Solanum melongena L.) fruit and its correlation to fruit morphologies 10.3390/metabo8030049
Tailor-made poly-γ-glutamic acid production 10.1016/j.ymben.2019.07.009
Upside-down but headed in the right direction: Review of the highly versatile Cassiopea xamachana system 10.3389/fevo.2018.00035
HPLC fingerprinting coupled with linear discriminant analysis for the detection of adulteration in Orthosiphon aristatus 10.1080/10826076.2019.1629956
Orthogonal partial least squares/projections to latent structures regression-based metabolomics approach for identification of gene targets for improvement of 1-butanol production in Escherichia coli 10.1016/j.jbiosc.2017.05.015
Application of gas chromatography/flame ionization detector-based metabolite fingerprinting for authentication of Asian palm civet coffee (Kopi Luwak) 10.1016/j.jbiosc.2015.03.005
Current metabolomics: Practical applications 10.1016/j.jbiosc.2012.12.007
Gas chromatography-mass spectrometry based metabolic profiling for the identification of discrimination markers of Angelicae Radix and its application to gas chromatography-flame ionization detector system 10.1016/j.jbiosc.2012.03.022
Farinomalein, a maleimide-bearing compound from the entomopathogenic fungus Paecilomyces farinosus 10.1021/np9002806
Expression analysis of 1-aminocyclopropane-1-carboxylic acid oxidase genes in Chitosan-Coated Banana 10.4308/hjb.25.1.18
Quantification of coffee blends for authentication of Asian palm civet coffee (Kopi Luwak) via metabolomics: A proof of concept 10.1016/j.jbiosc.2015.12.008
Metabolomics continues to expand: highlights from the 2015 metabolomics conference 10.1007/s11306-015-0846-z
Directed strain evolution restructures metabolism for 1-butanol production in minimal media 10.1016/j.ymben.2018.08.004
Identifying metabolic elements that contribute to productivity of 1-propanol bioproduction using metabolomic analysis 10.1007/s11306-018-1386-0
Metabolomics-driven approach to solving a CoA imbalance for improved 1-butanol production in Escherichia coli 10.1016/j.ymben.2017.04.003
Production of antioomycete compounds active against the phytopathogens Phytophthora sojae and Aphanomyces cochlioides by clavicipitoid entomopathogenic fungi 10.1016/j.jbiosc.2013.10.014
GC/MS based metabolite profiling of Indonesian specialty coffee from different species and geographical origin 10.1007/s11306-019-1591-5
Iterative cycle of widely targeted metabolic profiling for the improvement of 1-butanol titer and productivity in Synechococcus elongatus 10.1186/s13068-018-1187-8
Online monitoring of the respiratory quotient reveals metabolic phases during microaerobic 2,3-butanediol production with Bacillus licheniformis 10.1002/elsc.201900121
Accumulation of sugars and nucleosides in response to high salt and butanol stress in 1-butanol producing Synechococcus elongatus 10.1016/j.jbiosc.2019.08.015
Metabolome analysis revealed the knockout of glyoxylate shunt as an effective strategy for improvement of 1-butanol production in transgenic Escherichia coli 10.1016/j.jbiosc.2018.08.013
Metabolic repair through emergence of new pathways in Escherichia coli 10.1038/s41589-018-0149-6
Ophiosetin, a new tetramic acid derivative from the mycopathogenic fungus Elaphocordyceps ophioglossoides 10.1038/ja.2010.8
Identification of Key Metabolites in Poly-γ-Glutamic Acid Production by Tuning γ-PGA Synthetase Expression 10.3389/fbioe.2020.00038
Comparison of Isomerase and Weimberg Pathway for γ-PGA Production From Xylose by Engineered Bacillus subtilis 10.3389/fbioe.2019.00476
GC/MS-based metabolic profiling for the evaluation of solid state fermentation to improve quality of Arabica coffee beans 10.1007/s11306-020-01678-y
Metabolite profiling of whiteleg shrimp Litopenaeus vannamei from super-intensive culture in closed aquaculture systems: a recirculating aquaculture system and a hybrid zero water discharge–recirculating aquaculture system 10.1007/s11306-020-01675-1
Comparison between the potential of tempe flour made from germinated and nongerminated soybeans in preventing diabetes mellitus 10.4308/hjb.27.1.16
A combination of simultaneous quantification of four triterpenes and fingerprint analysis using HPLC for rapid identification of Centella asiatica from its related plants and classification based on cultivation ages 10.1016/j.indcrop.2018.05.062
Metabolic profiling of Garcinia mangostana (mangosteen) based on ripening stages 10.1016/j.jbiosc.2017.08.013
Dataset of Cavendish banana transcriptome in response to chitosan coating application 10.1016/j.dib.2020.105337
A metabolomics-based approach for the evaluation of off-tree ripening conditions and different postharvest treatments in mangosteen (Garcinia mangostana) 10.1007/s11306-019-1526-1
Current metabolomics: Technological advances 10.1016/j.jbiosc.2013.01.004
Random sample consensus combined with partial least squares regression (RANSAC-PLS) for microbial metabolomics data mining and phenotype improvement 10.1016/j.jbiosc.2016.01.007
Metabolomics-Based Study of the Effect of Raw Materials to the End Product of Tempe—An Indonesian Fermented Soybean 10.3390/metabo10090367
Metabolomic Analysis of Response to Nitrogen-Limiting Conditions in Yarrowia spp. 10.3390/metabo11010016
Justin van der Hooft
van der Hooft Justin / Justin J.J. van der Hooft
ORCID: 0000-0002-9340-5511
Structural elucidation of low abundant metabolites in complex sample matrices 10.1007/s11306-013-0519-8
Non-smoky GLYCOSYLTRANSFERASE1 prevents the release of smoky aroma from tomato fruit 10.1105/tpc.113.114231
Automatic chemical structure annotation of an LC-MSn based metabolic profile from green tea 10.1021/ac400861a
Substructure-based annotation of high-resolution multistage MSn spectral trees 10.1002/rcm.6364
Structural annotation and elucidation of conjugated phenolic compounds in black, green, and white tea extracts 10.1021/jf300297y
Structural elucidation and quantification of phenolic conjugates present in human urine after tea intake 10.1021/ac3017339
Spectral trees as a robust annotation tool in LC-MS based metabolomics 10.1007/s11306-011-0363-7
Metabolite identification using automated comparison of high-resolution multistage mass spectral trees 10.1021/ac2034216
Inhibitory activity of plumbagin produced by Drosera intermedia on food spoilage fungi 10.1002/jsfa.5522
A strategy for fast structural elucidation of metabolites in small volume plant extracts using automated MS-guided LC-MS-SPE-NMR 10.1002/mrc.2833
Thermal diffusivity of periderm from tomatoes of different maturity stages as determined by the concept of the frequency-domain open photoacoustic cell 10.1063/1.3530735
Polyphenol identification based on systematic and robust high-resolution accurate mass spectrometry fragmentation 10.1021/ac102546x
Iridoid and caffeoyl phenylethanoid glycosides of the endangered carnivorous plant Pinguicula lusitanica L. (Lentibulariaceae) 10.1016/j.bse.2009.05.003
Topic modeling for untargeted substructure exploration in metabolomics 10.1073/pnas.1608041113
Propagating annotations of molecular networks using in silico fragmentation 10.1371/journal.pcbi.1006089
Did a plant-herbivore arms race drive chemical diversity in Euphorbia? 10.1101/323014
Automatic Compound Annotation from Mass Spectrometry Data Using MAGMa. 10.5702/massspectrometry.S0033
Interactions of blacktea polyphenols with human gut microbiota: implications for gut and cardiovascular health 10.3945/ajcn.113.058263
Identification of a drimenol synthase and drimenol oxidase from Persicaria hydropiper, involved in the biosynthesis of insect deterrent drimanes 10.1111/tpj.13527
Enhanced Acylcarnitine Annotation in High-Resolution Mass Spectrometry Data: Fragmentation Analysis for the Classification and Annotation of Acylcarnitines 10.3389/fbioe.2015.00026
Rapid and sustained systemic circulation of conjugated gut microbiol catabolites after single-dose black tea extract consumption 10.1021/pr5001253
In Silico Prediction and Automatic LC–MSn Annotation of Green Tea Metabolites in Urine 10.1021/ac403875b
Unexpected differential metabolic responses of Campylobacter jejuni to the abundant presence of glutamate and fucose 10.1007/s11306-018-1438-5
Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1101/463620
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra 10.1101/491506
Accelerating metabolite identification in natural product research: toward an ideal combination of LC-HRMS/MS and NMR profiling, in silico databases and chemometrics 10.1021/acs.analchem.8b05112
Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages 10.1101/347716
Absorption, metabolism, distribution and excretion of (−)-epicatechin: A review of recent findings https://doi.org/10.1016/j.mam.2017.11.002
Metabolite Identification in Complex Mixtures Using Nuclear Magnetic Resonance Spectroscopy 10.1007/978-3-319-28275-6_6-2
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry 10.1093/bioinformatics/btx582
A comprehensive evaluation of the [2-14C](–)-epicatechin metabolome in rats https://doi.org/10.1016/j.freeradbiomed.2016.08.001
The food metabolome: a window over dietary exposure 10.3945/ajcn.113.076133
Human studies on the absorption, distribution, metabolism, and excretion of tea polyphenols 10.3945/ajcn.113.058958
Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics 10.1021/acs.analchem.7b01391
A community-driven paired data platform to accelerate natural product mining by combining structural information from genomes and metabolomes 10.18174/FAIRdata2018.16286
Implementations of the chemical structural and compositional similarity metric in R and Python 10.1101/546150
Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1111/tpj.14292
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters 10.1186/s13104-019-4222-3
The Metabolomics Society—Current State of the Membership and Future Directions 10.3390/metabo9050089
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra 10.1039/C8FD00235E
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools 10.1101/654459
Substantial extracellular metabolic differences found between phylogenetically closely related probiotic and pathogenic strains of Escherichia coli 10.3389/fmicb.2019.00252
Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia l. 10.3389/fpls.2019.00846
Molnetenhancer: Enhanced molecular networks by integrating metabolome mining and annotation tools 10.3390/metabo9070144
In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics 10.3390/metabo9100219
MIBiG 2.0: a repository for biosynthetic gene clusters of known function 10.1093/nar/gkz882
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages 10.1016/j.foodchem.2019.125290
The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery 10.1021/acscentsci.9b00806
Mass spectrometry searches using MASST 10.1038/s41587-019-0375-9
Assessing specialized metabolite diversity of Alnus species by a digitized LC–MS/MS data analysis workflow 10.1016/j.phytochem.2020.112292
Microbiome-derived carnitine mimics as previously unknown mediators of gut-brain axis communication 10.1126/sciadv.aax6328
Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree 10.1101/2020.05.04.077636
Linking genomics and metabolomics to chart specialized metabolic diversity 10.1039/D0CS00162G
Reproducible molecular networking of untargeted mass spectrometry data using GNPS 10.1038/s41596-020-0317-5
Decomposing metabolite set activity levels with PALS 10.1101/2020.06.07.138974
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions 10.1101/2020.06.12.148205
Phenylpropane as an Alternative Dearomatizing Unit of Indoles: Discovery of Inaequalisines A and B Using Substructure-Informed Molecular Networking 10.1021/acs.orglett.0c02153
matchms - processing and similarity evaluation of mass spectrometry data 10.1101/2020.08.06.239244
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships 10.1101/2020.08.11.245928
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters 10.1101/2020.08.17.240838
matchms - processing and similarity evaluation of mass spectrometry data. 10.21105/joss.02411
ReDU: a framework to find and reanalyze public mass spectrometry data 10.1038/s41592-020-0916-7
Feature-based molecular networking in the GNPS analysis environment 10.1038/s41592-020-0933-6
Rapid Development of Improved Data-dependent Acquisition Strategies 10.1101/2020.09.11.293092
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree 10.1038/s41589-020-00677-3
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data 10.1038/s41587-020-0700-3
The ant fungus garden acts as an external digestive system 10.1101/2020.11.18.389361
BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes 10.1101/2020.12.14.422671
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters 10.1093/gigascience/giaa154
Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs 10.1371/journal.ppat.1008932
Comparative Metabologenomics Analysis of Polar Actinomycetes 10.3390/md19020103
Ranking Metabolite Sets by Their Activity Levels 10.3390/metabo11020103
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships 10.1371/journal.pcbi.1008724
Rapid Development of Improved Data-Dependent Acquisition Strategies 10.1021/acs.analchem.0c03895
MS2DeepScore - a novel deep learning similarity measure for mass fragmentation spectrum comparisons 10.1101/2021.04.18.440324
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions 10.1371/journal.pcbi.1008920
Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview 10.3390/metabo11070445
Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden 10.1128/mSystems.00601-21
Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery 10.1128/mSystems.00726-21
ROBERT HALL
HALL ROBERT
ORCID: 0000-0002-5786-768X
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Calcium Imaging of GPCR Activation Using Arrays of Reverse Transfected HEK293 Cells in a Microfluidic System 10.3390/s18020602
The Metabolomics Society—Current State of the Membership and Future Directions 10.3390/metabo9050089
Prunus Fruit Juices 10.1002/9781118929346.ch3
Plant Metabolomics in a Nutshell: Potential and Future Challenges 10.1002/9781444339956.ch1
Metabolomics of a Model Fruit: Tomato 10.1002/9781444339956.ch5
Annual plant reviews volume 43: Biology of plant metabolomics 10.1002/9781444339956
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Metabolome analysis of the interaction between perennial ryegrass (Lolium perenne) and the fungal endophyte Neotyphodium lolii 10.3920/978-90-8686-555-0
Strategies to Optimize the Flavonoid Content of Tomato Fruit 10.1002/9781444323375.ch5
Crops and Tasty, Nutritious Food - How Can Metabolomics Help? 10.1002/9781444339956.ch7
A multidisciplinary phenotyping and genotyping analysis of a mapping population enables quality to be combined with yield in rice 10.3389/fmolb.2017.00032
A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles 10.1104/pp.105.068130
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Asymmetric somatic cell hybridization in plants - I. The early effects of (sub)lethal doses of UV and gamma radiation on the cell physiology and DNA integrity of cultured sugarbeet (Beta vulgaris L.) protoplasts 10.1007/BF00283851
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Plant metabolomics strategies based upon quadrupole time of flight mass spectrometry (QTOF-MS) 10.1007/3-540-29782-0_3
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Delving deeper into technological innovations to understand differences in rice quality 10.1186/s12284-015-0043-8
Accurate mass error correction in liquid chromatography time-of-flight mass spectrometry based metabolomics 10.1007/s11306-008-0108-4
Sour cherry (prunus cerasus L.) anthocyanins: Effects of juice processing on phenolic compounds and bioavailability 10.17660/ActaHortic.2014.1017.47
Sucrose prevents up-regulation of senescence-associated genes in carnation petals 10.1093/jxb/erm076
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Changes in sour cherry (Prunus cerasus L.) antioxidants during nectar processing and in vitro gastrointestinal digestion 10.1016/j.jff.2013.05.008
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Asymmetric protoplast fusion aimed at intraspecific transfer of cytoplasmic male sterility (CMS) in Lolium perenne L. 10.1007/BF00224182
Effect of dietary fiber (inulin) addition on phenolics and in vitro bioaccessibility of tomato sauce 10.1016/j.foodres.2017.12.050
Metabolite identification: are you sure? And how do your peers gauge your confidence? 10.1007/s11306-014-0656-8
The light-hyperresponsive high pigment-2dg mutation of tomato: Alterations in the fruit metabolome 10.1111/j.1469-8137.2005.01362.x
Laser ablation electrospray ionization-mass spectrometry imaging (LAESI-MS) for spatially resolved plant metabolomics 10.1007/978-1-4939-7819-9_18
Metabolomics in melon: A new opportunity for aroma analysis 10.1016/j.phytochem.2013.12.010
De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae 10.1186/1475-2859-11-155
High yields of cytoplasts from protoplasts of Lolium perenne and Beta vulgaris using gradient centrifugation 10.1007/BF00036228
The time is right to focus on model organism metabolomes 10.3390/metabo6010008
Comparison of micro-array profiling in senescing iris and carnation flowers 10.17660/ActaHortic.2005.669.17
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The influence of intracellular pools of phenylalanine derivatives upon the synthesis of capsaicin by immobilized cell cultures of the chilli pepper, Capsicum frutescens 10.1007/BF00194517
MSClust: A tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data 10.1007/s11306-011-0368-2
The effect of exogenously-applied phytohormones on gene transfer efficiency in sugarbeet (Beta vulgaris L.) 10.1016/0168-9452(96)04357-9
Control of anthocyanin and non-flavonoid compounds by anthocyanin-regulating MYB and bHLH transcription factors in Nicotiana benthamiana leaves 10.3389/fpls.2014.00519
Temporal and spatial heterogeneity in the accumulation of anthocyanins in cell cultures of Catharanthus roseus (L.) G. Don 10.1093/jxb/37.1.48
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Metabolic engineering of flavonoids in tomato (Solanum lycopersicum): The potential for metabolomics 10.1007/s11306-007-0074-2
Petioles as the tissue source for isolation and culture of Beta vulgaris and B. maritima protoplasts 10.1016/0168-9452(93)90082-B
A non-directed approach to the differential analysis of multiple LC-MS-derived metabolic profiles 10.1007/s11306-005-4432-7
The impact of the product generation life cycle on knowledge valorization at the public private research partnership, the centre for biosystems genomics 10.1016/j.njas.2013.07.002
Comprehensive metabolomics to evaluate the impact of industrial processing on the phytochemical composition of vegetable purees 10.1016/j.foodchem.2014.07.076
Antioxidants in raspberry: On-line analysis links antioxidant activity to a diversity of individual metabolites 10.1021/jf047880b
Mass spectrometry-based metabolomics of volatiles as a new tool for understanding aroma and flavour chemistry in processed food products 10.1007/s11306-019-1493-6
The use of an automated cell tracking system to identify specific cell types competent for regeneration and transformation 10.1007/BF02822769
Correlation of Rutin Accumulation with 3-O-Glucosyl Transferase and Phenylalanine Ammonia-lyase Activities During the Ripening of Tomato Fruit 10.1007/s11130-012-0321-1
Effect of gamma-irradiation on protoplast viability and chloroplast DNA damage in Lycopersicon peruvianum with respect to donor-recipient protoplast fusion 10.1016/0098-8472(92)90008-P
Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors 10.1038/nbt.1506
Tuber on a chip: Differential gene expression during potato tuber development 10.1111/j.1467-7652.2005.00141.x
A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from tomato fruit discovered using a metabolic data fusion approach 10.1104/pp.109.146670
Changes in antioxidant and metabolite profiles during production of tomato paste 10.1021/jf072990e
Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment 10.1007/s11306-012-0429-1
Practical applications of metabolomics in plant biology 10.1007/978-1-61779-594-7_1
Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus 10.1128/AEM.02675-08
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Computer-assisted identification of protoplasts responsible for rare division events reveals guard-cell totipotency 10.1104/pp.107.4.1379
The effect of industrial food processing on potentially health-beneficial tomato antioxidants 10.1080/10408390903001503
Solid phase micro-extraction gc-ms analysis of natural volatile components in melon and rice 10.1007/978-1-61779-594-7_6
High-performance liquid chromatography-mass spectrometry analysis of plant metabolites in brassicaceae 10.1007/978-1-61779-594-7_8
Use of new generation single nucleotide polymorphism genotyping for rapid development of near-isogenic lines in rice 10.2135/cropsci2011.02.0103
Metabolomics meets functional assays: coupling LC–MS and microfluidic cell-based receptor-ligand analyses 10.1007/s11306-016-1057-y
Potential of metabolomics as a functional genomics tool 10.1016/j.tplants.2004.07.004
Towards prevention of allergy through an integrated multidisciplinary approach 10.1016/S1573-5214(05)80009-0
Automated assembly of species metabolomes through data submission into a public repository 10.1093/gigascience/gix062
Parameter estimation in tree graph metabolic networks 10.7717/peerj.2417
Plant metabolomics is not ripe for environmental risk assessment 10.1016/j.tibtech.2014.05.002
Tissue specialization at the metabolite level is perceived during the development of tomato fruit 10.1093/jxb/erm271
Evidence for a hydrogen-sink mechanism of (+)catechin-mediated emission reduction of the ruminant greenhouse gas methane 10.1007/s11306-013-0554-5
Industrial processing versus home processing of tomato sauce: Effects on phenolics, flavonoids and in vitro bioaccessibility of antioxidants 10.1016/j.foodchem.2016.09.201
Diversity of global rice markets and the science required for consumer-targeted rice breeding 10.1371/journal.pone.0085106
Arabidopsis myrosinases link the glucosinolate-myrosinase system and the cuticle 10.1038/srep38990
Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics 10.1111/j.1469-8137.2010.03626.x
Boosting beneficial phytochemicals in vegetable crop plants 10.1079/PAVSNNR20083025
Metabolomics reveals organ-specific metabolic rearrangements during early tomato seedling development 10.1007/s11306-014-0625-2
Changes in polyphenol content during production of grape juice concentrate 10.1016/j.foodchem.2013.01.023
Industrial processing effects on phenolic compounds in sour cherry (Prunus cerasus L.) fruit 10.1016/j.foodres.2013.04.009
Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality characteristics 10.1007/s11306-015-0925-1
DNA radiation damage and asymmetric somatic hybridization: Is UV a potential substitute or supplement to ionising radiation in fusion experiments? 10.1111/j.1399-3054.1992.tb04741.x
Transcription factor-mediated control of anthocyanin biosynthesis in vegetative tissues 10.1104/pp.17.01662
Investigating the transport dynamics of anthocyanins from unprocessed fruit and processed fruit juice from sour cherry (Prunus cerasus L.) across intestinal epithelial cells 10.1021/jf4032519
A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties 10.1007/s11306-011-0374-4
Identification and dietary relevance of antioxidants from raspberry 10.1002/biof.5520230404
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Improved batch correction in untargeted MS-based metabolomics 10.1007/s11306-016-1015-8
Non-smoky GLYCOSYLTRANSFERASE1 prevents the release of smoky aroma from tomato fruit 10.1105/tpc.113.114231
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The Flavonoid Pathway in Tomato Seedlings: Transcript Abundance and the Modeling of Metabolite Dynamics 10.1371/journal.pone.0068960
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An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato 10.1111/tpj.12664
Plant molecular stress responses face climate change 10.1016/j.tplants.2010.08.002
Plant metabolomics: From holistic hope, to hype, to hot topic 10.1111/j.1469-8137.2005.01632.x
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Improvement of protoplast culture protocols for Beta vulgaris L. (sugar beet) 10.1007/BF00237431
Procyanidins in fruit from Sour cherry (Prunus cerasus) differ strongly in chainlength from those in Laurel cherry (Prunus lauracerasus) and Cornelian cherry (Cornus mas) 10.3233/BR-2011-015
Identification of Bioactive Phytochemicals in Mulberries 10.3390/metabo10010007
Green and White Asparagus (Asparagus officinalis): A Source of Developmental, Chemical and Urinary Intrigue 10.3390/metabo10010017
Comparative Metabolomics and Molecular Phylogenetics of Melon (Cucumis melo, Cucurbitaceae) Biodiversity 10.3390/metabo10030121
Maltodextrin improves physical properties and volatile compound retention of spray-dried asparagus concentrate 10.1016/j.lwt.2021.111058
Stir bar sorptive extraction of aroma compounds in soy sauce: Revealing the chemical diversity 10.1016/j.foodres.2021.110348
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Reza Salek
Salek Reza / salek / Reza M Salek
ORCID: 0000-0001-8604-1732
Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer. 10.3389/frma.2021.689264
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A New Pipeline for the Normalization and Pooling of Metabolomics Data 10.3390/metabo11090631
The MetaboLights repository: Curation challenges in metabolomics 10.1093/database/bat029
NMR-based metabolomics in human disease diagnosis: Applications, limitations, and recommendations 10.1007/s11306-013-0524-y
MetaboLights - An open-access general-purpose repository for metabolomics studies and associated meta-data 10.1093/nar/gks1004
Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study 10.1186/1471-2164-13-334
Metabolomics of human breast cancer: New approaches for tumor typing and biomarker discovery 10.1186/gm336
MetaboLights: Towards a new COSMOS of metabolomics data management 10.1007/s11306-012-0462-0
The study of mammalian metabolism through NMR-based metabolomics 10.1016/B978-0-12-385118-5.00017-7
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A metabolomic study of the CRND8 transgenic mouse model of Alzheimer's disease 10.1016/j.neuint.2010.04.001
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A metabolomic study of brain tissues from aged mice with low expression of the vesicular monoamine transporter 2 (VMAT2) gene 10.1007/s11064-007-9542-3
Metabolomic investigation of CLN6 neuronal ceroid lipofuscinosis in affected South Hampshire sheep 10.1002/jnr.21343
Metabolomic applications to neuroscience: More challenges than chances? 10.1586/14789450.4.4.435
A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human 10.1152/physiolgenomics.00194.2006
Getting the right answers: Understanding metabolomics challenges 10.1586/14737159.2015.974562
Standardizing the experimental conditions for using urine in NMR-based metabolomic studies with a particular focus on diagnostic studies: a review 10.1007/s11306-014-0746-7
Genome-Wide Association Study of Metabolic Traits Reveals Novel Gene-Metabolite-Disease Links 10.1371/journal.pgen.1004132
Meeting New Challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany S. Orchard et al. 10.1002/pmic.201470164
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The mzTab data exchange format: Communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience 10.1074/mcp.O113.036681
Biomarkers of food intake and metabolite differences between plasma and red blood cell matrices; A human metabolomic profile approach 10.1039/c3mb25554a
1 H MAS NMR Spectroscopy of Tissues 10.1016/B978-0-12-374413-5.00037-3
Metabolomics in neuroscience and neurology 10.1079/9781780642000.0020
Curation of comprehensive resource for metabolomics experiment and metabolite reference compound within the MetaboLights database 10.13140/2.1.2540.1924
Neuroscience and Metabolomics 10.1093/med/9780199855452.003.0012
The role of reporting standards for metabolite annotation and identification in metabolomic studies 10.1186/2047-217x-2-13
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Metabolomics continues to expand: highlights from the 2015 metabolomics conference 10.1007/s11306-015-0846-z
Embedding standards in metabolomics: the Metabolomics Society data standards task group 10.1007/s11306-015-0821-8
Dolphin 1D: Improving Automation of Targeted Metabolomics in Multi-matrix Datasets of $$^1$$ 1 H-NMR Spectra 10.1007/978-3-319-19776-0_7
Mass spectral databases for LC/MS and GC/MS-based metabolomics: state of the field and future prospects 10.1016/j.trac.2015.09.005
Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access 10.1007/s11306-015-0822-7
Behavioural and molecular endophenotypes in psychotic disorders reveal heritable abnormalities in glutamatergic neurotransmission. 10.1038/tp.2015.26
Metabolomics: An introduction 10.6019/TOL.MBS.2014.00001.1
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mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data. 10.1093/bioinformatics/btx169
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Discovering and linking public omics data sets using the Omics Discovery Index. 10.1038/nbt.3790
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Automated assembly of species metabolomes through data submission into a public repository 10.1093/gigascience/gix062
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A decade after the metabolomics standards initiative it's time for a revision 10.1038/sdata.2017.138
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Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy 10.17863/cam.8310
Navigating freely-available software tools for metabolomics analysis 10.17863/cam.13427
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Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas 10.3390/metabo8030051
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Progress in Standardization of Metabolic Phenotyping Data 10.1016/b978-0-12-812293-8.00012-8
Expanding the use of spectral libraries in proteomics. 10.1021/acs.jproteome.8b00485
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud 10.1101/409151
Interoperable and scalable data analysis with microservices: Applications in Metabolomics 10.1101/213603
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A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics 10.3390/metabo9030043
The Metabolomics Society—Current State of the Membership and Future Directions 10.3390/metabo9050089
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Metabolomics in early detection and prognosis of acute coronary syndrome. 10.1016/j.cca.2019.03.1632
Interoperable and scalable data analysis with microservices: Applications in Metabolomics. 10.1093/bioinformatics/btz160
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A Method to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics 10.20944/preprints201901.0246.v1
Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud 10.1101/488643
The Metabolomics Society-Current State of the Membership and Future Directions. 10.17863/cam.41860
Use cases, best practice and reporting standards for metabolomics in regulatory toxicology. 10.1038/s41467-019-10900-y
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The ABRF Metabolomics Research Group 2016 Exploratory Study: Investigation of Data Analysis Methods for Untargeted Metabolomics 10.3390/metabo10040128
Metabolomics - the stethoscope for the 21st century. 10.1159/000513545
Information Retrieval using Machine Learning for Biomarker Curation in the Exposome-Explorer 10.1101/2020.12.20.423685
Metabolomics 10.1201/9781315370583
Data Sharing and Standards 10.1201/9781315370583-10
Nuclear Magnetic Resonance Spectroscopy Data Processing 10.1201/9781315370583-5
Measurement Technologies 10.1201/9781315370583-3
Overview of Metabolomics 10.1201/9781315370583-1
1 H MAS NMR Spectroscopy of Tissues http://dx.doi.org/10.1016/b978-0-12-374413-5.00037-3
A Metabolomic Study of Brain Tissues from Aged Mice with Low Expression of the Vesicular Monoamine Transporter 2 (VMAT2) Gene http://dx.doi.org/10.1007/s11064-007-9542-3
A Metadata description of the data in "A metabolomic comparison of urinary changes in type 2 diabetes in mouse, rat, and human." http://dx.doi.org/10.1186/1756-0500-4-272
A metabolomic study of the CRND8 transgenic mouse model of Alzheimer's disease http://dx.doi.org/10.1016/j.neuint.2010.04.001
Biomarkers of food intake and metabolite differences between plasma and red blood cell matrices; a human metabolomic profile approach http://dx.doi.org/10.1039/c3mb25554a
Dissemination of metabolomics results: role of MetaboLights and COSMOS http://dx.doi.org/10.1186/2047-217x-2-8
MetaboLights: towards a new COSMOS of metabolomics data management http://dx.doi.org/10.1007/s11306-012-0462-0
Metabolomic applications to neuroscience: more challenges than chances? http://dx.doi.org/10.1586/14789450.4.4.435
Benchmarking feature quality assurance strategies for non-targeted metabolomics 10.1101/2021.09.09.459600
Cross-Platform Evaluation of Commercially Targeted and Untargeted Metabolomics Approaches to Optimize the Investigation of Psychiatric Disease 10.3390/metabo11090609
Summary of the Sussex-Huawei locomotion-transportation recognition challenge
Observation of a manifold in the chaotic phase space of an asymmetric optical microcavity
Localized temporal variation of Earth's inner-core boundary from high-quality waveform doublets
Off-axis multi-wavelength dispersion controlling metalens for multi-color imaging
Impact of United States political sanctions on international collaborations and research in Iran