Paperbase

Rupak Pathak

Pathak Rupak

ORCID: 0000-0002-6239-301X

http://pharmcollege.uams.edu/about/contact-us/directory/faculty-member-rupak-pathak/

The Vitamin E Analog Gamma-Tocotrienol (GT3) and Statins Synergistically Up-Regulate Endothelial Thrombomodulin (TM) 10.3390/ijms17111937

Inter-Strain Differences in LINE-1 DNA Methylation in the Mouse Hematopoietic System in Response to Exposure to Ionizing Radiation 10.3390/ijms18071430

Cebpd Is Essential for Gamma-Tocotrienol Mediated Protection against Radiation-Induced Hematopoietic and Intestinal Injury 10.3390/antiox7040055

Gamma-Tocotrienol Protects the Intestine from Radiation Potentially by Accelerating Mesenchymal Immune Cell Recovery 10.3390/antiox8030057

NZO/HlLtJ as a novel model for the studies on the role of metabolic syndrome in acute radiation toxicity 10.1080/09553002.2018.1547437

Identification of novel breakpoints for locus- and region-specific translocations in 293 cells by molecular cytogenetics before and after irradiation 10.1038/s41598-019-47002-0

Fractionated radiation suppresses Kruppel-like factor 2 pathway to a greater extent than by single exposure to the same total dose 10.1038/s41598-020-64672-3

Dietary Methionine Deficiency Enhances Genetic Instability in Murine Immune Cells 10.3390/ijms22052378

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540

Marjan Boerma

Boerma Marjan

ORCID: 0000-0003-2249-5203

Identification of Plasma Lipidome Changes Associated with Low Dose Space-Type Radiation Exposure in a Murine Model 10.3390/metabo10060252

Multi-Omic Analysis Reveals Different Effects of Sulforaphane on the Microbiome and Metabolome in Old Compared to Young Mice 10.3390/microorganisms8101500

NZO/HlLtJ as a novel model for the studies on the role of metabolic syndrome in acute radiation toxicity 10.1080/09553002.2018.1547437

Advances in Preclinical Research Models of Radiation-Induced Cardiac Toxicity 10.3390/cancers12020415

Late Health Effects of Partial Body Irradiation Injury in a Minipig Model Are Associated with Changes in Systemic and Cardiac IGF-1 Signaling 10.3390/ijms22063286

Manned space travel: from a race between nations to a race against the environmental stressors beyond earth 10.1080/26896583.2021.1899719

All for one, though not one for all: team players in normal tissue radiobiology 10.1080/09553002.2021.1941383

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540

Isabelle R. Miousse

Miousse Isabelle R.

ORCID: 0000-0001-6543-3219

https://biochemistry.uams.edu/faculty/primary-faculty/miousse/

The Fine LINE: Methylation Drawing the Cancer Landscape 10.1155/2015/131547

A priming dose of protons alters the early cardiac cellular and molecular response to 56 Fe irradiation 10.1016/j.lssr.2015.12.001

Inter-Strain Differences in LINE-1 DNA Methylation in the Mouse Hematopoietic System in Response to Exposure to Ionizing Radiation 10.3390/ijms18071430

MicroRNAs as biomarkers for liver injury: Current knowledge, challenges and future prospects 10.1016/j.fct.2017.10.026

Short-term exposure to engineered nanomaterials affects cellular epigenome 10.3109/17435390.2015.1025115

One-carbon metabolism and ionizing radiation: a multifaceted interaction 10.1515/bmc-2017-0003

Pediatric Exposures to Ionizing Radiation: Carcinogenic Considerations 10.3390/ijerph13111057

Analysis of the Ambient Particulate Matter-induced Chromosomal Aberrations Using an In Vitro System 10.3791/54969

Interactions between TonB fromEscherichia coliand the Periplasmic Protein FhuD 10.1074/jbc.m607611200

118. Identification of a novel lysosomal membrane protein mutated in the Cbl F defect of vitamin B12 metabolism 10.1016/j.ymgme.2008.11.119

Effects of Laser Printer–Emitted Engineered Nanoparticles on Cytotoxicity, Chemokine Expression, Reactive Oxygen Species, DNA Methylation, and DNA Damage: A Comprehensive in Vitro Analysis in Human Small Airway Epithelial Cells, Macrophages, and Lymphoblasts 10.1289/ehp.1409582

In VitroToxicity and Epigenotoxicity of Different Types of Ambient Particulate Matter 10.1093/toxsci/kfv200

Densely ionizing radiation affects DNA methylation of selective LINE-1 elements 10.1016/j.envres.2016.06.043

Long-term epigenetic effects of exposure to low doses of 56Fe in the mouse lung 10.1093/jrr/rru010

Epigenetic alterations induced by ambient particulate matter in mouse macrophages 10.1002/em.21855

Trace element status and zinc homeostasis differ in breast and formula-fed piglets 10.1177/1535370214547162

Novel splice site mutations and a large deletion in three patients with the cblF inborn error of vitamin B12 metabolism 10.1016/j.ymgme.2011.01.002

Safety assessment of the dietary supplement OxyELITE™ Pro (New Formula) in inbred and outbred mouse strains 10.1016/j.fct.2017.08.025

Clinical, Biochemical, and Molecular Presentation in a Patient with the cblD-Homocystinuria Inborn Error of Cobalamin Metabolism 10.1007/8904_2014_340

Mammary gland morphology and gene expression signature of weanling male and female rats following exposure to exogenous estradiol 10.1177/1535370213497322

Exposure to Low-Dose56Fe-Ion Radiation Induces Long-Term Epigenetic Alterations in Mouse Bone Marrow Hematopoietic Progenitor and Stem Cells 10.1667/rr13580.1

Effects of intratracheally instilled laser printer-emitted engineered nanoparticles in a mouse model: A case study of toxicological implications from nanomaterials released during consumer use 10.1016/j.impact.2015.12.001

DNA Methylation in Radiation-Induced Carcinogenesis: Experimental Evidence and Clinical Perspectives 10.1615/critrevoncog.2018025687

Clinical and Molecular Heterogeneity in Patients with the CblD Inborn Error of Cobalamin Metabolism 10.1016/j.jpeds.2008.10.043

Modulation of Dietary Methionine Intake Elicits Potent, yet Distinct, Anticancer Effects on Primary Versus Metastatic Tumors 10.1093/carcin/bgy085

In vivoepigenetic effects induced by engineered nanomaterials: A case study of copper oxide and laser printer-emitted engineered nanoparticles 10.3109/17435390.2015.1108473

Dose-response analysis of epigenetic, metabolic, and apical endpoints after short-term exposure to experimental hepatotoxicants 10.1016/j.fct.2017.05.013

Response of transposable elements to environmental stressors 10.1016/j.mrrev.2015.05.003

Identification of a putative lysosomal cobalamin exporter altered in the cblF defect of vitamin B12 metabolism 10.1038/ng.294

Importance of investigating epigenetic alterations for industry and regulators: An appraisal of current efforts by the Health and Environmental Sciences Institute 10.1016/j.tox.2015.06.009

Feeding soy protein isolate and treatment with estradiol have different effects on mammary gland morphology and gene expression in weanling male and female rats 10.1152/physiolgenomics.00096.2013

Effects of ionizing radiation on DNA methylation: from experimental biology to clinical applications 10.1080/09553002.2017.1287454

Mutations in ABCD4 cause a new inborn error of vitamin B12 metabolism 10.1038/ng.2386

La détresse respiratoire du nourrisson atteint de bronchiolite 10.1016/s1779-0123(09)70036-1

NZO/HlLtJ as a novel model for the studies on the role of metabolic syndrome in acute radiation toxicity 10.1080/09553002.2018.1547437

Effects of low-dose oxygen ions and protons on cardiac function and structure in male C57BL/6J mice 10.1016/j.lssr.2019.01.003

Changes in one-carbon metabolism and DNA methylation in the hearts of mice exposed to space environment-relevant doses of oxygen ions (16O) 10.1016/j.lssr.2019.05.003

Sex-Specific Effects of Dietary Methionine Restriction on the Intestinal Microbiome 10.3390/nu12030781

Methionine stress induces a ferroptotic gene signature in methionine dependent cancer cells 10.1101/2020.08.18.254490

Differences in cell death in methionine versus cysteine depletion 10.1002/em.22428

Dietary Methionine Deficiency Enhances Genetic Instability in Murine Immune Cells 10.3390/ijms22052378

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540

Martin Hauer-Jensen

Hauer-Jensen Martin

ORCID: 0000-0003-1776-4325

Interval estimators of relative potency in toxicology and radiation countermeasure studies: comparing methods and experimental designs 10.1080/10543406.2018.1535500

NZO/HlLtJ as a novel model for the studies on the role of metabolic syndrome in acute radiation toxicity 10.1080/09553002.2018.1547437

C/EBPδ protects from radiation-induced intestinal injury and sepsis by suppression of inflammatory and nitrosative stress 10.1038/s41598-019-49437-x

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540

Zulema Udaondo

Udaondo Zulema

ORCID: 0000-0003-3445-6842

Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli. 10.1111/1758-2229.12553

The pangenome of the genus Clostridium. 10.1111/1462-2920.13732

Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics. 10.1128/genomea.01752-16

Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida. 10.3389/fmicb.2016.02100

Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. 10.1111/1462-2920.13585

Pseudomonas putida as a platform for the synthesis of aromatic compounds. 10.1099/mic.0.000333

Specific Gene Loci of Clinical Pseudomonas putida Isolates. 10.1371/journal.pone.0147478

Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid. 10.1128/genomea.00373-16

First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid. 10.1111/1751-7915.12333

Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium. 10.1128/genomea.00904-15

Analysis of the core genome and pangenome of Pseudomonas putida. 10.1111/1462-2920.13015

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features. 10.1016/j.syapm.2015.07.002

Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics. 10.1111/1751-7915.12295

Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. 10.1093/femsre/fuv006

Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E. 10.1111/1462-2920.12775

Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J. 10.1111/1758-2229.12245

Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440. 10.1111/1758-2229.12167

Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital. 10.1371/journal.pone.0081604

Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234. 10.1128/genomea.00496-13

Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome. 10.1111/1751-7915.12061

Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1. 10.1111/1462-2920.12037

Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS. 10.1371/journal.pone.0039390

Evolution of antibiotic resistance, catabolic pathways and niche colonization. 10.1111/j.1751-7915.2012.00335.x

Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants. 10.1016/j.febslet.2012.07.031

Mining for novel antibiotics in the age of antimicrobial resistance. 10.1111/1751-7915.13662

Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries. 10.1111/1462-2920.15138

Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing. 10.1093/ofid/ofaa180

Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide. 10.3389/fmicb.2020.00202

Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia. 10.1128/mra.01380-19

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. 10.1016/j.meegid.2019.103965

Microbiomes as the new keystone for life sciences development. 10.1111/1751-7915.13424

Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. 10.1128/mra.00222-19

Towards a better metabolic engineering reference: the microbial chassis. 10.1111/1751-7915.13363

Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5. 10.1128/mra.00997-18

Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production. 10.1111/1751-7915.13269

Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators. 10.1111/1751-7915.13263

Fighting the enemy: one health approach against microbial resistance 10.1111/1751-7915.13587

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540

Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon 10.3390/life11080862

Se-Ran Jun

Jun Se-Ran

ORCID: 0000-0003-2681-3950

Isolation of AmpC- and extended spectrum β-lactamase-producing Enterobacterales from fresh vegetables in the United States 10.1016/j.foodcont.2021.108559

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species 10.1002/mbo3.973

Multi-Omic Analysis Reveals Different Effects of Sulforaphane on the Microbiome and Metabolome in Old Compared to Young Mice 10.3390/microorganisms8101500

Insertion sequences associated with antibiotic resistance genes in Enterococcus isolates from an inpatient with prolonged bacteremia 10.1101/2021.07.22.453447

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540