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Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia

Piroon Jenjaroenpun Thidathip Wongsurawat Zulema Udaondo Courtney Anderson James Lopez Meera Mohan Ruslana Tytarenko Brian Walker Intawat Nookaew David Ussery Atul Kothari Se-Ran Jun Steven R. Gill

Microbiology resource announcements, 2020-2-6

https://doi.org/10.1128/mra.01380-19

David Ussery

Ussery David

ORCID: 0000-0003-3632-5512

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104 10.1128/AEM.03821-15

Vibrio chromosome-specific families 10.3389/fmicb.2014.00073

Comparative Genomics 10.1007/978-3-642-30194-0_11

Physical Maps of Chromosomes 10.1002/9780470015902.a0001425

Bayesian prediction of microbial oxygen requirement 10.12688/f1000research.2-184.v1

Is the pan-genome also a pan-selectome? 10.12688/f1000research.1-16.v1

Computing for Comparative Microbial Genomics 10.1007/978-1-84800-255-5

Microbial Communities: Core and Pan-Genomics 10.1007/978-1-84800-255-5_12

Methods to Compare Genomes The First Examples 10.1007/978-1-84800-255-5_6

Bioinformatics for Microbiologists: An Introduction 10.1007/978-1-84800-255-5_2

Faculty of 1000 evaluation for Transposable elements re-wire and fine-tune the transcriptome. 10.3410/f.717973393.793470113

DNA Structure: A-, B- and Z-DNA Helix Families 10.1038/npg.els.0003122

A domain sequence approach to pangenomics: applications to Escherichia coli 10.12688/f1000research.1-19.v2

A domain sequence approach to pangenomics: applications to Escherichia coli 10.3410/f1000research.1-19.v1

Is the pan-genome also a pan-selectome? 10.3410/f1000research.1-16.v1

A domain sequence approach to pangenomics: applications to Escherichia coli 10.12688/f1000research.1-19.v1

Transcriptomics: Translated and Untranslated RNA 10.1007/978-1-84800-255-5_9

Expression of Genes and Proteins 10.1007/978-1-84800-255-5_10

Genomic Properties: Length, Base Composition and DNA Structures 10.1007/978-1-84800-255-5_7

Word Frequencies and Repeats 10.1007/978-1-84800-255-5_8

The Challenges of Programming: A Brief Introduction 10.1007/978-1-84800-255-5_5

Of Proteins, Genomes, and Proteomes 10.1007/978-1-84800-255-5_11

Metagenomics of Microbial Communities 10.1007/978-1-84800-255-5_13

Evolution of Microbial Communities; or, On the Origins of Bacterial Species 10.1007/978-1-84800-255-5_14

Sigma factors in a thousand E. coli genomes 10.1111/1462-2920.12236

Three views of microbial genomes 10.1016/s0923-2508(99)00116-3

Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes 10.1371/annotation/45b4b21a-d0d1-40d2-8efd-c30b28baf1eb

Microbial Genome Sequences: A New Era in Microbiology 10.1007/978-1-84800-255-5_3

An Overview of Genome Databases 10.1007/978-1-84800-255-5_4

Comparative Genomics ofPseudomonas 10.1002/9783527622009.ch1

Design of an Enterobacteriaceae Pan-Genome Microarray Chip 10.1007/978-3-642-16750-8_15

DNA Bendability and Nucleosome Positioning in Transcriptional Regulation 10.1007/0-387-29148-2_14

Genome Atlases, Potential Applications in Study of Metagenomes 10.1007/978-1-4614-6418-1_686-1

Standard operating procedure for computing pangenome trees 10.4056/sigs.38923

Comparison of 61 Sequenced Escherichia coli Genomes 10.1007/s00248-010-9717-3

PanFunPro: PAN-genome analysis based on FUNctional PROfiles 10.12688/f1000research.2-265.v1

Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes 10.1371/journal.pcbi.1000057

Comparative genomics of green sulfur bacteria 10.1007/s11120-009-9515-2

Extracytoplasmic function sigma factors in Pseudomonas syringae 10.1016/j.tim.2005.10.005

Faculty of 1000 evaluation for Finished bacterial genomes from shotgun sequence data. 10.3410/f.717963312.793465218

Faculty of 1000 evaluation for Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain. 10.3410/f.13960969.15418071

Faculty of 1000 evaluation for Population genomics of early events in the ecological differentiation of bacteria. 10.3410/f.14264956.15777401

Faculty of 1000 evaluation for Fast and accurate taxonomic assignments of metagenomic sequences using MetaBin. 10.3410/f.717497832.792902821

Faculty of 1000 evaluation for Bacterial species may exist, metagenomics reveal. 10.3410/f.717959594.793462923

Faculty of 1000 evaluation for The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli. 10.3410/f.13378960.14748059

Faculty of 1000 evaluation for IS30 elements are mediators of genetic diversity in Oenococcus oeni. 10.3410/f.717950467.793455723

Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes 10.1371/annotation/4eb76620-9599-40f5-bb05-54f252e48f3b

Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes 10.1371/annotation/27a4f12b-e6e6-4d19-bf53-09ce05dfe1b9

Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes 10.1371/annotation/3785bc7c-4548-4554-8331-74cc68b8f356

Correction: Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes 10.1371/annotation/91dc9016-fc1e-495e-8828-22608c3efe44

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera 10.1007/s00248-011-9948-y

Opening the pan-genomics box 10.1016/j.mib.2006.08.010

DNA: Structure and function 10.1016/s1067-5701(98)80019-3

Structural features of fungal genomes 10.1007/4735_112

Genome Atlases, Potential Applications in Study of Metagenomes 10.1007/978-1-4899-7478-5_686

GSC 11: Dave Ussery 10.4016/28633.01

Sequences as Biological Information: Cells Obey the Laws of Chemistry and Physics 10.1007/978-1-84800-255-5_1

Bias of purine stretches in sequenced chromosomes 10.1016/s0097-8485(02)00013-x

Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome 10.1111/j.1574-6968.2007.00916.x

A DNA structural atlas for Escherichia coli 10.1006/jmbi.2000.3787

A Classification of Possible Routes of Darwinian Evolution 10.1006/jtbi.2000.1070

Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes 10.1186/1471-2164-9-104

Comparative Genomics of Four Pseudomonas Species 10.1007/978-1-4419-9086-0_5

Faculty of 1000 evaluation for Origin and evolution of protein fold designs inferred from phylogenomic analysis of CATH domain structures in proteomes. 10.3410/f.718012890.793477220

Natural genetic engineering: intelligence & design in evolution? 10.1186/2042-5783-1-11

Genomic Analysis of Two-Component Signal Transduction Proteins in Basidiomycetes 10.1159/000277654

Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes 10.1186/1471-2164-10-346

The Genome Atlas Resource 10.1007/978-3-642-16750-8_13

Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray 10.1186/gb-2007-8-12-r267

Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae 10.1186/1471-2164-8-397

Environmental influences on the in vivo level of intramolecular triplex DNA in Escherichia coli 10.1021/bi00075a013

Microbial comparative pan-genomics using binomial mixture models 10.1186/1471-2164-10-385

From essential to persistent genes: a functional approach to constructing synthetic life 10.1016/j.tig.2012.11.001

Origin of replication in circular prokaryotic chromosomes 10.1111/j.1462-2920.2005.00917.x

Analysis and prediction of gene splice sites in four Aspergillus genomes 10.1016/j.fgb.2008.09.010

Special Issue on Campylobacter and Helicobacter Genomics 10.1166/153730503322351890

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium 10.1111/j.1365-2958.2012.08162.x

CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics 10.1371/journal.pone.0060120

Genome organisation and chromatin structure in Escherichia coli 10.1016/s0300-9084(00)01225-6

Strand misalignments lead to quasipalindrome correction 10.1016/s0168-9525(03)00136-7

Global features of the Alcanivorax borkumensis SK2 genome 10.1111/j.1462-2920.2007.01483.x

The genome BLASTatlas—a GeneWiz extension for visualization of whole-genome homology 10.1039/b717118h

Environmental Influences on DNA Curvature 10.1080/07391102.1999.10508294

Genomic variation in Salmonella enterica core genes for epidemiological typing 10.1186/1471-2164-13-88

Visualization and Significance of DNA Structural Motifs in the Campylobacter jejuni Genome 10.1166/gl.2002.004

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina 10.1186/1471-2164-8-325

The genomic code: inferring Vibrionaceae niche specialization 10.1038/nrmicro1476

The Atlas visualization of genomewide information 10.1016/s0580-9517(02)33004-6

Systems biology: in the broadest sense of the word 10.1111/j.1462-2920.2005.803_12.x

A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut 10.1007/s00248-010-9796-1

Defining the Pseudomonas Genus: Where Do We Draw the Line with Azotobacter? 10.1007/s00248-011-9914-8

The Salmonella enterica Pan-genome 10.1007/s00248-011-9880-1

On the Origins of a Vibrio Species 10.1007/s00248-009-9596-7

Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972 10.1007/s00438-008-0330-9

Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes 10.1371/journal.pone.0069878

Design and construction of a circular intensity differential scattering instrument 10.1063/1.1137612

[13] Probing DNA structure with psoralen in vitro 10.1016/0076-6879(92)12015-i

Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering 10.1186/1471-2164-10-487

The σ 54 regulon (sigmulon) of Pseudomonas putida 10.1111/j.1462-2920.2003.00528.x

Appendix Estimation of superhelical density in Vivo from analysis of the level of cruciforms existing in living cells 10.1016/0022-2836(91)80209-d

Microbial taxonomy in the post-genomic era: Rebuilding from scratch? 10.1007/s00203-014-1071-2

Insights from 20 years of bacterial genome sequencing 10.1007/s10142-015-0433-4

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes 10.4056/sigs.28608

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands 10.1186/1471-2164-13-66

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes 10.4056/sigs.28177

The Importance of Virulence Prediction and Gene Networks in Microbial Risk Assessment 10.1080/10807030701226855

Genomic taxonomy of vibrios 10.1186/1471-2148-9-258

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli 10.1186/2042-5783-2-8

Studies on Monitoring and Tracking Genetic Resources: An Executive Summary 10.4056/sigs.1491

Comparative Genomics of Pseudomonas aeruginosa PAO1 and Pseudomonas putida KT2440: Orthologs, Codon Usage, Repetitive Extragenic Palindromic Elements, and Oligonucleotide Motif Signatures 10.1166/gl.2002.021

Analysis of intra-genomic GC content homogeneity within prokaryotes 10.1186/1471-2164-11-464

Review and phylogenetic analysis of qac genes that reduce susceptibility to quaternary ammonium compounds in Staphylococcus species 10.1556/eujmi-d-14-00038

Quality scores for 32,000 genomes 10.1186/1944-3277-9-20

The Complete Genome Sequence and Analysis of the Epsilonproteobacterium Arcobacter butzleri 10.1371/journal.pone.0001358

Veillonella, Firmicutes: Microbes disguised as Gram negatives 10.4056/sigs.2981345

Genomic Characterization of Campylobacter jejuni Strain M1 10.1371/journal.pone.0012253

RpoD Promoters in Campylobacter jejuni Exhibit a Strong Periodic Signal Instead of a −35 Box 10.1016/s0022-2836(03)00034-2

Ebolavirus comparative genomics 10.1093/femsre/fuv031

Computational genomics-proteomics and Phylogeny analysis of twenty one mycobacterial genomes (Tuberculosis & non Tuberculosis strains) 10.1186/2042-5783-2-7

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes 10.1186/1471-2164-13-577

Bayesian prediction of bacterial growth temperature range based on genome sequences 10.1186/1471-2164-13-s7-s3

Differences in two-component signal transduction proteins among the genus Brucella: Implications for host preference and pathogenesis 10.1016/j.vetmic.2010.01.007

The TNFα receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in cystic fibrosis 10.1007/s00439-006-0140-2

Comparative Genomics to Delineate Pathogenic Potential in Non-O157 Shiga Toxin-Producing Escherichia coli (STEC) from Patients with and without Haemolytic Uremic Syndrome (HUS) in Norway 10.1371/journal.pone.0111788

[18] Analysis of DNA structure in vivo using psoralen photobinding: Measurement of supercoiling, topological domains, and DNA-protein interactions 10.1016/0076-6879(92)12020-q

Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus 10.1186/1471-2180-8-110

Genome Update: promoter profiles 10.1099/mic.0.27504-0

Databases, Sequenced Genomes 10.1006/rwgn.2001.0313

DNA Denaturation 10.1016/b978-0-12-374984-0.00418-6

DNA Denaturation 10.1006/rwgn.2001.0353

The Genomic Standards Consortium 10.1371/journal.pbio.1001088

Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets 10.1016/j.gene.2012.07.070

The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571 10.1186/1471-2164-9-271

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis 10.1128/aem.02612-15

Pan-Genome Analysis of Human Gastric PathogenH. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets 10.1155/2015/139580

Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods 10.1186/1471-2148-10-249

Evaluation of potential regulatory elements identified as DNase I hypersensitive sites in the CFTR gene 10.1046/j.0014-2956.2001.02679.x

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment 10.3389/fmicb.2015.01118

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015) 10.1186/s40793-016-0134-1

Genome Update: DNA repeats in bacterial genomes 10.1099/mic.0.27628-0

Genome Update: rRNAs in sequenced microbial genomes 10.1099/mic.0.27173-0

Genome Update: tRNAs in sequenced microbial genomes 10.1099/mic.0.27260-0

Genome Update: annotation quality in sequenced microbial genomes 10.1099/mic.0.27338-0

Genome Update: alignment of bacterial chromosomes 10.1099/mic.0.27416-0

Genome Update: 161 prokaryotic genomes sequenced, and counting 10.1099/mic.0.26984-0

Genome Update: length distributions of sequenced prokaryotic genomes 10.1099/mic.0.27032-0

Genome Update: AT content in sequenced prokaryotic genomes 10.1099/mic.0.27103-0

Genome Comparison of Bacterial Pathogens 10.1159/000235759

Tools for Comparison of Bacterial Genomes 10.1007/978-3-540-77587-4_337

Genome update: the 1000th genome - a cautionary tale 10.1099/mic.0.038257-0

Two novel methods for using genome sequences to infer taxonomy 10.1099/mic.0.059816-0

CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data 10.1093/bioinformatics/bth423

Design of a Seven-Genome Escherichia coli Microarray for Comparative Genomic Profiling 10.1128/jb.01043-06

The Genus Burkholderia: Analysis of 56 Genomic Sequences 10.1159/000235768

The chromatin-associated protein H-NS 10.1016/0300-9084(94)90022-1

On the total number of genes and their length distribution in complete microbial genomes 10.1016/s0168-9525(01)02372-1

DNA microarray analysis of fim mutations in Escherichia coli 10.1007/s00438-002-0705-2

Complete DNA sequence of the linear mitochondrial genome of the pathogenic yeast Candida parapsilosis 10.1007/s00438-004-1046-0

RNAmmer: consistent and rapid annotation of ribosomal RNA genes 10.1093/nar/gkm160

Genome Sequences of Two Stress-Tolerant Campylobacter jejuni Poultry Strains, 305 and DFVF1099 10.1128/jb.05753-11

Formation of a Combined H-DNA/Open TATA Box Structure in the Promoter Sequence of the Human Na,K-ATPase alpha 2 Gene 10.1074/jbc.271.23.13441

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 10.1038/nbt1282

Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792 10.1099/mic.0.000141

Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse 10.4056/sigs.1313504

Complete Genome Sequence of the Commensal Enterococcus faecalis 62, Isolated from a Healthy Norwegian Infant 10.1128/jb.00183-11

17 The TNFα receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in Cystic Fibrosis 10.1016/s1569-1993(06)80018-4

Benchmarking of Methods for Genomic Taxonomy 10.1128/jcm.02981-13

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria 10.1128/jcm.06094-11

Polyclonality of Concurrent Natural Populations of Alteromonas macleodii 10.1093/gbe/evs112

Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart 10.1128/aem.03715-12

Non-O1 Vibrio cholerae unlinked to cholera in Haiti 10.1073/pnas.1212443109

Toward a Standards-Compliant Genomic and Metagenomic Publication Record 10.1089/omi.2008.a2b2

Genomic Standards Consortium Projects 10.4056/sigs.5559680

Genomic Standards Consortium Projects 10.4056/sigs.5559608

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium 10.1073/pnas.1201061109

Three Complete Genome Sequences of Genotype G Mumps Virus from the 2016 Outbreak in Arkansas, USA 10.1128/genomeA.00555-17

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D 10.1093/nar/gky014

Genome Sequences of Zika Virus Strains Recovered from Amniotic Fluid, Placenta, and Fetal Brain of a Microcephaly Patient in Thailand, 2017 10.1128/MRA.01020-18

Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775 10.1128/MRA.00046-19

Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection 10.1128/MRA.00222-19

What can we learn from over 100,000 Escherichia coli genomes? 10.1101/708131

Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species 10.1002/mbo3.973

Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing 10.1093/ofid/ofaa180

16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand 10.1128/MRA.00248-20

Machine Learning Methods in Drug Discovery 10.3390/molecules25225277

Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing 10.1128/MRA.01109-20

Assessment of Bacterial Load in Polyethylene Terephthalate (PET) Bottled Water Marketed in Kathmandu Valley, Nepal 10.1155/2021/6681249

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups 10.1038/s42003-020-01626-5

Zulema Udaondo

Udaondo Zulema

ORCID: 0000-0003-3445-6842

Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli. 10.1111/1758-2229.12553

The pangenome of the genus Clostridium. 10.1111/1462-2920.13732

Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics. 10.1128/genomea.01752-16

Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida. 10.3389/fmicb.2016.02100

Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. 10.1111/1462-2920.13585

Pseudomonas putida as a platform for the synthesis of aromatic compounds. 10.1099/mic.0.000333

Specific Gene Loci of Clinical Pseudomonas putida Isolates. 10.1371/journal.pone.0147478

Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid. 10.1128/genomea.00373-16

First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid. 10.1111/1751-7915.12333

Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium. 10.1128/genomea.00904-15

Analysis of the core genome and pangenome of Pseudomonas putida. 10.1111/1462-2920.13015

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features. 10.1016/j.syapm.2015.07.002

Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics. 10.1111/1751-7915.12295

Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. 10.1093/femsre/fuv006

Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E. 10.1111/1462-2920.12775

Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J. 10.1111/1758-2229.12245

Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440. 10.1111/1758-2229.12167

Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital. 10.1371/journal.pone.0081604

Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234. 10.1128/genomea.00496-13

Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome. 10.1111/1751-7915.12061

Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1. 10.1111/1462-2920.12037

Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS. 10.1371/journal.pone.0039390

Evolution of antibiotic resistance, catabolic pathways and niche colonization. 10.1111/j.1751-7915.2012.00335.x

Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants. 10.1016/j.febslet.2012.07.031

Mining for novel antibiotics in the age of antimicrobial resistance. 10.1111/1751-7915.13662

Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries. 10.1111/1462-2920.15138

Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing. 10.1093/ofid/ofaa180

Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide. 10.3389/fmicb.2020.00202

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016. 10.1016/j.meegid.2019.103965

Microbiomes as the new keystone for life sciences development. 10.1111/1751-7915.13424

Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection. 10.1128/mra.00222-19

Towards a better metabolic engineering reference: the microbial chassis. 10.1111/1751-7915.13363

Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5. 10.1128/mra.00997-18

Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production. 10.1111/1751-7915.13269

Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators. 10.1111/1751-7915.13263

Fighting the enemy: one health approach against microbial resistance 10.1111/1751-7915.13587

Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure 10.3390/metabo11080540

Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon 10.3390/life11080862