Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid
Miguel A. Matilla
Alison Drew
Zulema Udaondo
Tino Krell
George P. C. Salmond
Genome Announcements, 2016
Tino Krell
Krell Tino
ORCID: 0000-0002-9040-3166
Prevalence and Specificity of Chemoreceptor Profiles in Plant-Associated Bacteria
10.1128/mSystems.00951-21
Identification of ligands for bacterial sensor proteins
10.1007/s00294-015-0528-4
Identification of a chemoreceptor for C2 and C3 carboxylic acids
10.1128/AEM.01529-15
Correlation between signal input and output in PctA and PctB amino acid chemoreceptor of Pseudomonas aeruginosa
10.1111/mmi.12953
Multiple signals modulate the activity of the complex sensor kinase TodS
10.1111/1751-7915.12142
Specific gamma-aminobutyrate chemotaxis in pseudomonads with different lifestyle
10.1111/mmi.13045
Tackling the bottleneck in bacterial signal transduction research: High-throughput identification of signal molecules
10.1111/mmi.12975
Pseudomonas chemotaxis
10.1111/1574-6976.12081
RecA protein plays a role in the chemotactic response and chemoreceptor clustering of Salmonella enterica
10.1371/journal.pone.0105578
Structural biology: Specificity of the CheR2 methyltransferase in pseudomonas aeruginosa is directed by a C-terminal pentapeptide in the McpB chemoreceptor
10.1126/scisignal.2004849
Identification of new residues involved in intramolecular signal transmission in a prokaryotic transcriptional repressor
10.1128/JB.00589-13
Fructooligosacharides reduce Pseudomonas aeruginosa PAO1 pathogenicity through distinct mechanisms
10.1371/journal.pone.0085772
Qualitative and quantitative assays for flagellum-mediated chemotaxis
10.1007/978-1-4939-0473-0_10
Characterization of molecular interactions using isothermal titration calorimetry
10.1007/978-1-4939-0473-0_16
Fructose 1-phosphate is the one and only physiological effector of the Cra (FruR) regulator of Pseudomonas putida
10.1016/j.fob.2014.03.013
GtrS and GltR form a two-component system: The central role of 2-ketogluconate in the expression of exotoxin A and glucose catabolic enzymes in Pseudomonas aeruginosa
10.1093/nar/gku496
The HBM domain: Introducing bimodularity to bacterial sensing
10.1002/pro.2410
Transcriptional control by two interacting regulatory proteins: Identification of the PtxS binding site at PtxR
10.1093/nar/gkt773
The Pseudomonas putidaHskA hybrid sensor kinase responds to redox signals and contributes to the adaptation of the electron transport chain composition in response to oxygen availability
10.1111/1758-2229.12083
Purification, crystallization and preliminary crystallographic analysis of the ligand-binding regions of the PctA and PctB chemoreceptors from Pseudomonas aeruginosa in complex with amino acids
10.1107/S1744309113023592
High specificity in CheR methyltransferase function: CheR2 of pseudomonas putida is essential for chemotaxis, whereas CheR1 is involved in biofilm formation
10.1074/jbc.M113.472605
Bioavailability of pollutants and chemotaxis
10.1016/j.copbio.2012.08.011
Paralogous chemoreceptors mediate chemotaxis towards protein amino acids and the non-protein amino acid gamma-aminobutyrate (GABA)
10.1111/mmi.12255
The Pseudomonas putida HskA hybrid sensor kinase controls the composition of the electron transport chain
10.1111/1758-2229.12017
Tactic responses to pollutants and their potential to increase biodegradation efficiency
10.1111/jam.12076
Evidence for chemoreceptors with bimodular ligand-binding regions harboring two signal-binding sites
10.1073/pnas.1201400109
In situ X-ray data collection from highly sensitive crystals of Pseudomonas putida PtxS in complex with DNA
10.1107/S1744309112028540
Genes Encoding Cher-TPR Fusion Proteins Are Predominantly Found in Gene Clusters Encoding Chemosensory Pathways with Alternative Cellular Functions
10.1371/journal.pone.0045810
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants
10.1016/j.febslet.2012.07.031
Responses of Pseudomonas putida to toxic aromatic carbon sources
10.1016/j.jbiotec.2012.01.026
Genes for Carbon metabolism and the ToxA virulence factor in pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS
10.1371/journal.pone.0039390
Identification of a novel calcium binding motif based on the detection of sequence insertions in the animal peroxidase domain of bacterial proteins
10.1371/journal.pone.0040698
Study of the TmoS/TmoT two-component system: Towards the functional characterization of the family of TodS/TodT like systems
10.1111/j.1751-7915.2011.00322.x
Solvent tolerance in Gram-negative bacteria
10.1016/j.copbio.2011.11.015
Transcriptional control of the main aromatic hydrocarbon efflux pump in Pseudomonas
10.1111/j.1758-2229.2011.00255.x
Construction of a prototype two-component system from the phosphorelay system TodS/TodT
10.1093/protein/gzs001
Crystallization and crystallographic analysis of the ligand-binding domain of the Pseudomonas putida chemoreceptor McpS in complex with malate and succinate
10.1107/S1744309112004940
The Crp regulator of Pseudomonas putida: Evidence of an unusually high affinity for its physiological effector, cAMP
10.1111/j.1462-2920.2011.02622.x
Laboratory research aimed at closing the gaps in microbial bioremediation
10.1016/j.tibtech.2011.06.007
Effect of the β-propiolactone treatment on the adsorption and fusion of influenza A/Brisbane/59/2007 and A/New Caledonia/20/1999 virus H1N1 on a dimyristoylphosphatidylcholine/ganglioside GM3 mixed phospholipids monolayer at the air-water interface
10.1021/la2027175
Unbinding forces of single pertussis toxin-antibody complexes measured by atomic force spectroscopy correlate with their dissociation rates determined by surface plasmon resonance
10.1002/jmr.1159
Three dimensional morphology of rabies virus studied by cryo-electron tomography
10.1016/j.jsb.2011.07.003
Intramolecular signal transmission in a tetrameric repressor of the IclR family
10.1073/pnas.1018894108
The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment
10.1111/j.1462-2920.2011.02492.x
Bacterial chemotaxis towards aromatic hydrocarbons in Pseudomonas
10.1111/j.1462-2920.2011.02493.x
Diversity at its best: Bacterial taxis
10.1111/j.1462-2920.2010.02383.x
Fructose 1-phosphate is the preferred effector of the metabolic regulator Cra of Pseudomonas putida
10.1074/jbc.M110.187583
Physiologically relevant divalent cations modulate citrate recognition by the McpS chemoreceptor
10.1002/jmr.1101
Crystal structure of TtgV in complex with its DNA operator reveals a general model for cooperative DNA binding of tetrameric gene regulators
10.1101/gad.603510
Sensing of environmental signals: Classification of chemoreceptors according to the size of their ligand binding regions
10.1111/j.1462-2920.2010.02325.x
Bacterial sensor kinases: Diversity in the recognition of environmental signals
10.1146/annurev.micro.112408.134054
Compartmentalized glucose metabolism in Pseudomonas putida is controlled by the PtxS repressor
10.1128/JB.00520-10
Catabolite repression of the TodS/TodT two-component system and effector-dependent transphosphorylation of TodT as the basis for toluene dioxygenase catabolic pathway control
10.1128/JB.00379-10
Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: Differential chemotactic response towards receptor ligands
10.1074/jbc.M110.110403
Struggling to get a universal meningococcal vaccine and novel uses for bacterial toxins in cancer treatment
10.1111/j.1751-7915.2010.00195.x
PhhR Binds to Target Sequences at Different Distances with Respect to RNA Polymerase in Order to Activate Transcription
10.1016/j.jmb.2009.09.045
The heat, drugs and knockout systems of Microbial Biotechnology
10.1111/j.1751-7915.2009.00144.x
Regulation of glucose metabolism in Pseudomonas. The phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain
10.1074/jbc.M109.014555
The enigma of cytosolic two-component systems: A hypothesis
10.1111/j.1758-2229.2009.00020.x
The sensor kinase TodS operates by a multiple step phosphorelay mechanism involving two autokinase domains
10.1074/jbc.M900521200
Responses of Pseudomonas to small toxic molecules by a mosaic of domains
10.1016/j.mib.2009.02.001
Two Levels of Cooperativeness in the Binding of TodT to the tod Operon Promoter
10.1016/j.jmb.2008.10.011
Hexameric oligomerization of mitochondrial peroxiredoxin PrxIIF and formation of an ultrahigh affinity complex with its electron donor thioredoxin Trx-o
10.1093/jxb/ern177
Microcalorimetry: A response to challenges in modern biotechnology
10.1111/j.1751-7915.2007.00013.x
Hierarchical Binding of the TodT Response Regulator to Its Multiple Recognition Sites at the tod Pathway Operon Promoter
10.1016/j.jmb.2007.12.004
Complexity in efflux pump control: Cross-regulation by the paralogues TtgV and TtgT
10.1111/j.1365-2958.2007.06004.x
Biochemical and molecular characterization of the mitochondrial peroxiredoxin PsPrxII F from Pisum sativum
10.1016/j.plaphy.2007.07.017
Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals
10.1073/pnas.0701547104
Optimization of the Palindromic Order of the TtgR Operator Enhances Binding Cooperativity
10.1016/j.jmb.2007.04.025
The Transcriptional Repressor TtgV Recognizes a Complex Operator as a Tetramer and Induces Convex DNA Bending
10.1016/j.jmb.2007.04.022
Crystal Structures of Multidrug Binding Protein TtgR in Complex with Antibiotics and Plant Antimicrobials
10.1016/j.jmb.2007.03.062
Different modes of binding of mono- and biaromatic effectors to the transcriptional regulator TTGV: Role in differential derepression from its cognate operator
10.1074/jbc.M610032200
The use of microcalorimetry to study regulatory mechanisms in pseudomonas
10.1007/978-1-4020-6097-7_9
The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins
10.1073/pnas.0602902103
The IclR family of transcriptional activators and repressors can be defined by a single profile
10.1110/ps.051857206
Effector-repressor interactions, binding of a single effector molecule to the operator-bound TtgR homodimer mediates derepression
10.1074/jbc.M511095200
Members of the IclR family of bacterial transcriptional regulators function as activatorsand/or repressors
10.1111/j.1574-6976.2005.00008.x
Characterization of different strains of poliovirus and influenza virus by differential scanning calorimetry
10.1042/BA20040113
The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: Evidence from isothermal titration calorimetry
10.1074/jbc.M500783200
Do Th1 or Th2 sequence motifs exist in proteins? Identification of amphipatic immunomodulatory domains in Helicobacter pylori catalase
10.1016/j.imlet.2004.09.011
Role of transferrin receptor from a Neisseria meningitidis tbpB isotype II strain in human transferrin binding and virulence
10.1128/IAI.72.6.3461-3470.2004
HIV-1 gp41 and gp160 are hyperthermostable proteins in a mesophilic environment: Characterization of gp41 mutants
10.1111/j.1432-1033.2004.04068.x
Transferrin-Binding Protein B of Neisseria meningitidis: Sequence-Based Identification of the Transferrin-Binding Site Confirmed by Site-Directed Mutagenesis
10.1128/JB.186.3.850-857.2004
The use of microcalorimetry to characterize tetanus neurotoxin, pertussis toxin and filamentous haemagglutinin
10.1042/BA20030089
Insight into the structure and function of the transferrin receptor from Neisseria meningitidis using microcalorimetric techniques
10.1074/jbc.M204461200
Affinity-purification of Transferrin-binding protein B under nondenaturing conditions
10.1006/prep.2001.1593
The structure and mechanism of the type II dehydroquinase from Streptomyces coelicolor
10.1016/S0969-2126(02)00747-5
The shikimate pathway and its branches in apicomplexan parasites
10.1086/338004
Sequence requirements of the ATP-binding site within the C-terminal nucleotide-binding domain of mouse P-glycoprotein: Structure-activity relationships for flavonoid binding
10.1021/bi010657c
Biochemical and X-ray crystallographic studies on shikimate kinase: The important structural role of the P-loop lysine
10.1110/ps.52501
The two types of 3-dehydroquinase have distinct structures but catalyze the same overall reaction
10.1038/9287
The folding and assembly of the dodecameric type II dehydroquinases
10.1042/0264-6021:3380195
Evidence for the shikimate pathway in apicomplexan parasites
10.1038/31723
The three-dimensional structure of shikimate kinase
10.1006/jmbi.1998.1755
93 the interaction of shikimate kinase from Erwinia chrystanthemi with substrates
10.1042/bst025s627
Crystallization and preliminary X-ray crystallographic analysis of shikimate kinase from Erwinia chrysanthemi
10.1107/S0907444997004319
Localization of the active site of type II dehydroquinases. Identification of a common arginine-containing motif in the two classes of dehydroquinases
10.1074/jbc.271.40.24492
Phosphoglycerate mutase from Schizosaccharomyces pombe: Development of an expression system and characterisation of three histidine mutants of the enzyme
10.1016/0167-4838(96)00046-5
The use of electrospray mass spectrometry to identify an essential arginine residue in type II dehydroquinases
10.1016/0014-5793(95)00083-L
The use of mass spectrometry to examine the formation and hydrolysis of the phosphorylated form of phosphoglycerate mutase
10.1016/0014-5793(95)00044-A
Identification and purification of a distinct dihydrolipoamide dehydrogenase from pea chloroplasts
10.1007/bf00208309
Microcalorimetry as a General Technique to Characterize Ligand Binding
10.1007/8623_2014_3
The Use of Microcalorimetric Techniques to Study the Structure and Function of the Transferrin Receptor from Neisseria meningitidis
10.1007/978-3-662-08722-0_14
The folding and assembly of the dodecameric type II dehydroquinases
10.1042/bj3380195
Chemical modification monitored by electrospray mass spectrometry: a rapid and simple method for identifying and studying functional residues in enzymes
10.1111/j.1399-3011.1998.tb01217.x
Identification of a chemoreceptor that specifically mediates chemotaxis toward metabolizable purine derivatives
10.1111/mmi.13215
Molecular Responses to Solvent Stress: Strategies for Living in Unpalatable Substrates
10.1007/978-4-431-53898-1_47
McpQ is a specific citrate chemoreceptor that responds preferentially to citrate/metal ion complexes
10.1111/1462-2920.13030
Paralogous Regulators ArsR1 and ArsR2 of Pseudomonas putida KT2440 as a Basis for Arsenic Biosensor Development
10.1128/AEM.00606-16
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid
10.1128/genomeA.00373-16
The expression of many chemoreceptor genes depends on the cognate chemoeffector as well as on the growth medium and phase
10.1007/s00294-016-0646-7
Purification and characterization of Pseudomonas aeruginosa LasR expressed in acyl-homoserine lactone free Escherichia coli cultures
10.1016/j.pep.2016.10.007
Disparate response to microoxia and nitrogen oxides of the Bradyrhizobium japonicum napEDABC, nirK and norCBQD denitrification genes
10.1016/j.niox.2017.02.002
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics
10.1128/genomeA.01752-16
Recent Advances and Future Prospects in Bacterial and Archaeal Locomotion and Signal Transduction
10.1128/JB.00203-17
Sensory Repertoire of Bacterial Chemoreceptors
10.1128/MMBR.00033-17
Exploring the (Almost) Unknown: Archaeal Two-Component Systems
10.1128/JB.00774-17
The plant compound rosmarinic acid induces a broad quorum sensing response in Pseudomonas aeruginosa PAO1
10.1111/1462-2920.14301
An auxin controls bacterial antibiotics production
10.1093/nar/gky766
Recognition of dominant attractants by key chemoreceptors mediates recruitment of plant growth‐promoting rhizobacteria
10.1111/1462-2920.14472
Functional Annotation of Bacterial Signal Transduction Systems: Progress and Challenges
10.3390/ijms19123755
The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN
10.1128/mBio.02334-18
The involvement of McpB chemoreceptor from Pseudomonas aeruginosa PAO1 in virulence
10.1038/s41598-019-49697-7
Chemoperception of Specific Amino Acids Controls Phytopathogenicity in Pseudomonas syringae pv. tomato
10.1128/mBio.01868-19
How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
10.1128/mBio.03066-19
The use of isothermal titration calorimetry to unravel chemotactic signalling mechanisms
10.1111/1462-2920.15035
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide
10.3389/fmicb.2020.00202
Determination of ligand profiles for pseudomonas aeruginosa solute binding proteins
10.3390/ijms20205156
Concentration dependent effect of plant root exudates on the chemosensory systems of Pseudomonas putida KT2440
10.3389/fmicb.2019.00078
High-Affinity Chemotaxis to Histamine Mediated by the TlpQ Chemoreceptor of the Human Pathogen Pseudomonas aeruginosa.
10.1128/mbio.01894-18
Structural Basis for Polyamine Binding at the dCACHE Domain of the McpU Chemoreceptor from Pseudomonas putida
10.1016/j.jmb.2018.05.008
Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators
10.1111/1751-7915.13263
The activity of the C4-dicarboxylic acid chemoreceptor of Pseudomonas aeruginosa is controlled by chemoattractants and antagonists
10.1038/s41598-018-20283-7
The effect of bacterial chemotaxis on host infection and pathogenicity
10.1093/femsre/fux052
High-throughput screening to identify chemoreceptor ligands
10.1007/978-1-4939-7577-8_23
Assigning chemoreceptors to chemosensory pathways in Pseudomonas aeruginosa
10.1073/pnas.1708842114
Identification of GntR as regulator of the glucose metabolism in Pseudomonas aeruginosa
10.1111/1462-2920.13871
Metabolic value chemoattractants are preferentially recognized at broad ligand range chemoreceptor of Pseudomonas putida KT2440
10.3389/fmicb.2017.00990
Riboswitches as potential targets for the development of anti-biofilm drugs
10.2174/1568026617666170407163517
Chemoreceptor-based signal sensing
10.1016/j.copbio.2016.11.021
Identification of a chemoreceptor in Pseudomonas aeruginosa that specifically mediates chemotaxis toward α-ketoglutarate
10.3389/fmicb.2016.01937
Two different mechanisms mediate chemotaxis to inorganic phosphate in Pseudomonas aeruginosa
10.1038/srep28967
Rosmarinic acid is a homoserine lactone mimic produced by plants that activates a bacterial quorum-sensing regulator
10.1126/scisignal.aaa8271
Biosynthesis of the acetyl-coA carboxylase-inhibiting antibiotic, andrimid in Serratia is regulated by hfq and the LysR-type transcriptional regulator, admX
10.1111/1462-2920.13241
Assessment of the contribution of chemoreceptor-based signalling to biofilm formation
10.1111/1462-2920.13170
So different and still so similar: The plant compound rosmarinic acid mimics bacterial homoserine lactone quorum sensing signals
10.1080/19420889.2016.1156832
Identification and Characterization of Bacterial Chemoreceptors Using Quantitative Capillary and Gradient Plate Chemotaxis Assays
10.21769/bioprotoc.1789
Shikimate pathway in apicomplexan parasites
10.1038/16618
Degeneration of rat cholinergic basal forebrain neurons and reactive changes in nerve growth factor expression after chronic neurotoxic injury--I. Degeneration and plastic response of basal forebrain neurons.
10.1016/0306-4522(94)00526-b
Degeneration of rat cholinergic basal forebrain neurons and reactive changes in nerve growth factor expression after chronic neurotoxic injury--II. Reactive expression of the nerve growth factor gene in astrocytes.
10.1016/0306-4522(94)00523-8
Sensing, Signaling, and Uptake: An Introduction
10.1007/978-3-319-50542-8_29
The Family of Two-Component Systems That Regulate Hydrocarbon Degradation Pathways
10.1007/978-3-319-50542-8_6
Genetics of Sensing, Accessing, and Exploiting Hydrocarbons
10.1007/978-3-319-50542-8_46
Extrusion Pumps for Hydrocarbons: An Efficient Evolutionary Strategy to Confer Resistance to Hydrocarbons
10.1007/978-3-319-50542-8_47
Membrane Composition and Modifications in Response to Aromatic Hydrocarbons in Gram-Negative Bacteria
10.1007/978-3-319-50542-8_48
Plant growth promotion and biocontrol mediated by plant associated bacteria
10.1007/978-981-10-5514-0
Two-Component Systems that Control the Expression of Aromatic Hydrocarbon Degradation Pathways
10.1002/9781119004813.ch21
Microcalorimetry as a General Technique to Characterize Ligand Binding: What Needs to be Considered When Analyzing Hydrocarbons
10.1007/978-3-540-77587-4_331
Protocols for the Characterization of Solvent Tolerant Microorganisms: Construction and Characterization of Mutants
10.1007/978-3-540-77587-4_309
Genetics of Accessing and Exploiting Hydrocarbons
10.1007/978-3-540-77587-4_109
Removal of Hydrocarbons and Other Related Chemicals via the Rhizosphere of Plants
10.1007/978-3-540-77587-4_190
Extrusion Pumps for Hydrocarbons: An Efficient Evolutionary Strategy to Confer Resistance to Hydrocarbons
10.1007/978-3-540-77587-4_110
Membrane Composition and Modifications in Response to Aromatic Hydrocarbons in Gram Negative Bacteria
10.1007/978-3-540-77587-4_111
The structural basis for signal promiscuity in a bacterial chemoreceptor
10.1111/febs.15580
Evidence for Pentapeptide-Dependent and Independent CheB Methylesterases
10.3390/ijms21228459
Reply: Shikimate pathway in apicomplexan parasites
10.1038/16621
Chemoreceptors with C-terminal pentapeptides for CheR and CheB binding are abundant in bacteria that maintain host interactions
10.1016/j.csbj.2020.07.006
Pseudomonas aeruginosa as a Model To Study Chemosensory Pathway Signaling
10.1128/MMBR.00151-20
Reduction of alternative electron acceptors drives biofilm formation in Shewanella algae
10.1038/s41522-020-00177-1
Low CyaA expression and anti‐cooperative binding of cAMP to CRP frames the scope of the cognate regulon of Pseudomonas putida
10.1111/1462-2920.15422
Amino acid sensor conserved from bacteria to humans
10.1101/2021.05.05.442820
Histamine: A Bacterial Signal Molecule
10.3390/ijms22126312
Chemotaxis of Beneficial Rhizobacteria to Root Exudates: The First Step towards Root–Microbe Rhizosphere Interactions
10.3390/ijms22136655
Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae
10.1128/MRA.00559-21
A catalogue of signal molecules that interact with sensor kinases, chemoreceptors and transcriptional regulators
10.1093/femsre/fuab043
Miguel A. Matilla
Matilla Miguel A.
ORCID: 0000-0002-8468-9604
The broad-spectrum antibiotic, zeamine, kills the nematode worm Caenorhabditis elegans
10.3389/fmicb.2015.00137
Bacteriophage ϕMAM1, a viunalikevirus, is a broad-host-range, high-efficiency generalized transducer that infects environmental and clinical isolates of the enterobacterial genera Serratia and Kluyvera
10.1128/AEM.01546-14
Viunalikeviruses are environmentally common agents of horizontal gene transfer in pathogens and biocontrol bacteria
10.1038/ismej.2014.150
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1
10.1111/1462-2920.12037
Metabolic potential of the organic-solvent tolerant Pseudomonas putidaDOT-T1E deduced from its annotated genome
10.1111/1751-7915.12061
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants
10.1016/j.febslet.2012.07.031
Bacterial Biosynthetic Gene Clusters Encoding the Anti-cancer Haterumalide Class of Molecules BIOGENESIS OF THE BROAD SPECTRUM ANTIFUNGAL AND ANTI-OOMYCETE COMPOUND, OOCYDIN A
10.1074/jbc.M112.401026
Complete genome sequence of Serratia plymuthica bacteriophage ΦMAM1
10.1128/JVI.02702-12
Bacterial chemotaxis towards aromatic hydrocarbons in Pseudomonas
10.1111/j.1462-2920.2011.02493.x
Complete Genome of the Plant Growth-Promoting Rhizobacterium Pseudomonas putida BIRD-1
10.1128/JB.01281-10
Cyclic diguanylate turnover mediated by the sole GGDEF/EAL response regulator in Pseudomonas putida: its role in the rhizosphere and an analysis of its target processes
10.1111/j.1462-2920.2011.02499.x
The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment
10.1111/j.1462-2920.2011.02492.x
Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation
10.1111/j.1758-2229.2009.00091.x
Involvement of ethylene in seed physiology
10.1016/j.plantsci.2008.01.014
Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere
10.1186/gb-2007-8-9-r179
Temperature and pyoverdine-mediated iron acquisition control surface motility of Pseudomonas putida
10.1111/j.1462-2920.2007.01286.x
Genetic dissection of the regulatory network associated with high c-di-GMP levels in Pseudomonas putida KT2440
10.3389/fmicb.2016.01093
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.
10.1128/genomea.00373-16
Biosynthesis of the acetyl-coA carboxylase-inhibiting antibiotic, andrimid in Serratia is regulated by hfq and the LysR-type transcriptional regulator, admX
10.1111/1462-2920.13241
A plasmid-transposon hybrid mutagenesis system effective in a broad range of enterobacteria
10.3389/fmicb.2015.01442
Assessment of the contribution of chemoreceptor-based signalling to biofilm formation
10.1111/1462-2920.13170
Identification of ligands for bacterial sensor proteins
10.1007/s00294-015-0528-4
McpQ is a specific citrate chemoreceptor that responds preferentially to citrate/metal ion complexes
10.1111/1462-2920.13030
Identification of a Chemoreceptor for C2 and C3 Carboxylic Acids.
10.1128/aem.01529-15
Biosynthesis of the antifungal haterumalide, oocydin A, in Serratia, and its regulation by quorum sensing, RpoS and Hfq
10.1111/1462-2920.12839
A technology for the investigation of biofilm transmission under shearing pressures
10.1111/1751-7915.12848
Metabolic value chemoattractants are preferentially recognized at broad ligand range chemoreceptor of Pseudomonas putida KT2440
10.3389/fmicb.2017.00990
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.
10.1128/genomea.01752-16
Chemoreceptor-based signal sensing
10.1016/j.copbio.2016.11.021
The effect of bacterial chemotaxis on host infection and pathogenicity
10.1093/femsre/fux052
Novel pressure sensors and bioreporters in the synthetic biology era
10.1111/1462-2920.14019
The activity of the C4-dicarboxylic acid chemoreceptor of Pseudomonas aeruginosa is controlled by chemoattractants and antagonists
10.1038/s41598-018-20283-7
High-throughput screening to identify chemoreceptor ligands
10.1007/978-1-4939-7577-8_23
Shedding light into the mechanisms of formation and resuscitation of persistent bacterial cells
10.1111/1462-2920.14334
Structural Basis for Polyamine Binding at the dCACHE Domain of the McpU Chemoreceptor from Pseudomonas putida
10.1016/j.jmb.2018.05.008
Functional Annotation of Bacterial Signal Transduction Systems: Progress and Challenges
10.3390/ijms19123755
High-affinity chemotaxis to histamine mediated by the TlpQ chemoreceptor of the human pathogen pseudomonas aeruginosa
10.1128/mBio.01894-18
An auxin controls bacterial antibiotics production
10.1093/nar/gky766
Training bacteria to produce environmentally friendly polymers of industrial and medical relevance
10.1111/1751-7915.13470
The involvement of McpB chemoreceptor from Pseudomonas aeruginosa PAO1 in virulence
10.1038/s41598-019-49697-7
The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN
10.1128/mbio.02334-18
Chemoperception of Specific Amino Acids Controls Phytopathogenicity in Pseudomonas syringae pv. tomato
10.1128/mbio.01868-19
Concentration Dependent Effect of Plant Root Exudates on the Chemosensory Systems of Pseudomonas putida KT2440
10.3389/fmicb.2019.00078
Chemical fertilization: a short‐term solution for plant productivity?
10.1111/1751-7915.13515
Metabolic Responses of Plants Upon Different Plant-Pathogen Interactions
10.1016/B978-0-12-812689-9.00010-8
Ethylene: Role in plants under environmental stress
10.1007/978-1-4614-8600-8_7
Using Genomics to Unveil Bacterial Determinants of Rhizosphere Life Style
10.1002/9781118297674.ch2
Determination of ligand profiles for pseudomonas aeruginosa solute binding proteins
10.3390/ijms20205156
Genome sequence of the oocydin a-producing rhizobacterium serratia plymuthica 4Rx5
10.1128/MRA.00997-18
How bacterial chemoreceptors evolve novel ligand specificities
10.1128/mBio.03066-19
Identification of a chemoreceptor in Pseudomonas aeruginosa that specifically mediates chemotaxis toward α-ketoglutarate
10.3389/fmicb.2016.01937
The use of isothermal titration calorimetry to unravel chemotactic signalling mechanisms
10.1111/1462-2920.15035
Mining for novel antibiotics in the age of antimicrobial resistance
10.1111/1751-7915.13662
The structural basis for signal promiscuity in a bacterial chemoreceptor
10.1111/febs.15580
Evidence for Pentapeptide-Dependent and Independent CheB Methylesterases
10.3390/ijms21228459
Pseudomonas aeruginosa as a Model To Study Chemosensory Pathway Signaling
10.1128/MMBR.00151-20
Amino acid sensor conserved from bacteria to humans
10.1101/2021.05.05.442820
Histamine: A Bacterial Signal Molecule
10.3390/ijms22126312
Facing crises in the 21st century: microfluidics approaches for antibiotic discovery
10.1111/1751-7915.13908
Zulema Udaondo
Udaondo Zulema
ORCID: 0000-0003-3445-6842
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli.
10.1111/1758-2229.12553
The pangenome of the genus Clostridium.
10.1111/1462-2920.13732
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.
10.1128/genomea.01752-16
Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.
10.3389/fmicb.2016.02100
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.
10.1111/1462-2920.13585
Pseudomonas putida as a platform for the synthesis of aromatic compounds.
10.1099/mic.0.000333
Specific Gene Loci of Clinical Pseudomonas putida Isolates.
10.1371/journal.pone.0147478
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.
10.1128/genomea.00373-16
First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid.
10.1111/1751-7915.12333
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium.
10.1128/genomea.00904-15
Analysis of the core genome and pangenome of Pseudomonas putida.
10.1111/1462-2920.13015
Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.
10.1016/j.syapm.2015.07.002
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics.
10.1111/1751-7915.12295
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida.
10.1093/femsre/fuv006
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.
10.1111/1462-2920.12775
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J.
10.1111/1758-2229.12245
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440.
10.1111/1758-2229.12167
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital.
10.1371/journal.pone.0081604
Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234.
10.1128/genomea.00496-13
Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.
10.1111/1751-7915.12061
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1.
10.1111/1462-2920.12037
Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS.
10.1371/journal.pone.0039390
Evolution of antibiotic resistance, catabolic pathways and niche colonization.
10.1111/j.1751-7915.2012.00335.x
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants.
10.1016/j.febslet.2012.07.031
Mining for novel antibiotics in the age of antimicrobial resistance.
10.1111/1751-7915.13662
Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries.
10.1111/1462-2920.15138
Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing.
10.1093/ofid/ofaa180
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide.
10.3389/fmicb.2020.00202
Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia.
10.1128/mra.01380-19
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.
10.1016/j.meegid.2019.103965
Microbiomes as the new keystone for life sciences development.
10.1111/1751-7915.13424
Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.
10.1128/mra.00222-19
Towards a better metabolic engineering reference: the microbial chassis.
10.1111/1751-7915.13363
Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5.
10.1128/mra.00997-18
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production.
10.1111/1751-7915.13269
Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators.
10.1111/1751-7915.13263
Fighting the enemy: one health approach against microbial resistance
10.1111/1751-7915.13587
Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure
10.3390/metabo11080540
Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon
10.3390/life11080862
