Draft genome sequence of Phaeomoniella chlamydospora strain RR-HG1, a grapevine trunk disease (esca)-related member of the Ascomycota
Antonielli, L.
Compant, S.
Strauss, J.
Sessitsch, A.
Berger, H.
Genome Announcements, 2014
Joseph Strauss
Strauss Joseph
ORCID: 0000-0003-0474-6267
Nitric oxide synthesis by nitrate reductase is regulated during development in Aspergillus.
10.1111/mmi.13211
Interaction of Yna1 and Yna2 Is Required for Nuclear Accumulation and Transcriptional Activation of the Nitrate Assimilation Pathway in the Yeast Hansenula polymorpha.
10.1371/journal.pone.0135416
Reversible Oxidation of a Conserved Methionine in the Nuclear Export Sequence Determines Subcellular Distribution and Activity of the Fungal Nitrate Regulator NirA.
10.1371/journal.pgen.1005297
Deciphering the Niches of Colonisation of Vitis vinifera L. by the Esca-Associated Fungus Phaeoacremonium aleophilum Using a gfp Marked Strain and Cutting Systems.
10.1371/journal.pone.0126851
KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in Aspergillus nidulans.
10.1111/mmi.12977
Destructuring plant biomass: focus on fungal and extremophilic cell wall hydrolases.
10.1016/j.plantsci.2015.02.010
Fungi treated with small chemicals exhibit increased antimicrobial activity against facultative bacterial and yeast pathogens.
10.1155/2014/540292
The histone acetyltransferase GcnE (GCN5) plays a central role in the regulation of Aspergillus asexual development.
10.1534/genetics.114.165688
Sensitivity of Aspergillus nidulans to the cellulose synthase inhibitor dichlobenil: insights from wall-related genes' expression and ultrastructural hyphal morphologies.
10.1371/journal.pone.0080038
Small chemical chromatin effectors alter secondary metabolite production in Aspergillus clavatus.
10.3390/toxins5101723
Pseudo-constitutivity of nitrate-responsive genes in nitrate reductase mutants.
10.1016/j.fgb.2013.02.003
Overexpression of the Aspergillus nidulans histone 4 acetyltransferase EsaA increases activation of secondary metabolite production.
10.1111/j.1365-2958.2012.08195.x
The chromatin code of fungal secondary metabolite gene clusters.
10.1007/s00253-012-4208-8
Heterochromatin influences the secondary metabolite profile in the plant pathogen Fusarium graminearum.
10.1016/j.fgb.2011.11.002
Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation.
10.1073/pnas.1103523108
Community profiling and gene expression of fungal assimilatory nitrate reductases in agricultural soil.
10.1038/ismej.2011.53
Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism.
10.1111/j.1365-2958.2010.07363.x
Regulation of secondary metabolism by chromatin structure and epigenetic codes.
10.1016/j.fgb.2010.07.009
The effect of resource quantity and resource stoichiometry on microbial carbon-use-efficiency.
10.1111/j.1574-6941.2010.00912.x
Distinct roles for Caf1, Ccr4, Edc3 and CutA in the co-ordination of transcript deadenylation, decapping and P-body formation in Aspergillus nidulans.
10.1111/j.1365-2958.2010.07118.x
Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans.
10.1111/j.1365-2958.2010.07051.x
Chromatin-level regulation of biosynthetic gene clusters.
10.1038/nchembio.177
Functional characterization of the Aspergillus nidulans methionine sulfoxide reductases (msrA and msrB).
10.1016/j.fgb.2009.01.004
A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions.
10.1093/nar/gkp037
Dissecting individual steps of nitrogen transcription factor cooperation in the Aspergillus nidulans nitrate cluster.
10.1111/j.1365-2958.2008.06359.x
Nucleosome positioning and histone H3 acetylation are independent processes in the Aspergillus nidulans prnD-prnB bidirectional promoter.
10.1128/EC.00184-07
N-glycan modification in Aspergillus species.
10.1128/AEM.01058-07
Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans.
10.1128/MCB.00761-06
Opposing signals differentially regulate transcript stability in Aspergillus nidulans.
10.1111/j.1365-2958.2006.05383.x
The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA.
10.1111/j.1365-2958.2005.04957.x
Metabolically independent and accurately adjustable Aspergillus sp. expression system.
10.1128/AEM.71.2.672-678.2005
A paradoxical mutant GATA factor.
10.1128/EC.3.2.393-405.2004
Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans.
10.1046/j.1365-2958.2002.02911.x
RcoA has pleiotropic effects on Aspergillus nidulans cellular development.
10.1046/j.1365-2958.2001.02332.x
Glucose does not activate the plasma-membrane-bound H+-ATPase but affects pmaA transcript abundance in Aspergillus nidulans.
10.1007/s002030000212
The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level.
10.1046/j.1365-2958.1999.01341.x
The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter.
10.1093/emboj/18.6.1584
In situ detection of protein-DNA interactions in filamentous fungi by in vivo footprinting.
10.1093/nar/26.16.3862
Mycoparasitic interaction relieves binding of the Cre1 carbon catabolite repressor protein to promoter sequences of the ech42 (endochitinase-encoding) gene in Trichoderma harzianum.
10.1073/pnas.93.25.14868
Cre1, the carbon catabolite repressor protein from Trichoderma reesei.
10.1016/0014-5793(95)01255-5
The bgl1 gene of Trichoderma reesei QM 9414 encodes an extracellular, cellulose-inducible beta-glucosidase involved in cellulase induction by sophorose.
10.1111/j.1365-2958.1995.tb02430.x
Molecular diversity of fungal communities in agricultural soils from Lower Austria.
10.1007/s13225-010-0053-1
Carbon catabolite repression of xylanase I (xyn1) gene expression in Trichoderma reesei.
10.1046/j.1365-2958.1996.00094.x
A novel stable isotope labelling assisted workflow for improved untargeted LC-HRMS based metabolomics research.
10.1007/s11306-013-0611-0
Interactions between accumulation of trace elements and macronutrients in Salix caprea after inoculation with rhizosphere microorganisms.
10.1016/j.chemosphere.2011.05.002
Plants control the seasonal dynamics of microbial N cycling in a beech forest soil by belowground C allocation.
10.1890/i0012-9658-92-5-1036
Identification of heavy metal regulated genes from the root associated ascomycete Cadophora finlandica using a genomic microarray.
10.1016/j.mycres.2009.09.005
A temperature-sensitive expression system based on the Geobacillus stearothermophilus NRS 2004/3a sgsE surface-layer gene promoter.
10.1042/BA20070083
Cadophora finlandia and Phialocephala fortinii: Agrobacterium-mediated transformation and functional GFP expression.
10.1016/j.mycres.2007.05.002
S-layer glycan-specific loci on the chromosome of Geobacillus stearothermophilus NRS 2004/3a and dTDP-L-rhamnose biosynthesis potential of G. stearothermophilus strains.
10.1099/mic.0.26672-0
Valproic Acid Induces Antimicrobial Compound Production in Doratomyces microspores.
10.3389/fmicb.2016.00510
Chromatin immunoprecipitation analysis in filamentous fungi.
10.1007/978-1-62703-122-6_16
Draft Genome Sequence of Phaeomoniella chlamydospora Strain RR-HG1, a Grapevine Trunk Disease (Esca)-Related Member of the Ascomycota.
10.1128/genomeA.00098-14
Diversity and structure of ectomycorrhizal and co-associated fungal communities in a serpentine soil.
10.1007/s00572-008-0189-y
A novel ¹⁵N tracer model reveals: Plant nitrate uptake governs nitrogen transformation rates in agricultural soils
10.1016/j.soilbio.2012.10.010
Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment.
10.1111/j.1574-6941.2010.00970.x
Butyrate influences intracellular levels of adenine and adenine derivatives in the fungus Penicillium restrictum.
10.1016/j.micres.2016.12.013
KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans.
10.1371/journal.pgen.1006222
A WDR Gene Is a Conserved Member of a Chitin Synthase Gene Cluster and Influences the Cell Wall in Aspergillus nidulans.
10.3390/ijms17071031
Lack of the COMPASS Component Ccl1 Reduces H3K4 Trimethylation Levels and Affects Transcription of Secondary Metabolite Genes in Two Plant-Pathogenic Fusarium Species.
10.3389/fmicb.2016.02144
Comparison of Fusarium graminearum Transcriptomes on Living or Dead Wheat Differentiates Substrate-Responsive and Defense-Responsive Genes.
10.3389/fmicb.2016.01113
High-throughput format for the phenotyping of fungi on solid substrates
10.1038/s41598-017-03598-9
Nitric oxide in fungi: is there NO light at the end of the tunnel?
10.1007/s00294-016-0574-6
Deletion of the celA gene in Aspergillus nidulans triggers overexpression of secondary metabolite biosynthetic genes.
10.1038/s41598-017-05920-x
A robust high-throughput fungal biosensor assay for the detection of estrogen activity.
10.1016/j.steroids.2017.07.005
Validation of a quantitative PCR based detection system for indoor mold exposure assessment in bioaerosols
10.1039/C8EM00253C
Foreword
10.1002/9781118958308
β-Glucosidase and cellulase formation by a Trichoderma reesei mutant defective in constitutive β-glucosidase formation
10.1099/00221287-136-7-1321
Biogeography and phenotypic variation in Trichoderma sect. Longibrachiatum and associated Hypocrea species
10.1017/S0953756296002845
Saksenaea dorisiae sp. nov., a new opportunistic pathogenic fungus from Europe
10.1155/2019/6253829
Chromatin mapping identifies BasR, a key regulator of bacteria-triggered production of fungal secondary metabolites
10.7554/eLife.40969
Culturable bacteria from Zn- and Cd-accumulating Salix caprea with differential effects on plant growth and heavy metal availability
10.1111/j.1365-2672.2010.04670.x
Chromatin-level regulation of biosynthetic gene clusters (Nature Chemical Biology (2009) 5, (462-464))
10.1038/nchembio0909-696a
The regulator of nitrate assimilation in ascomycetes is a dimer which binds a nonrepeated, asymmetrical sequence
10.1128/MCB.18.3.1339
A constitutive active allele of the transcription factor Msn2 mimicking low PKA activity dictates metabolic remodeling in yeast
10.1091/mbc.E18-06-0389
The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally
10.1128/MCB.15.10.5688
nirA, the pathway-specific regulatory gene of nitrate assimilation in Aspergillus nidulans, encodes a putative GAL4-type zinc finger protein and contains four introns in highly conserved regions
10.1128/MCB.11.11.5746
A cost-effective high-throughput microcosm system for studying nitrogen dynamics at the plant-microbe-soil interface
10.1007/s11104-008-9809-8
Plants control the seasonal dynamics of microbial N cycling in a beech forest soil by belowground C allocation
10.1890/10-1011.1
Lignocellulosic biomass: Biosynthesis, degradation, and industrial utilization
10.1002/elsc.201400196
Antifungal susceptibility of yeast bloodstream isolates collected during a 10-year period in Austria
10.1111/myc.12892
Greenhouse gas fluxes respond to different N fertilizer types due to altered plant-soil-microbe interactions
10.1007/s11104-010-0597-6
A novel laminar-flow-based bioaerosol test system to determine biological sampling efficiencies of bioaerosol samplers
10.1080/02786826.2018.1562151
Metapochonia lutea, a new species isolated from the danube river in Austria
10.1127/nova_hedwigia/2018/0487
Competition of Candida glabrata against Lactobacillus is Hog1 dependent
10.1111/cmi.12943
Short-term competition between crop plants and soil microbes for inorganic N fertilizer
10.1016/j.soilbio.2009.11.019
Diversification of transcriptional regulation determines subfunctionalization of paralogous branched chain aminotransferases in the yeast saccharomyces cerevisiae
10.1534/genetics.117.300290
Nitric oxide homeostasis is required for light-dependent regulation of conidiation in Aspergillus
10.1016/j.fgb.2020.103337
Activation of silent secondary metabolite gene clusters by nucleosome map-guided positioning of the synthetic transcription factor VPR-dCas9
10.1101/2020.04.02.022053
Livio Antonielli
Antonielli Livio
ORCID: 0000-0002-7140-8359
Draft genome sequence of the root-colonizing fungus Trichoderma harzianum B97
10.1128/genomeA.00137-17
Candida coquimbonensis sp. nov., a link between Australian and Nearctic/Neotropical Phaffomyces
10.1099/ijs.0.045294-0
Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage
10.1038/s41598-017-02314-x
Interkingdom transfer of the acne-causing agent, propionibacterium acnes, from human to grapevine
10.1093/molbev/msu075
The draft genome sequence of Paenibacillus polymyxa strain CCI-25 encompasses high potential for secondary metabolite production
10.1128/genomeA.00366-16
Influence of cell parameters in Fourier Transform InfraRed spectroscopy analysis of whole yeast cells
10.1039/c0an00515k
Leaf treatments with a protein-based resistance inducer partially modify phyllosphere microbial communities of grapevine
10.3389/fpls.2016.01053
Influence of cell geometry and number of replicas in the reproducibility of whole cell FTIR analysis
10.1039/c0an00127a
A new approach to modify plant microbiomes and traits by introducing beneficial bacteria at flowering into progeny seeds
10.3389/fmicb.2017.00011
Bacterial endophytic communities in the grapevine depend on pest management
10.1371/journal.pone.0112763
Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants
10.1111/1462-2920.13618
Yamadazyma terventina sp. nov., a yeast species of the Yamadazyma clade from Italian olive oils
10.1099/ijs.0.045898-0
Effect of pH on potassium metabisulphite biocidic activity against yeast and human cell cultures
10.1016/j.foodchem.2012.03.025
Agromyces aureus sp. nov., isolated from the rhizosphere of Salix caprea L. grown in a heavy-metal-contaminated soil
10.1099/ijsem.0.001260
Resilience of the natural phyllosphere microbiota of the grapevine to chemical and biological pesticides
10.1128/AEM.00415-14
Gut microbiota dysbiosis associated with glucose metabolism disorders and the metabolic syndrome in older adults
10.3920/BM2016.0184
Draft genome sequence of Phaeomoniella chlamydospora strain RR-HG1, a grapevine trunk disease (esca)-related member of the Ascomycota
10.1128/genomeA.00098-14
Taxonomic structure of the yeasts and lactic acid bacteria microbiota of pineapple (Ananas comosus L. Merr.) and use of autochthonous starters for minimally processing
10.1016/j.fm.2009.11.012
Draft genome sequences of 10 Microbacterium spp., with emphasis on heavy metalcontaminated environments
10.1128/genomeA.00432-15
Preliminary prospection of the yeast biodiversity on apple and pear surfaces from Northern Italy orchards
10.1007/s13213-011-0220-y
Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake
10.1016/j.soilbio.2015.08.038
Correction: Compant et al., "Draft genome sequence of the root-colonizing fungus Trichoderma harzianum B97" [Genome Announc, 5, 13, (2017) (e00137-17)] https://doi.org/10.1128/genomeA.00137-17
10.1128/genomeA.00549-17
Soil microbiota respond to green manure in organic vineyards
10.1111/jam.13606
Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33Tand comparison with related Actinobacteria
10.1186/s40793-016-0217-z
Effect of different heterotrophic plate count methods on the estimation of the composition of the culturable microbial community
10.7717/peerj.862
High-quality draft genome sequence of an endophytic Pseudomonas viridiflava strain with herbicidal properties against its host, the weed Lepidium draba L
10.1128/genomeA.01170-16
Kazachstania ichnusensis sp. nov., a diploid homothallic ascomycetous yeast from Sardinian lentisk rhizosphere
10.1099/ijs.0.032243-0
The lactic acid bacteria and yeast microbiota of eighteen sourdoughs used for the manufacture of traditional Italian sweet leavened baked goods
10.1016/j.ijfoodmicro.2013.02.010
Lactic acid bacterium and yeast microbiotas of 19 sourdoughs used for traditional/typical Italian breads: Interactions between ingredients and microbial species diversity
10.1128/AEM.07721-11
