New molecular tools for enhancing methane production, explaining thermodynamically limited lifestyles and other important biotechnological issues
Daniels, C. Michán, C. Ramos, J.L.
Microbial Biotechnology, 2009
https://doi.org/10.1111/j.1751-7915.2009.00134.x
Juan L. Ramos
Ramos Juan L.
ORCID: 0000-0002-8731-7435
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J 10.1111/1758-2229.12245
A set of activators and repressors control peripheral glucose pathways in Pseudomonas putida to yield a common central intermediate 10.1128/JB.01726-07
Paralogous chemoreceptors mediate chemotaxis towards protein amino acids and the non-protein amino acid gamma-aminobutyrate (GABA) 10.1111/mmi.12255
Identification of products resulting from the biological reduction of 2,4,6-trinitrotoluene, 2,4-dinitrotoluene, and 2,6-dinitrotoluene by Pseudomonas sp. 10.1021/es950824u
Bacterial chemotaxis towards aromatic hydrocarbons in Pseudomonas 10.1111/j.1462-2920.2011.02493.x
Two Levels of Cooperativeness in the Binding of TodT to the tod Operon Promoter 10.1016/j.jmb.2008.10.011
PpoR, an orphan LuxR-family protein of Pseudomonas putida KT2440, modulates competitive fitness and surface motility independently of N-acylhomoserine lactones 10.1111/j.1758-2229.2010.00190.x
Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene 10.1074/jbc.M509848200
Metabolism of 2,4,6-trinitrotoluene by Pseudomonas sp. JLR11 10.1021/es9803308
Monitoring drivers’ ventilation using an electrical bioimpedance system: Tests in a controlled environment 10.1007/978-3-662-44485-62
High specificity in CheR methyltransferase function: CheR2 of pseudomonas putida is essential for chemotaxis, whereas CheR1 is involved in biofilm formation 10.1074/jbc.M113.472605
Twenty one important things you should know 10.1111/j.1751-7915.2009.00128.x
GtrS and GltR form a two-component system: The central role of 2-ketogluconate in the expression of exotoxin A and glucose catabolic enzymes in Pseudomonas aeruginosa 10.1093/nar/gku496
Role of iron and the TonB system in colonization of corn seeds and roots by Pseudomonas putida KT2440 10.1111/j.1462-2920.2004.00720.x
Involvement of ammonium metabolism in the nitrate inhibition of nitrogen fixation in Anabaena sp. strain ATCC 33047 10.1007/BF00404777
Cellular XylS Levels Are a Function of Transcription of xylS from Two Independent Promoters and the Differential Efficiency of Translation of the Two mRNAs 10.1128/JB.186.6.1898-1901.2003
Tactic responses to pollutants and their potential to increase biodegradation efficiency 10.1111/jam.12076
Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E 10.1128/JB.183.13.3967-3973.2001
Erratum: Analysis of Pseudomonas putida KT2440 gene expression in the maize rhizosphere: In vivo expression technology capture and identification of root-activated promoters (Journal of Bacteriology (2005) 187, 12 (4033-4041)) 10.1128/JB.187.15.5504.2005
Sugar (ribose), spice (peroxidase) and all things nice (laccase hair-dyes) 10.1111/j.1751-7915.2010.00167.x
Photoproduction of ammonia from nitrate by Anacystis nidulans cells 10.1016/0005-2728(82)90303-6
Construction of a prototype two-component system from the phosphorelay system TodS/TodT 10.1093/protein/gzs001
Diversity of small RNAs expressed in Pseudomonas species 10.1111/1758-2229.12233
Identification and characterization of the PhhR regulon in Pseudomonas putida 10.1111/j.1462-2920.2009.02124.x
Role of the ptsN gene product in catabolite repression of the Pseudomonas putida TOL toluene degradation pathway in chemostat cultures 10.1128/AEM.01067-06
Assimilation of nitrogen from nitrite and trinitrotoluene in Pseudomonas putida JLR11 10.1128/JB.187.1.396-399.2005
Gef gene therapy enhances the therapeutic efficacy of doxorubicin to combat growth of MCF-7 breast cancer cells 10.1007/s00280-009-1135-1
Metabolic potential of the organic-solvent tolerant Pseudomonas putidaDOT-T1E deduced from its annotated genome 10.1111/1751-7915.12061
Directed evolution, natural products for cancer chemotherapy, and micro-biosensing robots 10.1111/j.1751-7915.2011.00267.x
Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage 10.1038/ismej.2013.242
Role of Pseudomonas putida tol-oprL gene products in uptake of solutes through the cytoplasmic membrane 10.1128/JB.185.16.4707-4716.2003
Roles of effectors in XylS-dependent transcription activation: Intramolecular domain derepression and DNA binding 10.1128/JB.01784-07
Editorial: Variations on transcriptional and post-transcriptional processes in bacteria 10.1111/j.1574-6976.2010.00245.x
In-vivo measurements of heart ischemia using transoesophageal electrical impedance 10.1007/978-3-540-89208-3_278
Synergistic antitumoral effect of combination E gene therapy and Doxorubicin in MCF-7 breast cancer cells 10.1016/j.biopha.2011.01.002
The xylS gene positive regulator of TOL plasmid pWWO: Identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon 10.1007/BF00331600
Microorganisms and explosives: Mechanisms of nitrogen release from TNT for use as an n-source for growth 10.1021/es803372n
E phage gene transfection enhances sensitivity of lung and colon cancer cells to chemotherapeutic agents 10.3892/ijo-00000803
The multidrug efflux regulator TtgV recognizes a wide range of structurally different effectors in solution and complexed with target DNA: Evidence from isothermal titration calorimetry 10.1074/jbc.M500783200
Responses of gram-negative bacteria to certain environmental stressors 10.1016/S1369-5274(00)00183-1
Explorative probes and biomarkers, chronic Salmonella infections and future vaccines 10.1111/j.1751-7915.2011.00315.x
The heat, drugs and knockout systems of Microbial Biotechnology 10.1111/j.1751-7915.2009.00144.x
Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil 10.1111/j.1751-7915.2012.00358.x
A set of genes encoding a second toluene efflux system in Pseudomonas putida DOT-T1E is linked to the tod genes for toluene metabolism 10.1128/JB.182.4.937-943.2000
Evolution of antibiotic resistance, catabolic pathways and niche colonization 10.1111/j.1751-7915.2012.00335.x
Global and cognate regulators control the expression of the organic solvent efflux pumps TtgABC and TtgDEF of Pseudomonas putida 10.1046/j.1365-2958.2001.02310.x
Bioremediation of 2,4,6-trinitrotoluene by bacterial nitroreductase expressing transgenic aspen 10.1021/es801231w
Genes for Carbon metabolism and the ToxA virulence factor in pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS 10.1371/journal.pone.0039390
From the test tube to the environment-and back 10.1111/j.1462-2920.2012.02896.x
Differential transcriptional response to antibiotics by Pseudomonas putidaDOT-T1E 10.1111/1462-2920.12775
Identification of new residues involved in intramolecular signal transmission in a prokaryotic transcriptional repressor 10.1128/JB.00589-13
Special issue: The Rhizosphere: Editorial 10.1111/j.1462-2920.2005.00931.x
Two glutaric acid derivatives from olives 10.1016/S0031-9422(97)01066-2
Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene 10.1128/JB.187.17.5937-5945.2005
Regression of established subcutaneous B16-F10 murine melanoma tumors after gef gene therapy associated with the mitochondrial apoptotic pathway 10.1111/j.1600-0625.2009.00914.x
Cyclopropane fatty acids are involved in organic solvent tolerance but not in acid stress resistance in Pseudomonas putida DOT-T1E 10.1111/j.1751-7915.2009.00084.x
Plant-dependent active biological containment system for recombinant rhizobacteria 10.1046/j.1462-2920.2003.00544.x
The enigma of cytosolic two-component systems: A hypothesis 10.1111/j.1758-2229.2009.00020.x
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics 10.1111/1751-7915.12295
Characterization of the RND family of multidrug efflux pumps: In silico to in vivo confirmation of four functionally distinct subgroups 10.1111/j.1751-7915.2010.00189.x
Continuous cultures of Pseudomonas putida mt-2 overcome catabolic function loss under real case operating conditions 10.1007/s00253-009-1928-5
Controlling bacterial physiology for optimal expression of gene reporter constructs 10.1016/j.copbio.2005.12.001
REP code: Defining bacterial identity in extragenic space 10.1111/j.1462-2920.2004.00704.x
Fatty acid-mediated signalling between two Pseudomonas species 10.1111/j.1758-2229.2012.00349.x
Domain cross-talk during effector binding to the multidrug binding TTGR regulator 10.1074/jbc.M110.113282
In vivo and in vitro evidence that TtgV is the specific regulator of the TtgGHI multidrug and solvent efflux pump of Pseudomonas putida 10.1128/JB.185.16.4755-4763.2003
Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1 10.1128/JB.01281-10
Physiological Characterization of Pseudomonas putida DOT-T1E Tolerance to p-Hydroxybenzoate 10.1128/AEM.67.9.4338-4341.2001
The RpoT regulon of Pseudomonas putida DOT-T1E and its role in stress endurance against solvents 10.1128/JB.00950-06
Functional analysis of new transporters involved in stress tolerance in Pseudomonas putida DOT-T1E 10.1111/j.1758-2229.2009.00093.x
Hierarchical Binding of the TodT Response Regulator to Its Multiple Recognition Sites at the tod Pathway Operon Promoter 10.1016/j.jmb.2007.12.004
Retrotransfer of DNA in the rhizosphere 10.1046/j.1462-2920.2000.00109.x
Sequential XylS-CTD binding to the Pm promoter induces DNA bending prior to activation 10.1128/JB.00165-10
The Transcriptional Repressor TtgV Recognizes a Complex Operator as a Tetramer and Induces Convex DNA Bending 10.1016/j.jmb.2007.04.022
Transcription activation by a variety of AraC/XylS family activators does not depend on the class II-specific activation determinant in the N-terminal domain of the RNA polymerase alpha subunit 10.1128/JB.182.24.7075-7077.2000
Optimization of the Palindromic Order of the TtgR Operator Enhances Binding Cooperativity 10.1016/j.jmb.2007.04.025
In vivo role of FdhD and FdmE in formate metabolism in Pseudomonas putida: Redundancy and expression in the stationary phase 10.1111/j.1758-2229.2009.00032.x
Regulation of nitrogenase levels in Anabaena sp. ATCC 33047 and other filamentous cyanobacteria 10.1007/BF00423268
Genetic engineering of a highly solvent-tolerant Pseudomonas putida strain for biotransformation of toluene to p-hydroxybenzoate 10.1128/AEM.69.9.5120-5127.2003
Purification and characterization of glutamine synthetase from the unicellular cynabacterium Anacystis nidulans 10.1016/0304-4165(85)90247-8
Designing bacteria for the degradation of nitro- and chloroaromatic pollutants 10.1007/s001140050273
Responses of Pseudomonas putida to toxic aromatic carbon sources 10.1016/j.jbiotec.2012.01.026
A general profile for the MerR family of transcriptional regulators constructed using the semi-automated Provalidator tool 10.1111/j.1758-2229.2009.00067.x
Comparative genomic analysis of solvent extrusion pumps in Pseudomonas strains exhibiting different degrees of solvent tolerance 10.1007/s00792-003-0331-x
Intramolecular signal transmission in a tetrameric repressor of the IclR family 10.1073/pnas.1018894108
New molecular techniques for pathogen analysis, in silico determination of RND efflux pump substrate specificity, shotgun proteomic monitoring of bioremediation and yeast bio-applications 10.1111/j.1751-7915.2010.00225.x
In vivo gene expression of Pseudomonas putidaKT2440 in the rhizosphere of different plants 10.1111/1751-7915.12037
A double mutant of Pseudomonas putida JLR11 deficient in the synthesis of the nitroreductase PnrA and assimilatory nitrite reductase NasB is impaired for growth on 2,4,6-trinitrotoluene (TNT) 10.1111/j.1462-2920.2006.01012.x
The sensor kinase TodS operates by a multiple step phosphorelay mechanism involving two autokinase domains 10.1074/jbc.M900521200
Microbial goods from single cells and metagenomes 10.1016/j.mib.2008.05.003
The methionine biosynthetic pathway from homoserine in Pseudomonas putida involves the metW, metX, metZ, metH and metE gene products 10.1007/s002030100293
Involvement of cyclopropane fatty acids in the response of Pseudomonas putida KT2440 to freeze-drying 10.1128/AEM.72.1.472-477.2006
Engineering Biological Approaches for Detection of Toxic Compounds: A New Microbial Biosensor Based on the Pseudomonas putida TtgR Repressor 10.1007/s12033-015-9849-2
Members of the IclR family of bacterial transcriptional regulators function as activatorsand/or repressors 10.1111/j.1574-6976.2005.00008.x
Environmental biotechnology 10.1016/j.copbio.2013.04.002
Analysis of Pseudomonas putida KT2440 gene expression in the maize rhizosphere: In vitro expression technology capture and identification of root-activated promoters 10.1128/JB.187.12.4033-4041.2005
Biotransformation in double-phase systems: Physiological responses of Pseudomonas putida DOT-T1E to a double phase made of aliphatic alcohols and biosynthesis of substituted catechols 10.1128/AEM.70.6.3637-3643.2004
Leucines 193 and 194 at the N-terminal domain of the XylS protein, the positive transcriptional regulator of the TOL meta-cleavage pathway, are involved in dimerization 10.1128/JB.185.10.3036-3041.2003
Environmental Microbiology meets Microbial Biotechnology 10.1111/j.1751-7915.2008.00068.x
Temperature and pyoverdine-mediated iron acquisition control surface motility of Pseudomonas putida 10.1111/j.1462-2920.2007.01286.x
Ventilation and heart rate monitoring in drivers using a contactless electrical bioimpedance system 10.1088/1742-6596/434/1/012047
Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals 10.1073/pnas.0701547104
Rhizoremediation of lindane by root-colonizing Sphingomonas 10.1111/j.1751-7915.2007.00004.x
XylS-Pm Promoter Interactions through Two Helix-Turn-Helix Motifs: Identifying XylS Residues Important for DNA Binding and Activation 10.1016/j.jmb.2007.10.047
The nifH, nifM and nifN genes of Azotobacter vinelandii: Characterisation by Tn 5 mutagenesis and isolation from pLAFR1 gene banks 10.1007/BF00430445
Evidence for chemoreceptors with bimodular ligand-binding regions harboring two signal-binding sites 10.1073/pnas.1201400109
Residues 137 and 153 of XylS influence contacts with the C-terminal domain of the RNA polymerase α subunit 10.1006/bbrc.2001.5615
Exploring the rhizospheric and endophytic bacterial communities of Acer pseudoplatanus growing on a TNT-contaminated soil: towards the development of a rhizocompetent TNT-detoxifying plant growth promoting consortium 10.1007/s11104-014-2260-0
A two-partner secretion system is involved in seed and root colonization and iron uptake by Pseudomonas putida KT2440 10.1111/j.1462-2920.2005.00940.x
Multiple signals modulate the activity of the complex sensor kinase TodS 10.1111/1751-7915.12142
Microbial biotechnology: Biofuels, genotoxicity reporters and robust agro-ecosystems 10.1111/j.1751-7915.2010.00177.x
Transcriptional control by two interacting regulatory proteins: Identification of the PtxS binding site at PtxR 10.1093/nar/gkt773
Specific gene loci of clinical Pseudomonas putida isolates 10.1371/journal.pone.0147478
The TetR family of transcriptional repressors 10.1128/MMBR.69.2.326-356.2005
Novel BRAFI599Insmutation identified in a follicular variant of a papillary thyroid carcinoma: A molecular modeling approach 10.4158/EP13465.CR
OYE flavoprotein reductases initiate the condensation of TNT-derived intermediates to secondary diarylamines and nitrite 10.1021/es071449w
Lessons from the genome of a lithoautotroph: Making biomass from almost nothing 10.1128/JB.185.9.2690-2691.2003
Gene expression in Pseudomonas 10.1007/BF00328031
XylS activator and RNA polymerase binding sites at the Pm promoter overlap 10.1016/S0014-5793(02)02730-8
The XyIS-dependent Pm promoter is transcribed in vivo by RNA polymerase with σ32 or σ38 depending on the growth phase 10.1046/j.1365-2958.1999.01249.x
Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: Differential chemotactic response towards receptor ligands 10.1074/jbc.M110.110403
Single amino acids changes in the signal receptor domain of XylR resulted in mutants that stimulate transcription in the absence of effectors 10.1074/jbc.270.10.5144
Changes in myocardial electrical impedance in human heart graft rejection 10.1016/j.ejheart.2008.04.013
Physiological responses of Pseudomonas putida to formaldehyde during detoxification 10.1111/j.1751-7915.2007.00014.x
Pipelines for New Chemicals: A strategy to create new value chains and stimulate innovation-based economic revival in Southern European countries 10.1111/1462-2920.12337
The ttgGHI solvent efflux pump operon of Pseudomonas putida DOT-T1E is located on a large self-transmissible plasmid 10.1111/j.1462-2920.2007.01276.x
XylS domain interactions can be deduced from intraallelic dominance in double mutants of Pseudomonas putida 10.1007/BF00279387
Restoration of a Mediterranean forest after a fire: Bioremediation and rhizoremediation field-scale trial 10.1111/1751-7915.12138
A WbpL mutant of Pseudomonas putida DOT-T1E strain, which lacks the 0-antigenic side chain of lipopolysaccharides, is tolerant to organic solvent shocks 10.1007/s007920100176
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators 10.1146/annurev.micro.51.1.341
Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization 10.1016/S0378-1119(99)00113-4
Pseudomonas aeruginosa strain RW41 mineralizes 4-chlorobenzenesulfonate, the major polar by-product from DDT manufacturing 10.1111/j.1462-2920.2008.01575.x
Exploiting environmental niches and the potential of environmental microbes 10.1111/j.1758-2229.2009.00072.x
Mutations in each of the tol genes of Pseudomonas putida reveal that they are critical for maintenance of outer membrane stability 10.1128/JB.182.17.4764-4772.2000
A bioluminescent derivative of Pseudomonas putida KT2440 for deliberate release into the environment 10.1016/S0168-6496(00)00089-1
Respiration of 2,4,6-trinitrotoluene by Pseudomonas sp. strain JLR11 10.1128/JB.182.5.1352-1355.2000
Responses of Pseudomonas to small toxic molecules by a mosaic of domains 10.1016/j.mib.2009.02.001
The IclR family of transcriptional activators and repressors can be defined by a single profile 10.1110/ps.051857206
Bactericidal and bacteriostatic antibiotics and the Fenton reaction 10.1111/1751-7915.12120
Characterization of the Pseudomonas putida mobile genetic element ISPpu10: An occupant of repetitive extragenic palindromic sequences 10.1128/JB.188.1.37-44.2006
Type II hydride transferases from different microorganisms yield nitrite and diarylamines from polynitroaromatic compounds 10.1128/AEM.00388-08
Microbial Biotechnology: Evolution of your premier journal 10.1111/1751-7915.12009
Effector-repressor interactions, binding of a single effector molecule to the operator-bound TtgR homodimer mediates derepression 10.1074/jbc.M511095200
Cell density-dependent gene contributes to efficient seed colonization by Pseudomonas putida KT2440 10.1128/AEM.70.9.5190-5198.2004
Physiological and transcriptomic characterization of a fliA mutant of Pseudomonas putida KT2440 10.1111/j.1758-2229.2009.00084.x
Using Genomics to Unveil Bacterial Determinants of Rhizosphere Life Style 10.1002/9781118297674.ch2
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1 10.1111/1462-2920.12037
Involvement of the TonB system in tolerance to solvents and drugs in Pseudomonas putida DOT-T1E 10.1128/JB.183.18.5285-5292.2001
The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins 10.1073/pnas.0602902103
Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: Genomic and flux analysis 10.1128/JB.00203-07
Evidence for in situ crude oil biodegradation after the Prestige oil spill 10.1111/j.1462-2920.2005.00742.x
Simultaneous catabolite repression between glucose and toluene metabolism in Pseudomonas putida is channeled through different signaling pathways 10.1128/JB.00679-07
Fatty acid biosynthesis is involved in solvent tolerance in Pseudomonas putida DOT-T1E 10.1111/j.1462-2920.2004.00578.x
Crystal Structures of Multidrug Binding Protein TtgR in Complex with Antibiotics and Plant Antimicrobials 10.1016/j.jmb.2007.03.062
Cross-regulation between a novel two-component signal transduction system for catabolism of toluene in pseudomonas mendocina and the TodST system from pseudomonas putida 10.1128/JB.184.24.7062-7067.2002
Catabolism of Phenylalanine by Pseudomonas putida: The NtrC-family PhhR Regulator Binds to Two Sites Upstream from the phhA Gene and Stimulates Transcription with σ70 10.1016/j.jmb.2006.12.008
A two-component regulatory system integrates redox state and population density sensing in Pseudomonas putida 10.1128/JB.00868-08
Tolerance to sudden organic solvent shocks by soil bacteria and characterization of Pseudomonas putida strains isolated from toluene polluted sites 10.1021/es991171a
The davDT operon of Pseudomonas putida, involved in lysine catabolism, is induced in response to the pathway intermediate δ-aminovaleric acid 10.1128/JB.186.11.3439-3446.2004
Broad-host range expression vectors containing manipulated meta-cleavage pathway regulatory elements of the TOL plasmid 10.1016/0014-5793(88)81431-5
Removal of organic toxic chemicals in the rhizosphere and phyllosphere of plants 10.1111/j.1751-7915.2009.00090_13.x
Functional analysis of aromatic biosynthetic pathways in Pseudomonas putida KT2440 10.1111/j.1751-7915.2008.00062.x
Interactions of the XylS regulators with the C-terminal domain of the RNA polymerase α subunit influence the expression level from the cognate Pm promoter 10.1016/S0014-5793(01)02192-5
Taxonomic and Functional Metagenomic Profiling of the Microbial Community in the Anoxic Sediment of a Sub-saline Shallow Lake (Laguna de Carrizo, Central Spain) 10.1007/s00248-011-9903-y
Multiple and interconnected pathways for l-lysine catabolism in Pseudomonas putida KT2440 10.1128/JB.187.21.7500-7510.2005
Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440 10.1128/AAC.05398-11
Identification of conditionally essential genes for growth of Pseudomonas putida KT2440 on minimal medium through the screening of a genome-wide mutant library 10.1111/j.1462-2920.2010.02166.x
Subfunctionality of hydride transferases of the old yellow enzyme family of flavoproteins of Pseudomonas putida 10.1128/AEM.00386-08
TtgV Bound to a Complex Operator Site Represses Transcription of the Promoter for the Multidrug and Solvent Extrusion TtgGHI Pump 10.1128/JB.186.10.2921-2927.2004
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida 10.1111/j.1574-6976.2010.00249.x
Sensing of environmental signals: Classification of chemoreceptors according to the size of their ligand binding regions 10.1111/j.1462-2920.2010.02325.x
The Prc and RseP proteases control bacterial cell-surface signalling activity 10.1111/1462-2920.12371
Removal of nitrate from industrial wastewaters in a pilot plant by nitrate-tolerant Klebsiella oxytoca CECT 4460 and Arthrobacter globiformis CECT 4500 10.1002/(SICI)1097-0290(19980605)58:5<510::AID-BIT7>3.0.CO;2-G
Corrigendum: In vivo role of FdhD and FdmE in formate metabolism in Pseudomonas putida: Redundancy and expression in the stationary phase 10.1111/j.1758-2229.2009.00062.x
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital 10.1371/journal.pone.0081604
Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere 10.1186/gb-2007-8-9-r179
Adaptive drug resistance mediated by root-nodulation-cell division efflux pumps 10.1111/j.1469-0691.2008.02693.x
First- and second-generation biochemicals from sugars: Biosynthesis of itaconic acid 10.1111/1751-7915.12333
Photosynthetic production of ammonia 10.1007/BF01944528
Bioremediation of 2,4,6-trinitrotoluene under field conditions 10.1021/es062165z
Cloning, structure and expression of a pea cDNA clone coding for a photosynthetic fructose-1,6-bisphosphatase with some features different from those of the leaf chloroplast enzyme 10.1007/BF02411553
Plant-bacteria interactions in the removal of pollutants 10.1016/j.copbio.2012.09.011
Identification of reciprocal adhesion genes in pathogenic and non-pathogenic Pseudomonas 10.1111/j.1462-2920.2012.02732.x
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida 10.1093/femsre/fuv006
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants 10.1016/j.febslet.2012.07.031
Fate of Pseudomonas putida after release into lake water mesocosms: Different survival mechanisms in response to environmental conditions 10.1007/BF00165812
Field trial on removal of petroleum-hydrocarbon pollutants using a microbial consortium for bioremediation and rhizoremediation 10.1111/1758-2229.12174
Dual System to Reinforce Biological Containment of Recombinant Bacteria Designed for Rhizoremediation 10.1128/AEM.67.6.2649-2656.2001
Interspecies signalling: Pseudomonas putida efflux pump TtgGHI is activated by indole to increase antibiotic resistance 10.1111/1462-2920.12368
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray 10.1111/j.1462-2920.2005.00890.x
Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for Pseudomonas putida KT2440 via the NAH7 catabolic plasmid 10.1128/AEM.00619-12
Bacterial responses and interactions with plants during rhizoremediation 10.1111/j.1751-7915.2009.00113.x
In situ X-ray data collection from highly sensitive crystals of Pseudomonas putida PtxS in complex with DNA 10.1107/S1744309112028540
Critical nucleotides in the upstream region of the XylS-dependent TOL meta-cleavage pathway operon promoter as deduced from analysis of mutants 10.1074/jbc.274.4.2286
Transcriptional organization of the Pseudomonas putida tol-oprL genes 10.1128/JB.185.1.184-195.2003
Study of the TmoS/TmoT two-component system: Towards the functional characterization of the family of TodS/TodT like systems 10.1111/j.1751-7915.2011.00322.x
Biomonitoring of urinary metals in a population living in the vicinity of industrial sources: A comparison with the general population of Andalusia, Spain 10.1016/j.scitotenv.2008.08.041
Understanding butanol tolerance and assimilation in Pseudomonas putidaBIRD-1: An integrated omics approach 10.1111/1751-7915.12328
Solvent tolerance in Gram-negative bacteria 10.1016/j.copbio.2011.11.015
Mutational analysis of the highly conserved C-terminal residues of the XylS protein, a member of the AraC family of transcriptional regulators 10.1016/S0014-5793(00)01749-X
Redundancy of enzymes for formaldehyde detoxification in Pseudomonas putida 10.1128/JB.00076-09
Transcriptional control of the main aromatic hydrocarbon efflux pump in Pseudomonas 10.1111/j.1758-2229.2011.00255.x
RNA polymerase holoenzymes can share a single transcription start site for the Pm promoter: Critical nucleotides in the -7 to -18 region are needed to select between RNA polymerase with σ38 or σ32 10.1074/jbc.M505415200
Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01 10.1046/j.1462-2920.2002.00371.x
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440 10.1111/1758-2229.12167
Inhibition of growth and induction of apoptosis in human breast cancer by transfection of gef gene 10.1038/sj.bjc.6601064
Pseudomonas putida mutants in the exbBexbDtonB gene cluster are hypersensitive to environmental and chemical stressors 10.1111/j.1462-2920.2004.00595.x
Cyclic diguanylate turnover mediated by the sole GGDEF/EAL response regulator in Pseudomonas putida: Its role in the rhizosphere and an analysis of its target processes 10.1111/j.1462-2920.2011.02499.x
16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains 10.1111/j.1462-5822.2005.00820.x
Characterization of molecular interactions using isothermal titration calorimetry 10.1007/978-1-4939-0473-0_16
Towards a genome-wide mutant library of pseudomonas putida strain KT2440 10.1007/978-1-4020-6097-7_8
Control of expression of divergent pseudomonas putida put promoters for proline catabolism 10.1128/AEM.66.12.5221-5225.2000
Mechanisms of solvent tolerance in gram-negative bacteria 10.1146/annurev.micro.56.012302.161038
Limits in energy generation and biotechnology of primary and secondary products 10.1111/j.1751-7915.2008.00052.x
Crystal structure of TtgV in complex with its DNA operator reveals a general model for cooperative DNA binding of tetrameric gene regulators 10.1101/gad.603510
Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions 10.1016/S0038-0717(99)00156-X
Short and direct science: Environmental Microbiology Reports 10.1111/j.1758-2229.2009.00048.x
Biological degradation of 2,4,6-trinitrotoluene 10.1128/MMBR.65.3.335-352.2001
Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds 10.1128/JB.182.9.2363-2369.2000
Assessing bacterial diversity in the rhizosphere of Thymus zygis growing in the Sierra Nevada National Park (Spain) through culture-dependent and independent approaches 10.1371/journal.pone.0146558
Diversity at its best: Bacterial taxis 10.1111/j.1462-2920.2010.02383.x
Microbial responses to xenobiotic compounds. Identification of genes that allow Pseudomonas putida KT2440 to cope with 2,4,6-trinitrotoluene 10.1111/j.1751-7915.2009.00085.x
TtgV represses two different promoters by recognizing different sequences 10.1128/JB.01504-08
Complexity in efflux pump control: Cross-regulation by the paralogues TtgV and TtgT 10.1111/j.1365-2958.2007.06004.x
Integration of signals through Crc and PtsN in catabolite repression of Pseudomonas putida TOL plasmid pWW0 10.1128/AEM.71.8.4191-4198.2005
Global regulation of food supply by Pseudomonas putida DOT-T1E 10.1128/JB.01129-09
Urinary levels of arsenic and heavy metals in children and adolescents living in the industrialised area of Ria of Huelva (SW Spain) 10.1016/j.envint.2010.04.012
Plasmolysis induced by toluene in a cyoB mutant of Pseudomonas putida 10.1111/j.1462-2920.2004.00621.x
Levels and chemical composition of PM in a city near a large Cu-smelter in Spain 10.1039/c0em00708k
Analysis of the pathogenic potential of nosocomial Pseudomonas putida strains 10.3389/fmicb.2015.00871
Identification of the initial steps in D-lysine catabolism in Pseudomonas putida 10.1128/JB.01538-06
Different modes of binding of mono- and biaromatic effectors to the transcriptional regulator TTGV: Role in differential derepression from its cognate operator 10.1074/jbc.M610032200
Catabolite repression of the TodS/TodT two-component system and effector-dependent transphosphorylation of TodT as the basis for toluene dioxygenase catabolic pathway control 10.1128/JB.00379-10
Involvement of the global crp regulator in cyclic amp-dependent utilization of aromatic amino acids by pseudomonas putida 10.1128/JB.06353-11
Compartmentalized glucose metabolism in Pseudomonas putida is controlled by the PtxS repressor 10.1128/JB.00520-10
Comparison of omega wave system and polar S810i to detect R-R intervals at rest 10.1055/s-0030-1248319
Microbial Biotechnology from medicine to bacterial population dynamics 10.1111/j.1751-7915.2009.00110.x
PnrA, a new nitroreductase-family enzyme in the TNT-degrading strain Pseudomonas putida JLR11 10.1111/j.1462-2920.2005.00801.x
Residues 137 and 153 at the N terminus of the XylS protein influence the effector profile of this transcriptional regulator and the σ factor used by RNA polymerase to stimulate transcription from its cognate promoter 10.1074/jbc.M110226200
Degradation of o-methoxybenzoate by a two-member consortium made up of a gram-positive Arthrobacter strain and a gram-negative Pantotea strain 10.1023/A:1026541518663
BacTregulators: A database of transcriptional regulators in bacteria and archaea 10.1093/bioinformatics/bth330
Transoesophageal electronic bioimpedance device for the study of post-transplant heart rejection 10.1007/978-3-540-89208-3_281
The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment 10.1111/j.1462-2920.2011.02492.x
Molecular binding mechanism of TtgR repressor to antibiotics and antimicrobials 10.1371/journal.pone.0138469
A broad range of themes in Microbial Biotechnology 10.1111/j.1751-7915.2008.00076.x
Escherichia coli has multiple enzymes that attack TNT and release nitrogen for growth 10.1111/j.1462-2920.2007.01272.x
Signal-regulator interactions, genetic analysis of the effector binding site of xyls, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon 10.1016/0022-2836(90)90358-S
Mutations in genes involved in the flagellar export apparatus of the solvent-tolerant Pseudomonas putida DOT-T1E strain impair motility and lead to hypersensitivity to toluene shocks 10.1128/JB.183.14.4127-4133.2001
The cytotoxic activity of the phage E protein suppress the growth of murine B16 melanomas in vitro and in vivo 10.1007/s00109-009-0493-9
Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein 10.1046/j.1365-2958.2003.03615.x
Crystallization and crystallographic analysis of the ligand-binding domain of the Pseudomonas putida chemoreceptor McpS in complex with malate and succinate 10.1107/S1744309112004940
Antibiotic-dependent induction of Pseudomonas putida DOT-T1E TtgABC efflux pump is mediated by the drug binding repressor TtgR 10.1128/AAC.47.10.3067-3072.2003
Mechanisms for solvent tolerance in bacteria 10.1074/jbc.272.7.3887
Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation of transcription 10.1007/BF00281629
Toluene tolerance systems in pseudomonas 10.1007/978-4-431-54520-0_11
Analysis of the core genome and pangenome of Pseudomonas putida 10.1111/1462-2920.13015
Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation 10.1111/j.1758-2229.2009.00091.x
Metabolic engineering, new antibiotics and biofilm viscoelasticity 10.1111/j.1751-7915.2009.00157.x
New molecular tools for enhancing methane production, explaining thermodynamically limited lifestyles and other important biotechnological issues 10.1111/j.1751-7915.2009.00134.x
Regulation of glucose metabolism in Pseudomonas. The phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain 10.1074/jbc.M109.014555
Cold is cool, the human microbiota and taking multiple SIPs 10.1111/j.1751-7915.2011.00287.x
Analysis of the mRNA structure of the Pseudomonas putida TOL meta fission pathway operon around the transcription initiation point, the xylTE and the xylFJ regions 10.1016/0167-4781(93)90149-8
Compensatory role of the cis-trans-isomerase and cardiolipin synthase in the membrane fluidity of Pseudomonas putida DOT-T1E 10.1111/j.1462-2920.2007.01283.x
A Pseudomonas putida cardiolipin synthesis mutant exhibits increased sensitivity to drugs related to transport functionality 10.1111/j.1462-2920.2006.01236.x
Bacterial sensor kinases: Diversity in the recognition of environmental signals 10.1146/annurev.micro.112408.134054
Transcriptional Phase Variation at the flhB Gene of Pseudomonas putida DOT-T1E Is Involved in Response to Environmental Changes and Suggests the Participation of the Flagellar Export System in Solvent Tolerance 10.1128/JB.186.6.1905-1909.2004
Struggling to get a universal meningococcal vaccine and novel uses for bacterial toxins in cancer treatment 10.1111/j.1751-7915.2010.00195.x
Regulation of the cyclopropane synthase cfaB gene in Pseudomonas putida KT2440 10.1111/j.1574-6968.2011.02317.x
The Pseudomonas aeruginosa quinolone quorum sensing signal alters the multicellular behaviour of Pseudomonas putida KT2440 10.1016/j.resmic.2011.06.013
Chemical and microbiological characterization of atmospheric particulate matter during an intense african dust event in Southern Spain 10.1021/es3051235
Laboratory research aimed at closing the gaps in microbial bioremediation 10.1016/j.tibtech.2011.06.007
PhhR Binds to Target Sequences at Different Distances with Respect to RNA Polymerase in Order to Activate Transcription 10.1016/j.jmb.2009.09.045
Physiologically relevant divalent cations modulate citrate recognition by the McpS chemoreceptor 10.1002/jmr.1101
Bioremediation of polynitrated aromatic compounds: Plants and microbes put up a fight 10.1016/j.copbio.2005.03.010
Events in root colonization by pseudomonas putida 10.1007/978-94-017-9555-5_10
Carmen Michan
Michan Carmen / Carmen Michan-Doña
ORCID: 0000-0003-2921-0987
Gut microbiota: In sickness and in health 10.1111/1751-7915.12106
Indispensable or toxic? The phosphate versus arsenate debate 10.1111/1751-7915.12024
Salt and oxidative stress tolerance in Debaryomyces hansenii and Debaryomyces fabryi 10.1111/1567-1364.12020
Evolution of antibiotic resistance, catabolic pathways and niche colonization 10.1111/j.1751-7915.2012.00335.x
Explorative probes and biomarkers, chronic Salmonella infections and future vaccines 10.1111/j.1751-7915.2011.00315.x
Induction of Pseudomonas syringae pv. tomato DC3000 mexAB-oprM multidrug efflux pump by flavonoids is mediated by the repressor PmeR 10.1094/MPMI-03-11-0077
Cold is cool, the human microbiota and taking multiple SIPs 10.1111/j.1751-7915.2011.00287.x
Directed evolution, natural products for cancer chemotherapy, and micro-biosensing robots 10.1111/j.1751-7915.2011.00267.x
New molecular techniques for pathogen analysis, in silico determination of RND efflux pump substrate specificity, shotgun proteomic monitoring of bioremediation and yeast bio-applications 10.1111/j.1751-7915.2010.00225.x
Struggling to get a universal meningococcal vaccine and novel uses for bacterial toxins in cancer treatment 10.1111/j.1751-7915.2010.00195.x
Microbial biotechnology: Biofuels, genotoxicity reporters and robust agro-ecosystems 10.1111/j.1751-7915.2010.00177.x
Sugar (ribose), spice (peroxidase) and all things nice (laccase hair-dyes) 10.1111/j.1751-7915.2010.00167.x
Metabolic engineering, new antibiotics and biofilm viscoelasticity 10.1111/j.1751-7915.2009.00157.x
The heat, drugs and knockout systems of Microbial Biotechnology 10.1111/j.1751-7915.2009.00144.x
Growth phase-dependent variations in transcript profiles for thioredoxin- and glutathione-dependent redox systems followed by budding and hyphal Candida albicans cultures 10.1111/j.1567-1364.2009.00558.x
New molecular tools for enhancing methane production, explaining thermodynamically limited lifestyles and other important biotechnological issues 10.1111/j.1751-7915.2009.00134.x
Twenty one important things you should know 10.1111/j.1751-7915.2009.00128.x
Transcript copy number of genes for DNA repair and translesion synthesis in yeast: Contribution of transcription rate and mRNA stability to the steady-state level of each mRNA along with growth in glucose-fermentative medium 10.1016/j.dnarep.2004.12.001
Absolute transcript levels of thioredoxin- and glutathione-dependent redox systems in Saccharomyces cerevisiae: Response to stress and modulation with growth 10.1042/BJ20040851
SoxRS down-regulation of rob transcription 10.1128/JB.184.17.4733-4738.2002
Hydrogen peroxide activates the SoxRS regulon in vivo 10.1128/JB.182.23.6842-6844.2000
DNA binding and DNA bending by the MelR transcription activator protein from Escherichia coli 10.1093/nar/25.9.1685
XylS domain interactions can be deduced from intraallelic dominance in double mutants of Pseudomonas putida 10.1007/BF00279387
Signal-regulator interactions, genetic analysis of the effector binding site of xyls, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon 10.1016/0022-2836(90)90358-S
ITRAQ analysis of hepatic proteins in free-living Mus spretus mice to assess the contamination status of areas surrounding Doñana National Park (SW Spain) 10.1016/j.scitotenv.2015.03.116
The XylS/AraC family of regulators 10.1093/nar/21.4.807
The halotolerant Debaryomyces hansenii, the Cinderella of non-conventional yeasts 10.1002/yea.3177
Debaryomyces hansenii strains from Valle de los pedroches Iberian dry meat products: Isolation, identification, characterization, and selection for starter cultures 10.4014/jmb.1704.04045
Alterations in oxidative responses and post-translational modification caused by p,p´-DDE in Mus spretus testes reveal Cys oxidation status in proteins related to cell-redox homeostasis and male fertility 10.1016/j.scitotenv.2018.04.305
Paving the way for the production of secretory proteins by yeast cell factories 10.1111/1751-7915.13342
Trk1, the sole potassium-specific transporter in Candida glabrata, contributes to the proper functioning of various cell processes 10.1007/s11274-019-2698-6
Overlapping responses between salt and oxidative stress in Debaryomyces hansenii 10.1007/s11274-019-2753-3
Bacteria, archae, fungi and viruses: it takes a community to eliminate waste 10.1111/1751-7915.13503
High‐throughput molecular analyses of microbiomes as a tool to monitor the wellbeing of aquatic environments 10.1111/1751-7915.13763
The Potassium Transporter Hak1 in Candida Albicans, Regulation and Physiological Effects at Limiting Potassium and under Acidic Conditions 10.3390/jof7050362
Constructing a de novo transcriptome and a reference proteome for the bivalve Scrobicularia plana: Comparative analysis of different assembly strategies and proteomic analysis 10.1016/j.ygeno.2021.03.025
Influence of packing material on the biofiltration of butyric acid: A comparative study from a physico-chemical, olfactometric and microbiological perspective 10.1016/j.jenvman.2021.113044
Redox and global interconnected proteome changes in mice exposed to complex environmental hazards surrounding Doñana National Park 10.1016/j.envpol.2019.05.085
Regulation and activity of CaTrk1, CaAcu1 and CaHak1, the three plasma membrane potassium transporters in Candida albicans 10.1016/j.bbamem.2020.183486
Metal body burden and tissue oxidative status in the bivalve Venerupis decussata from Tunisian coastal lagoons 10.1016/j.marenvres.2020.105000
Biofiltration of butyric acid: Monitoring odor abatement and microbial communities 10.1016/j.envres.2020.110057
Meta‐omic evaluation of bacterial microbial community structure and activity for the environmental assessment of soils: overcoming protein extraction pitfalls 10.1111/1462-2920.15673
Summary of the Sussex-Huawei locomotion-transportation recognition challenge
Observation of a manifold in the chaotic phase space of an asymmetric optical microcavity
Localized temporal variation of Earth's inner-core boundary from high-quality waveform doublets
Off-axis multi-wavelength dispersion controlling metalens for multi-color imaging
Impact of United States political sanctions on international collaborations and research in Iran