Genetic barcoding of dark-spored myxomycetes (Amoebozoa)
Mathilde Borg Dahl
Asker Brejnrod
Martin Unterseher
Thomas Hoppe
Yun Feng
Yuri Novozhilov
Søren Johannes Sørensen
Martin Schnittler
Asker Brejnrod
Brejnrod Asker
ORCID: 0000-0002-1327-2051
The developing hypopharyngeal microbiota in early life
10.1186/s40168-016-0215-9
A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation
10.1002/mnfr.201600528
Coping with copper
10.1093/femsec/fiw175
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
10.1186/s40168-016-0208-8
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
10.1111/jam.12584
Soil bacteria show different tolerance ranges to an unprecedented disturbance
10.1007/s00374-017-1255-4
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
10.1128/AEM.02755-17
Eosinophilic airway inflammation in asthmatic patients is associated with an altered airway microbiome
10.1016/j.jaci.2016.10.046
Deciphering conjugative plasmid permissiveness in wastewater microbiomes
10.1111/mec.14138
Maturation of the gut microbiome and risk of asthma in childhood
10.1038/s41467-017-02573-2
Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
10.1038/s41598-017-16007-y
Local diversity of heathland Cercozoa explored by in-depth sequencing
10.1038/ismej.2016.31
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
10.1016/j.fm.2015.04.008
Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora
10.1128/genomeA.00026-17
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance
10.1111/1574-6941.12403
Genetic barcoding of dark-spored myxomycetes (Amoebozoa)
10.1111/1755-0998.12725
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
10.1371/journal.pone.0187858
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium
10.1038/ismej.2015.14
Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
10.3389/fmicb.2017.01832
In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment
10.1128/AEM.01450-18
Papio spp. Colon microbiome and its link to obesity in pregnancy
10.1111/jmp.12366
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children
10.1016/j.ebiom.2018.11.035
Stability and resilience of the intestinal microbiota in children in daycare - a 12 month cohort study
10.1186/s12866-018-1367-5
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
10.1186/s40168-018-0606-1
The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome
10.1002/mnfr.201700976
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
10.1016/j.ijfoodmicro.2019.02.003
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites
10.1016/j.envint.2019.02.048
Variations in microbiome composition of sewer biofilms due to ferrous and ferric iron dosing
10.1080/23311843.2019.1595293
Treatment of Active Crohn's Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition
10.1053/j.gastro.2018.12.002
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
10.1007/s00248-019-01347-1
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
10.1038/s41467-019-12989-7
The human milk microbiota is modulated by maternal diet
10.3390/microorganisms7110502
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
10.1038/s41396-019-0494-9
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial
10.1038/s41467-020-14308-x
Implementations of the chemical structural and compositional similarity metric in R and Python
10.1101/546150
Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age
10.3390/nu12041081
Ecological succession in the vaginal microbiota during pregnancy and birth
10.1038/s41396-020-0686-3
Modeling transfer of vaginal microbiota from mother to infant in early life
10.7554/eLife.57051
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
10.1101/2021.01.26.428250
Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment
10.1101/2021.06.04.446988
Søren Sørensen
Sørensen Søren
/ Søren Johannes Sørensen
ORCID: 0000-0001-6227-9906
Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer
10.1371/journal.pone.0162390
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients
10.1016/j.jgar.2016.03.001
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies
10.1093/femsec/fiw087
Metagenomes provide valuable comparative information on soil microeukaryotes
10.1016/j.resmic.2016.03.003
High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples
10.1017/S2040174415001506
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases
10.1111/1751-7915.12343
Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark
10.1128/genomeA.00076-16
Genome sequence of Kocuria palustris strain W4
10.1128/genomeA.00074-16
Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse
10.1128/genomeA.00073-16
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods
10.1093/femsec/fiv157
Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark
10.1128/genomeA.00075-16
Draft genome assembly of two Pseudoclavibacter helvolus strains, G8 and W3, isolated from slaughterhouse environments
10.1128/genomeA.00077-16
Diverse gene functions in a soil mobilome
10.1016/j.soilbio.2016.07.018
Coping with copper
10.1093/femsec/fiw175
Coexistence facilitates interspecific biofilm formation in complex microbial communities
10.1111/1462-2920.13335
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment
10.1007/s00248-015-0692-6
Back to the future of soil metagenomics
10.3389/fmicb.2016.00073
Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission
10.1111/1462-2920.12827
Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming
10.1016/j.soilbio.2015.06.027
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law
10.1002/biot.201400537
Natural hot spots for gain of multiple resistances
10.1128/AEM.03240-14
Microbial diversity in a permanently cold and alkaline environment in Greenland
10.1371/journal.pone.0124863
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques
10.1016/j.ijfoodmicro.2015.09.012
Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere
10.1007/s00374-015-1045-9
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
10.1016/j.fm.2015.04.008
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment
10.1111/1462-2920.12539
Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1
10.1021/acs.est.5b02309
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation
10.1038/ismej.2014.96
Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models
10.1128/AEM.02628-15
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments
10.1128/genomeA.00585-15
Current strategies for mobilome research
10.3389/fmicb.2014.00750
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
10.1038/ismej.2014.191
Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts
10.1111/mec.13216
Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential
10.1128/AEM.00961-15
The microbiome of New World vultures
10.1038/ncomms6498
The giraffe (Giraffa camelopardalis) rumen microbiome
10.1111/1574-6941.12402
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids
10.1111/1574-6941.12397
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year
10.1128/AEM.04016-13
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal
10.1111/1751-7915.12079
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
10.1016/j.ijfoodmicro.2014.01.019
Rapid TaqMan-based quantification of Chlorophyll d-containing Cyanobacteria in the Genus Acaryochloris
10.1128/AEM.00334-14
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
10.1111/jam.12584
Metabolic variability in bioprocessing
10.1016/j.tibtech.2014.10.002
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
10.1111/1574-6941.12189
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
10.1111/1462-2920.12353
Identifying the core microbial community in the gut of fungus-growing termites
10.1111/mec.12874
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
10.1038/nbt.2939
Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
10.1371/journal.pone.0087924
Host-specific microbial communities in three sympatric North Sea sponges
10.1111/1574-6941.12400
High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions
10.1007/s00248-013-0315-z
Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures
10.1128/genomeA.00484-14
Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter
10.1128/genomeA.00485-14
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance
10.1111/1574-6941.12403
Draft genome sequence of Burkholderia sordidicola S170, a potential plant growth promoter isolated from coniferous forest soil in the Czech Republic
10.1128/genomeA.00810-14
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque
10.1016/j.jviromet.2013.10.040
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species
10.1128/genomeA.00265-14
Characterization of the gut microbiota in leptin deficient obese mice
10.1016/j.rvsc.2014.01.007
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
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An improved method for including upper size range plasmids in metamobilomes
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The murine lung microbiome in relation to the intestinal and vaginal bacterial communities
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The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host
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The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains
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Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis
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Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes
10.1016/j.mimet.2013.09.016
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations
10.1007/s00248-012-0112-0
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny
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Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques
10.1007/s00284-013-0382-x
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing
10.1016/j.soilbio.2011.12.023
Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
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Cell mass and cell cycle dynamics of an asynchronous budding yeast population
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Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation
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Bacterial chitinolytic communities respond to chitin and pH alteration in soil
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Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments
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A spatiotemporal view of plasmid loss in biofilms and planktonic cultures
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A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors
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454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters
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The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors
10.1016/j.ijfoodmicro.2011.05.012
The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR
10.1016/j.ijfoodmicro.2011.11.014
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae
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Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure
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Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
10.1016/j.jbiotec.2012.01.020
Physiological heterogeneities in microbial populations and implications for physical stress tolerance
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Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics
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Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella
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Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing
10.1111/j.1469-0691.2012.03862.x
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential
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Heterogeneity in recombinant protein production
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Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse
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Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse
10.1007/s00125-012-2564-7
Draft Genome Sequence of the Soil Bacterium Burkholderia terrae Strain BS001, Which Interacts with Fungal Surface Structures
10.1128/JB.00725-12
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
10.1128/JCM.01237-12
Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina
10.1128/AEM.00397-12
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing
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454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
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Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil
10.1016/j.soilbio.2011.06.019
Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools
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Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0
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Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic
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Quantitative metagenomic analyses based on average genome size normalization
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Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07
10.1111/j.1574-6941.2010.01024.x
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
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Investigation of diversity of plasmids carrying the blaTEM-52 gene
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Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect
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Experimental methods and modeling techniques for description of cell population heterogeneity
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Endolithic chlorophyll d-containing phototrophs
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Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing
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Biofilms in soil
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An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria
10.1016/j.mimet.2009.08.006
Persistence Mechanisms of Conjugative Plasmids
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Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains
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All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant
10.1016/j.plasmid.2009.05.004
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains
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Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
10.1016/j.plasmid.2008.03.003
Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences
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Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment
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Acclimation of subsurface microbial communities to mercury
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The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups
10.1016/j.plasmid.2006.11.007
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria
10.1016/j.ympev.2006.11.013
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations
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Establishment and early succession of a multispecies biofilm composed of soil bacteria
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Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat
10.1128/AEM.01971-06.
Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp.
10.1016/j.envpol.2005.11.047
Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil
10.1111/j.1462-2920.2005.00935.x
Making bio-sense of toxicity: new developments in whole-cell biosencors
10.1016/j.copbio.2005.12.007
Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms
10.1128/AEM.03022-05
Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site
10.1021/es060008u
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments
10.1016/j.mrgentox.2005.11.008
Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition
10.1007/s00248-004-0113-8
The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs
10.1089/mdr.2005.11.378
Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene
10.1016/j.femsle.2005.09.034
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters
10.1128/AEM.71.5.2338-2346.2005
The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)
10.1016/S0038-0717(03)00214-1
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor
10.1016/S0378-1135(02)00029-9
The Effect of Long Term Mercury Pollution on the Soil Microbial Community
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An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities
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Application of a mer-lux biosensor for estimating bioavailable mercury in soil
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A new method for determining the metabolic activity of specific bacterial populations in soil using tritiated leucine and immunomagnetic separation
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Antagonism correlates with metabolic similarity in diverse bacteria
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Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities
10.1128/AEM.02755-17
Fluorescence Recovery Allows the Implementation of a Fluorescence Reporter Gene Platform Applicable for the Detection and Quantification of Horizontal Gene Transfer in Anoxic Environments
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Deep mutational scanning by FACS-sorting of encapsulated E. coli micro-colonies
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Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
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An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer
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Enhanced bacterial mutualism through an evolved biofilm phenotype
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Impact of long-term agricultural management practices on soil prokaryotic communities
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Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli
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It is elemental: soil nutrient stoichiometry drives bacterial diversity
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Direct detection and quantification of horizontal gene transfer by using flow cytometry and gfp as a reporter gene
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A spatiotemporal view of plasmid loss in biofilms and planktonic cultures
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High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA)
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Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium
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The cda GenoTox assay: A new and sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines
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Conjugative plasmids: Vessels of the communal gene pool
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Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation
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Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome
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Microbiomes associated with infective stages of root-knot and lesion nematodes in soil
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Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil
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Stability and resilience of the intestinal microbiota in children in daycare - A 12 month cohort study
10.1186/s12866-018-1367-5
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
10.1016/j.ijfoodmicro.2018.02.012
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
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Detection and quantification of tetracyclines by whole cell biosensors
10.1016/S0378-1097(00)00347-5
Metagenomic analysis of dairy bacteriophages: Extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
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Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
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Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere
10.1016/S0168-6496(99)00079-3
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities
10.1016/j.mimet.2018.07.009
Effects of tylosin as a disturbance on the soil microbial community
10.1016/S0038-0717(01)00134-1
Recovery of GFP-labeled bacteria for culturing and molecular analysis after cell sorting using a benchtop flow cytometer
10.1007/s00248-003-1069-9
Adaptation of the bacterial community to mercury contamination
10.1016/S0378-1097(01)00376-7
Detection of oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry
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