Mining for novel antibiotics in the age of antimicrobial resistance
Zulema Udaondo
Miguel A. Matilla
Microbial biotechnology, 2020-9-2
Miguel A. Matilla
Matilla Miguel A.
ORCID: 0000-0002-8468-9604
The broad-spectrum antibiotic, zeamine, kills the nematode worm Caenorhabditis elegans
10.3389/fmicb.2015.00137
Bacteriophage ϕMAM1, a viunalikevirus, is a broad-host-range, high-efficiency generalized transducer that infects environmental and clinical isolates of the enterobacterial genera Serratia and Kluyvera
10.1128/AEM.01546-14
Viunalikeviruses are environmentally common agents of horizontal gene transfer in pathogens and biocontrol bacteria
10.1038/ismej.2014.150
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1
10.1111/1462-2920.12037
Metabolic potential of the organic-solvent tolerant Pseudomonas putidaDOT-T1E deduced from its annotated genome
10.1111/1751-7915.12061
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants
10.1016/j.febslet.2012.07.031
Bacterial Biosynthetic Gene Clusters Encoding the Anti-cancer Haterumalide Class of Molecules BIOGENESIS OF THE BROAD SPECTRUM ANTIFUNGAL AND ANTI-OOMYCETE COMPOUND, OOCYDIN A
10.1074/jbc.M112.401026
Complete genome sequence of Serratia plymuthica bacteriophage ΦMAM1
10.1128/JVI.02702-12
Bacterial chemotaxis towards aromatic hydrocarbons in Pseudomonas
10.1111/j.1462-2920.2011.02493.x
Complete Genome of the Plant Growth-Promoting Rhizobacterium Pseudomonas putida BIRD-1
10.1128/JB.01281-10
Cyclic diguanylate turnover mediated by the sole GGDEF/EAL response regulator in Pseudomonas putida: its role in the rhizosphere and an analysis of its target processes
10.1111/j.1462-2920.2011.02499.x
The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment
10.1111/j.1462-2920.2011.02492.x
Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation
10.1111/j.1758-2229.2009.00091.x
Involvement of ethylene in seed physiology
10.1016/j.plantsci.2008.01.014
Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere
10.1186/gb-2007-8-9-r179
Temperature and pyoverdine-mediated iron acquisition control surface motility of Pseudomonas putida
10.1111/j.1462-2920.2007.01286.x
Genetic dissection of the regulatory network associated with high c-di-GMP levels in Pseudomonas putida KT2440
10.3389/fmicb.2016.01093
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.
10.1128/genomea.00373-16
Biosynthesis of the acetyl-coA carboxylase-inhibiting antibiotic, andrimid in Serratia is regulated by hfq and the LysR-type transcriptional regulator, admX
10.1111/1462-2920.13241
A plasmid-transposon hybrid mutagenesis system effective in a broad range of enterobacteria
10.3389/fmicb.2015.01442
Assessment of the contribution of chemoreceptor-based signalling to biofilm formation
10.1111/1462-2920.13170
Identification of ligands for bacterial sensor proteins
10.1007/s00294-015-0528-4
McpQ is a specific citrate chemoreceptor that responds preferentially to citrate/metal ion complexes
10.1111/1462-2920.13030
Identification of a Chemoreceptor for C2 and C3 Carboxylic Acids.
10.1128/aem.01529-15
Biosynthesis of the antifungal haterumalide, oocydin A, in Serratia, and its regulation by quorum sensing, RpoS and Hfq
10.1111/1462-2920.12839
A technology for the investigation of biofilm transmission under shearing pressures
10.1111/1751-7915.12848
Metabolic value chemoattractants are preferentially recognized at broad ligand range chemoreceptor of Pseudomonas putida KT2440
10.3389/fmicb.2017.00990
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.
10.1128/genomea.01752-16
Chemoreceptor-based signal sensing
10.1016/j.copbio.2016.11.021
The effect of bacterial chemotaxis on host infection and pathogenicity
10.1093/femsre/fux052
Novel pressure sensors and bioreporters in the synthetic biology era
10.1111/1462-2920.14019
The activity of the C4-dicarboxylic acid chemoreceptor of Pseudomonas aeruginosa is controlled by chemoattractants and antagonists
10.1038/s41598-018-20283-7
High-throughput screening to identify chemoreceptor ligands
10.1007/978-1-4939-7577-8_23
Shedding light into the mechanisms of formation and resuscitation of persistent bacterial cells
10.1111/1462-2920.14334
Structural Basis for Polyamine Binding at the dCACHE Domain of the McpU Chemoreceptor from Pseudomonas putida
10.1016/j.jmb.2018.05.008
Functional Annotation of Bacterial Signal Transduction Systems: Progress and Challenges
10.3390/ijms19123755
High-affinity chemotaxis to histamine mediated by the TlpQ chemoreceptor of the human pathogen pseudomonas aeruginosa
10.1128/mBio.01894-18
An auxin controls bacterial antibiotics production
10.1093/nar/gky766
Training bacteria to produce environmentally friendly polymers of industrial and medical relevance
10.1111/1751-7915.13470
The involvement of McpB chemoreceptor from Pseudomonas aeruginosa PAO1 in virulence
10.1038/s41598-019-49697-7
The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN
10.1128/mbio.02334-18
Chemoperception of Specific Amino Acids Controls Phytopathogenicity in Pseudomonas syringae pv. tomato
10.1128/mbio.01868-19
Concentration Dependent Effect of Plant Root Exudates on the Chemosensory Systems of Pseudomonas putida KT2440
10.3389/fmicb.2019.00078
Chemical fertilization: a short‐term solution for plant productivity?
10.1111/1751-7915.13515
Metabolic Responses of Plants Upon Different Plant-Pathogen Interactions
10.1016/B978-0-12-812689-9.00010-8
Ethylene: Role in plants under environmental stress
10.1007/978-1-4614-8600-8_7
Using Genomics to Unveil Bacterial Determinants of Rhizosphere Life Style
10.1002/9781118297674.ch2
Determination of ligand profiles for pseudomonas aeruginosa solute binding proteins
10.3390/ijms20205156
Genome sequence of the oocydin a-producing rhizobacterium serratia plymuthica 4Rx5
10.1128/MRA.00997-18
How bacterial chemoreceptors evolve novel ligand specificities
10.1128/mBio.03066-19
Identification of a chemoreceptor in Pseudomonas aeruginosa that specifically mediates chemotaxis toward α-ketoglutarate
10.3389/fmicb.2016.01937
The use of isothermal titration calorimetry to unravel chemotactic signalling mechanisms
10.1111/1462-2920.15035
Mining for novel antibiotics in the age of antimicrobial resistance
10.1111/1751-7915.13662
The structural basis for signal promiscuity in a bacterial chemoreceptor
10.1111/febs.15580
Evidence for Pentapeptide-Dependent and Independent CheB Methylesterases
10.3390/ijms21228459
Pseudomonas aeruginosa as a Model To Study Chemosensory Pathway Signaling
10.1128/MMBR.00151-20
Amino acid sensor conserved from bacteria to humans
10.1101/2021.05.05.442820
Histamine: A Bacterial Signal Molecule
10.3390/ijms22126312
Facing crises in the 21st century: microfluidics approaches for antibiotic discovery
10.1111/1751-7915.13908
Zulema Udaondo
Udaondo Zulema
ORCID: 0000-0003-3445-6842
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli.
10.1111/1758-2229.12553
The pangenome of the genus Clostridium.
10.1111/1462-2920.13732
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.
10.1128/genomea.01752-16
Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.
10.3389/fmicb.2016.02100
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.
10.1111/1462-2920.13585
Pseudomonas putida as a platform for the synthesis of aromatic compounds.
10.1099/mic.0.000333
Specific Gene Loci of Clinical Pseudomonas putida Isolates.
10.1371/journal.pone.0147478
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.
10.1128/genomea.00373-16
First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid.
10.1111/1751-7915.12333
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium.
10.1128/genomea.00904-15
Analysis of the core genome and pangenome of Pseudomonas putida.
10.1111/1462-2920.13015
Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.
10.1016/j.syapm.2015.07.002
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics.
10.1111/1751-7915.12295
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida.
10.1093/femsre/fuv006
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.
10.1111/1462-2920.12775
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J.
10.1111/1758-2229.12245
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440.
10.1111/1758-2229.12167
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital.
10.1371/journal.pone.0081604
Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234.
10.1128/genomea.00496-13
Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.
10.1111/1751-7915.12061
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1.
10.1111/1462-2920.12037
Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS.
10.1371/journal.pone.0039390
Evolution of antibiotic resistance, catabolic pathways and niche colonization.
10.1111/j.1751-7915.2012.00335.x
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants.
10.1016/j.febslet.2012.07.031
Mining for novel antibiotics in the age of antimicrobial resistance.
10.1111/1751-7915.13662
Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries.
10.1111/1462-2920.15138
Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing.
10.1093/ofid/ofaa180
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide.
10.3389/fmicb.2020.00202
Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia.
10.1128/mra.01380-19
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.
10.1016/j.meegid.2019.103965
Microbiomes as the new keystone for life sciences development.
10.1111/1751-7915.13424
Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.
10.1128/mra.00222-19
Towards a better metabolic engineering reference: the microbial chassis.
10.1111/1751-7915.13363
Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5.
10.1128/mra.00997-18
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production.
10.1111/1751-7915.13269
Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators.
10.1111/1751-7915.13263
Fighting the enemy: one health approach against microbial resistance
10.1111/1751-7915.13587
Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure
10.3390/metabo11080540
Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon
10.3390/life11080862
