Understanding butanol tolerance and assimilation in Pseudomonas putidaBIRD-1: An integrated omics approach
Cuenca, M.D.S. Roca, A. Molina-Santiago, C. Duque, E. Armengaud, J. Gómez-Garcia, M.R. Ramos, J.L.
Microbial Biotechnology, 2016-1
https://doi.org/10.1111/1751-7915.12328
Amalia Roca
Roca Amalia
ORCID: 0000-0003-2332-3112
Events in root colonization by pseudomonas putida 10.1007/978-94-017-9555-5_10
Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1 10.1128/JB.01281-10
Redundancy of enzymes for formaldehyde detoxification in Pseudomonas putida 10.1128/JB.00076-09
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Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil 10.1111/j.1751-7915.2012.00358.x
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Corrigendum: In vivo role of FdhD and FdmE in formate metabolism in Pseudomonas putida: Redundancy and expression in the stationary phase 10.1111/j.1758-2229.2009.00062.x
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Metabolic potential of the organic-solvent tolerant Pseudomonas putidaDOT-T1E deduced from its annotated genome 10.1111/1751-7915.12061
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Physiological responses of Pseudomonas putida to formaldehyde during detoxification 10.1111/j.1751-7915.2007.00014.x
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In vivo role of FdhD and FdmE in formate metabolism in Pseudomonas putida: Redundancy and expression in the stationary phase 10.1111/j.1758-2229.2009.00032.x
Indigenous Pseudomonas spp. Strains from the Olive (Olea europaea L.) rhizosphere as effective biocontrol agents against Verticillium dahliae: From the host roots to the bacterial genomes 10.3389/fmicb.2018.00277
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Bacillales members from the olive rhizosphere are effective biological control agents against the defoliating pathotype of verticillium dahliae 10.3390/agriculture8070090
Understanding butanol tolerance and assimilation in Pseudomonas putidaBIRD-1: An integrated omics approach 10.1111/1751-7915.12328
Restoration of a Mediterranean forest after a fire: Bioremediation and rhizoremediation field-scale trial 10.1111/1751-7915.12138
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Histamine: A Bacterial Signal Molecule 10.3390/ijms22126312
Juan L. Ramos
Ramos Juan L.
ORCID: 0000-0002-8731-7435
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Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil 10.1111/j.1751-7915.2012.00358.x
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First- and second-generation biochemicals from sugars: Biosynthesis of itaconic acid 10.1111/1751-7915.12333
Photosynthetic production of ammonia 10.1007/BF01944528
Bioremediation of 2,4,6-trinitrotoluene under field conditions 10.1021/es062165z
Cloning, structure and expression of a pea cDNA clone coding for a photosynthetic fructose-1,6-bisphosphatase with some features different from those of the leaf chloroplast enzyme 10.1007/BF02411553
Plant-bacteria interactions in the removal of pollutants 10.1016/j.copbio.2012.09.011
Identification of reciprocal adhesion genes in pathogenic and non-pathogenic Pseudomonas 10.1111/j.1462-2920.2012.02732.x
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida 10.1093/femsre/fuv006
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants 10.1016/j.febslet.2012.07.031
Fate of Pseudomonas putida after release into lake water mesocosms: Different survival mechanisms in response to environmental conditions 10.1007/BF00165812
Field trial on removal of petroleum-hydrocarbon pollutants using a microbial consortium for bioremediation and rhizoremediation 10.1111/1758-2229.12174
Dual System to Reinforce Biological Containment of Recombinant Bacteria Designed for Rhizoremediation 10.1128/AEM.67.6.2649-2656.2001
Interspecies signalling: Pseudomonas putida efflux pump TtgGHI is activated by indole to increase antibiotic resistance 10.1111/1462-2920.12368
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Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for Pseudomonas putida KT2440 via the NAH7 catabolic plasmid 10.1128/AEM.00619-12
Bacterial responses and interactions with plants during rhizoremediation 10.1111/j.1751-7915.2009.00113.x
In situ X-ray data collection from highly sensitive crystals of Pseudomonas putida PtxS in complex with DNA 10.1107/S1744309112028540
Critical nucleotides in the upstream region of the XylS-dependent TOL meta-cleavage pathway operon promoter as deduced from analysis of mutants 10.1074/jbc.274.4.2286
Transcriptional organization of the Pseudomonas putida tol-oprL genes 10.1128/JB.185.1.184-195.2003
Study of the TmoS/TmoT two-component system: Towards the functional characterization of the family of TodS/TodT like systems 10.1111/j.1751-7915.2011.00322.x
Biomonitoring of urinary metals in a population living in the vicinity of industrial sources: A comparison with the general population of Andalusia, Spain 10.1016/j.scitotenv.2008.08.041
Understanding butanol tolerance and assimilation in Pseudomonas putidaBIRD-1: An integrated omics approach 10.1111/1751-7915.12328
Solvent tolerance in Gram-negative bacteria 10.1016/j.copbio.2011.11.015
Mutational analysis of the highly conserved C-terminal residues of the XylS protein, a member of the AraC family of transcriptional regulators 10.1016/S0014-5793(00)01749-X
Redundancy of enzymes for formaldehyde detoxification in Pseudomonas putida 10.1128/JB.00076-09
Transcriptional control of the main aromatic hydrocarbon efflux pump in Pseudomonas 10.1111/j.1758-2229.2011.00255.x
RNA polymerase holoenzymes can share a single transcription start site for the Pm promoter: Critical nucleotides in the -7 to -18 region are needed to select between RNA polymerase with σ38 or σ32 10.1074/jbc.M505415200
Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01 10.1046/j.1462-2920.2002.00371.x
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440 10.1111/1758-2229.12167
Inhibition of growth and induction of apoptosis in human breast cancer by transfection of gef gene 10.1038/sj.bjc.6601064
Pseudomonas putida mutants in the exbBexbDtonB gene cluster are hypersensitive to environmental and chemical stressors 10.1111/j.1462-2920.2004.00595.x
Cyclic diguanylate turnover mediated by the sole GGDEF/EAL response regulator in Pseudomonas putida: Its role in the rhizosphere and an analysis of its target processes 10.1111/j.1462-2920.2011.02499.x
16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains 10.1111/j.1462-5822.2005.00820.x
Characterization of molecular interactions using isothermal titration calorimetry 10.1007/978-1-4939-0473-0_16
Towards a genome-wide mutant library of pseudomonas putida strain KT2440 10.1007/978-1-4020-6097-7_8
Control of expression of divergent pseudomonas putida put promoters for proline catabolism 10.1128/AEM.66.12.5221-5225.2000
Mechanisms of solvent tolerance in gram-negative bacteria 10.1146/annurev.micro.56.012302.161038
Limits in energy generation and biotechnology of primary and secondary products 10.1111/j.1751-7915.2008.00052.x
Crystal structure of TtgV in complex with its DNA operator reveals a general model for cooperative DNA binding of tetrameric gene regulators 10.1101/gad.603510
Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions 10.1016/S0038-0717(99)00156-X
Short and direct science: Environmental Microbiology Reports 10.1111/j.1758-2229.2009.00048.x
Biological degradation of 2,4,6-trinitrotoluene 10.1128/MMBR.65.3.335-352.2001
Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds 10.1128/JB.182.9.2363-2369.2000
Assessing bacterial diversity in the rhizosphere of Thymus zygis growing in the Sierra Nevada National Park (Spain) through culture-dependent and independent approaches 10.1371/journal.pone.0146558
Diversity at its best: Bacterial taxis 10.1111/j.1462-2920.2010.02383.x
Microbial responses to xenobiotic compounds. Identification of genes that allow Pseudomonas putida KT2440 to cope with 2,4,6-trinitrotoluene 10.1111/j.1751-7915.2009.00085.x
TtgV represses two different promoters by recognizing different sequences 10.1128/JB.01504-08
Complexity in efflux pump control: Cross-regulation by the paralogues TtgV and TtgT 10.1111/j.1365-2958.2007.06004.x
Integration of signals through Crc and PtsN in catabolite repression of Pseudomonas putida TOL plasmid pWW0 10.1128/AEM.71.8.4191-4198.2005
Global regulation of food supply by Pseudomonas putida DOT-T1E 10.1128/JB.01129-09
Urinary levels of arsenic and heavy metals in children and adolescents living in the industrialised area of Ria of Huelva (SW Spain) 10.1016/j.envint.2010.04.012
Plasmolysis induced by toluene in a cyoB mutant of Pseudomonas putida 10.1111/j.1462-2920.2004.00621.x
Levels and chemical composition of PM in a city near a large Cu-smelter in Spain 10.1039/c0em00708k
Analysis of the pathogenic potential of nosocomial Pseudomonas putida strains 10.3389/fmicb.2015.00871
Identification of the initial steps in D-lysine catabolism in Pseudomonas putida 10.1128/JB.01538-06
Different modes of binding of mono- and biaromatic effectors to the transcriptional regulator TTGV: Role in differential derepression from its cognate operator 10.1074/jbc.M610032200
Catabolite repression of the TodS/TodT two-component system and effector-dependent transphosphorylation of TodT as the basis for toluene dioxygenase catabolic pathway control 10.1128/JB.00379-10
Involvement of the global crp regulator in cyclic amp-dependent utilization of aromatic amino acids by pseudomonas putida 10.1128/JB.06353-11
Compartmentalized glucose metabolism in Pseudomonas putida is controlled by the PtxS repressor 10.1128/JB.00520-10
Comparison of omega wave system and polar S810i to detect R-R intervals at rest 10.1055/s-0030-1248319
Microbial Biotechnology from medicine to bacterial population dynamics 10.1111/j.1751-7915.2009.00110.x
PnrA, a new nitroreductase-family enzyme in the TNT-degrading strain Pseudomonas putida JLR11 10.1111/j.1462-2920.2005.00801.x
Residues 137 and 153 at the N terminus of the XylS protein influence the effector profile of this transcriptional regulator and the σ factor used by RNA polymerase to stimulate transcription from its cognate promoter 10.1074/jbc.M110226200
Degradation of o-methoxybenzoate by a two-member consortium made up of a gram-positive Arthrobacter strain and a gram-negative Pantotea strain 10.1023/A:1026541518663
BacTregulators: A database of transcriptional regulators in bacteria and archaea 10.1093/bioinformatics/bth330
Transoesophageal electronic bioimpedance device for the study of post-transplant heart rejection 10.1007/978-3-540-89208-3_281
The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment 10.1111/j.1462-2920.2011.02492.x
Molecular binding mechanism of TtgR repressor to antibiotics and antimicrobials 10.1371/journal.pone.0138469
A broad range of themes in Microbial Biotechnology 10.1111/j.1751-7915.2008.00076.x
Escherichia coli has multiple enzymes that attack TNT and release nitrogen for growth 10.1111/j.1462-2920.2007.01272.x
Signal-regulator interactions, genetic analysis of the effector binding site of xyls, the benzoate-activated positive regulator of Pseudomonas TOL plasmid meta-cleavage pathway operon 10.1016/0022-2836(90)90358-S
Mutations in genes involved in the flagellar export apparatus of the solvent-tolerant Pseudomonas putida DOT-T1E strain impair motility and lead to hypersensitivity to toluene shocks 10.1128/JB.183.14.4127-4133.2001
The cytotoxic activity of the phage E protein suppress the growth of murine B16 melanomas in vitro and in vivo 10.1007/s00109-009-0493-9
Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein 10.1046/j.1365-2958.2003.03615.x
Crystallization and crystallographic analysis of the ligand-binding domain of the Pseudomonas putida chemoreceptor McpS in complex with malate and succinate 10.1107/S1744309112004940
Antibiotic-dependent induction of Pseudomonas putida DOT-T1E TtgABC efflux pump is mediated by the drug binding repressor TtgR 10.1128/AAC.47.10.3067-3072.2003
Mechanisms for solvent tolerance in bacteria 10.1074/jbc.272.7.3887
Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation of transcription 10.1007/BF00281629
Toluene tolerance systems in pseudomonas 10.1007/978-4-431-54520-0_11
Analysis of the core genome and pangenome of Pseudomonas putida 10.1111/1462-2920.13015
Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation 10.1111/j.1758-2229.2009.00091.x
Metabolic engineering, new antibiotics and biofilm viscoelasticity 10.1111/j.1751-7915.2009.00157.x
New molecular tools for enhancing methane production, explaining thermodynamically limited lifestyles and other important biotechnological issues 10.1111/j.1751-7915.2009.00134.x
Regulation of glucose metabolism in Pseudomonas. The phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain 10.1074/jbc.M109.014555
Cold is cool, the human microbiota and taking multiple SIPs 10.1111/j.1751-7915.2011.00287.x
Analysis of the mRNA structure of the Pseudomonas putida TOL meta fission pathway operon around the transcription initiation point, the xylTE and the xylFJ regions 10.1016/0167-4781(93)90149-8
Compensatory role of the cis-trans-isomerase and cardiolipin synthase in the membrane fluidity of Pseudomonas putida DOT-T1E 10.1111/j.1462-2920.2007.01283.x
A Pseudomonas putida cardiolipin synthesis mutant exhibits increased sensitivity to drugs related to transport functionality 10.1111/j.1462-2920.2006.01236.x
Bacterial sensor kinases: Diversity in the recognition of environmental signals 10.1146/annurev.micro.112408.134054
Transcriptional Phase Variation at the flhB Gene of Pseudomonas putida DOT-T1E Is Involved in Response to Environmental Changes and Suggests the Participation of the Flagellar Export System in Solvent Tolerance 10.1128/JB.186.6.1905-1909.2004
Struggling to get a universal meningococcal vaccine and novel uses for bacterial toxins in cancer treatment 10.1111/j.1751-7915.2010.00195.x
Regulation of the cyclopropane synthase cfaB gene in Pseudomonas putida KT2440 10.1111/j.1574-6968.2011.02317.x
The Pseudomonas aeruginosa quinolone quorum sensing signal alters the multicellular behaviour of Pseudomonas putida KT2440 10.1016/j.resmic.2011.06.013
Chemical and microbiological characterization of atmospheric particulate matter during an intense african dust event in Southern Spain 10.1021/es3051235
Laboratory research aimed at closing the gaps in microbial bioremediation 10.1016/j.tibtech.2011.06.007
PhhR Binds to Target Sequences at Different Distances with Respect to RNA Polymerase in Order to Activate Transcription 10.1016/j.jmb.2009.09.045
Physiologically relevant divalent cations modulate citrate recognition by the McpS chemoreceptor 10.1002/jmr.1101
Bioremediation of polynitrated aromatic compounds: Plants and microbes put up a fight 10.1016/j.copbio.2005.03.010
Events in root colonization by pseudomonas putida 10.1007/978-94-017-9555-5_10
Jean ARMENGAUD
ARMENGAUD Jean
ORCID: 0000-0003-1589-445X
A novel -2Fe-2S- ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase. 10.1074/jbc.273.16.9622
The reductase RedA2 of the multi-component dioxin dioxygenase system of Sphingomonas sp. RW1 is related to class-I cytochrome P450-type reductases. 10.1046/j.1432-1327.1998.2530437.x
Molecular characterization of Fdx1, a putidaredoxin-type [2Fe-2S] ferredoxin able to transfer electrons to the dioxin dioxygenase of Sphingomonas sp. RW1. 10.1111/j.1432-1033.1997.00833.x
Characterization of a 2[4Fe-4S] ferredoxin obtained by chemical insertion of the Fe-S clusters into the apoferredoxin II from Rhodobacter capsulatus. 10.1111/j.1432-1033.1995.tb20712.x
Overexpression in Escherichia coli of the fdxA gene encoding Rhodobacter capsulatus ferredoxin II. 10.1006/prep.1995.1022
Addition of a class IIS enzyme site in the mutagenic primer to improve two-step PCR-based targeted mutagenesis. 10.1093/nar/21.18.4424
Production of a full length Tat protein in E. coli and its purification. 10.1016/0014-5793(91)80467-H
Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods. 10.1016/j.jprot.2015.06.017
Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes. 10.1038/ismej.2015.108
Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0. 10.1002/pmic.201500104
Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation. 10.3389/fmicb.2015.00342
High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field. 10.1186/s12864-015-1521-5
Functional distinctness in the exoproteomes of marine Synechococcus. 10.1111/1462-2920.12822
"You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions. 10.1002/pmic.201400562
Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans. 10.1002/pmic.201300535
Next-generation proteomics: toward customized biomarkers for environmental biomonitoring. 10.1021/es501673s
Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors. 10.1021/pr500984z
Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods. 10.1074/mcp.M114.038851
Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry. 10.1021/ac501840g
N-terminomics and proteogenomics, getting off to a good start. 10.1002/pmic.201400157
Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579. 10.1371/journal.pone.0107354
N- and O-acetylation of threonine residues in the context of proteomics. 10.1016/j.jprot.2014.06.005
Proteomics meets blue biotechnology: a wealth of novelties and opportunities. 10.1016/j.margen.2014.04.003
RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti. 10.1093/gbe/evu069
Low doses of gamma-irradiation induce an early bystander effect in zebrafish cells which is sufficient to radioprotect cells. 10.1371/journal.pone.0092974
The Brucella suis IbpA heat-shock chaperone is not required for virulence or for expression of the VirB type IV secretion system VirB8 protein. 10.1111/lam.12231
Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395. 10.1371/journal.pone.0089691
N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography. 10.1074/mcp.O113.032854
Non-model organisms, a species endangered by proteogenomics. 10.1016/j.jprot.2014.01.007
Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria. 10.1007/978-1-4939-1261-2_16
Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides. 10.1021/pr400774z
Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage. 10.1002/pmic.201300249
OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus. 10.1016/j.jprot.2013.10.024
Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1. 10.1111/1462-2920.12264
Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates. 10.1021/pr400554e
Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress. 10.1002/yea.2968
Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory. 10.1016/j.mimet.2013.07.021
Proteogenomics for environmental microbiology. 10.1002/pmic.201200576
Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring. 10.1016/j.jprot.2013.05.020
In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference. 10.1016/j.tiv.2013.04.008
The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones. 10.1371/journal.pone.0056558
Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN. 10.4161/cc.23367
Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation. 10.1186/1477-5956-11-3
Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry. 10.1016/j.jviromet.2012.10.003
4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate. 10.1074/jbc.M112.405019
Exoproteomics: exploring the world around biological systems. 10.1586/epr.12.52
Draft genome sequence of Citreicella aestuarii strain 357, a member of the Roseobacter clade isolated without xenobiotic pressure from a petroleum-polluted beach. 10.1128/JB.01261-12
Microbiology and proteomics, getting the best of both worlds! 10.1111/j.1462-2920.2012.02811.x
Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus. 10.1111/j.1462-2920.2012.02812.x
A comparative proteomic approach to better define Deinococcus nucleoid specificities. 10.1016/j.jprot.2012.03.002
High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade. 10.1186/1471-2164-13-73
Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus. 10.1074/mcp.M111.013102
Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria. 10.1074/mcp.M111.013110
Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics. 10.1016/j.jprot.2011.10.025
Proteomic insights into the lifestyle of an environmentally relevant marine bacterium. 10.1038/ismej.2011.86
Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value. 10.2174/187569210793368230
Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy. 10.1074/jbc.M110.159483
In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study. 10.3390/md8082223
Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea. 10.1093/molbev/msq096
Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions. 10.1074/mcp.M000027-MCP201
Proteogenomics and systems biology: quest for the ultimate missing parts. 10.1586/epr.09.104
Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons. 10.1074/mcp.M900359-MCP200
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. 10.1186/gb-2009-10-6-r70
A perfect genome annotation is within reach with the proteomics and genomics alliance. 10.1016/j.mib.2009.03.005
ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr. 10.1128/JB.00321-09
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti. 10.1371/journal.pgen.1000434
ApoFnr binds as a monomer to promoters regulating the expression of enterotoxin genes of Bacillus cereus. 10.1128/JB.00336-08
Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate. 10.1002/jms.1328
Determination of estrogen presence in water by SPR using estrogen receptor dimerization. 10.1007/s00216-007-1725-x
Structural insights into a new homodimeric self-activated GTPase family. 10.1038/sj.embor.7400958
THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain. 10.1093/nar/gkl145
Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA. 10.1016/j.jmb.2005.12.087
Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction. 10.1007/s00775-005-0069-2
Deciphering structure and topology of conserved COG2042 orphan proteins. 10.1186/1472-6807-5-3
Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product. 10.1107/S1744309105000035
N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota. 10.1074/jbc.M403845200
Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi. 10.1074/jbc.M301891200
Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31. 10.1007/s00203-002-0399-1
In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures. 10.1021/bi0113364
Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71. 10.1128/JB.183.3.997-1011.2001
Crystallization and preliminary X-ray diffraction analysis of a [2Fe-2S] ferredoxin (FdVI) from Rhodobacter capsulatus. 10.1107/S0907444900017832
Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation. 10.1128/JB.182.19.5580-5585.2000
A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase. 10.1128/JB.182.8.2238-2244.2000
Gammarids as Reference Species for Freshwater Monitoring 10.1016/b978-0-12-800949-9.00011-5
Molecular Genetics of the Degradation of Dioxins by Bacteria 10.1007/978-3-662-06068-1_4
Novel quantitative proteomic strategies for assessing metals nephrotoxicity in rats 10.1016/j.toxlet.2009.06.286
A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion 10.4161/cc.10.11.15763
Systems Biology and Synthetic Biology: Understanding Biological Complexity on the Critical Path to Personalized Medicine 10.2174/187569210793368186
Proteogenomics for the Enhanced Discovery of Bacterial Biomarkers 10.1007/978-94-017-9238-7_11
The importance of recognizing and reporting sequence database contamination for proteomics 10.1016/j.euprot.2014.04.001
PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi 10.2210/pdb1yr6/pdb
PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi 10.2210/pdb1yr7/pdb
PAB0955 crystal structure : a GTPase in GTP bound form from Pyrococcus abyssi 10.2210/pdb1yr8/pdb
PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi 10.2210/pdb1yr9/pdb
PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi 10.2210/pdb1yra/pdb
PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi 10.2210/pdb1yrb/pdb
Electron Transport to Nitrogenase in the Photosynthetic Bacterium Rhodobacter Capsulatus 10.1007/978-94-009-0173-5_417
PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi (after GTP hydrolysis) 10.2210/pdb2oxr/pdb
Ferredoxin-Mediated Reactivation of Catechol Dioxygenase Improves Aromatic Ring Cleavage in Pseudomonads 10.1007/978-1-4615-4749-5_12
Particulate cobalt and soluble cobalt: Same metal but different toxicities as assessed by cellular biology and innovative proteomic approaches 10.1016/j.toxlet.2010.03.964
Structure of PACE12, an archaebacterial protein with GTPase activity and of unknown biological function 10.1107/s0108767304097491
Structure of a PACE protein: PAB0955, first member of new GTPase family 10.1107/s0108767305079468
Crystal Structure of DR_1245 from Deinococcus radiodurans 10.2210/pdb4h5b/pdb
Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods. 10.1021/acs.est.7b03736
In Vino Veritas: An Invitation for Ambitious, Collaborative Proteogenomics Campaigns on Plant and Animal Models. 10.1002/pmic.201700324
Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1. 10.1002/pmic.201700211
The species origin of the serum in the culture medium influences the in vitro toxicity of silica nanoparticles to HepG2 cells. 10.1371/journal.pone.0182906
Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus. 10.3389/fmicb.2017.01342
Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study. 10.1016/j.aquatox.2017.07.007
Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants. 10.1016/j.dib.2017.07.009
Nutrient recycling facilitates long-term stability of marine microbial phototroph-heterotroph interactions. 10.1038/nmicrobiol.2017.100
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. 10.1038/ncomms15300
Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae. 10.3389/fmicb.2017.00720
Experimental separation steps influence the protein content of corona around mesoporous silica nanoparticles. 10.1039/c7nr01654a
Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry. 10.1007/s00216-017-0348-0
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria. 10.1002/mbo3.477
Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil. 10.1128/genomea.00092-17
Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry. 10.1007/978-1-4939-7037-7_6
Exoproteomics of Pathogens: Analysis of Toxins and Other Virulence Factors by Proteomics. 10.1016/bs.mie.2016.09.033
Emerin self-assembly mechanism: role of the LEM domain. 10.1111/febs.13983
Striking against bioterrorism with advanced proteomics and reference methods. 10.1002/pmic.201600412
The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome. 10.1039/c6nr04765c
Reannotation of Genomes by Means of Proteomics Data. 10.1016/bs.mie.2016.09.019
RNA-binding proteins are a major target of silica nanoparticles in cell extracts. 10.1080/17435390.2016.1244299
Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus gammatolerans. 10.1021/acs.chemrestox.6b00128
Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum. 10.1016/j.dib.2016.07.045
Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579. 10.1016/j.dib.2016.07.042
High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum. 10.1016/j.jprot.2016.07.007
Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics. 10.1016/j.jprot.2016.06.022
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200. 10.1007/s00792-016-0822-1
Next-generation proteomics faces new challenges in environmental biotechnology. 10.1016/j.copbio.2016.02.025
Mass spectrometry for the detection of bioterrorism agents: from environmental to clinical applications. 10.1002/jms.3747
Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline. 10.1074/mcp.m115.050989
PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria. 10.1128/msphere.00036-15
Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts. 10.1038/ncomms10324
Post-translational methylations of the archaeal Mre11:Rad50 complex throughout the DNA damage response. 10.1111/mmi.13322
Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach. 10.1111/1751-7915.12328
Clinical implications of recent advances in proteogenomics. 10.1586/14789450.2016.1132169
Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors. 10.3389/fmicb.2015.01004
Microbiomes - embracing complexity. 10.1002/pmic.201570183
Proteomics of the Roseobacter clade, a window to the marine microbiology landscape. 10.1002/pmic.201500222
The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA. 10.1099/mic.0.000186
Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria. 10.1111/mmi.13209
Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics. 10.1371/journal.pone.0135065
Data for comparative proteomics of ovaries from five non-model, crustacean amphipods. 10.1016/j.dib.2015.07.037
Power of positive thinking in quantitative proteomics. 10.1002/pmic.201500307
Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. 10.1016/j.resmic.2019.04.002
The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments 10.1016/j.jprot.2019.04.016
Omics of the early molecular dialogue between Frankia alni and Alnus glutinosa and the cellulase synton. 10.1111/1462-2920.14606
The Rhodobacter sphaeroides methionine sulfoxide reductase MsrP can reduce R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates 10.1101/243626
Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics 10.1007/s11356-018-3341-z
Proteomics data for characterizing Microbacterium oleivorans A9, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant 10.1016/j.dib.2018.10.136
Rhodobacter sphaeroides methionine sulfoxide reductase P reduces R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates 10.1042/BCJ20180706
Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum 10.1038/s41598-019-44203-5
C-terminal proteolysis of the collagen VI α3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes 10.1074/jbc.RA119.008641
De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups 10.1038/s41597-019-0192-5
Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild 10.1016/j.dib.2019.104650
Advanced Proteomics as a Powerful Tool for Studying Toxins of Human Bacterial Pathogens 10.3390/toxins11100576
Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot. 10.1126/scitranslmed.aaw3163
Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry. 10.3389/fmicb.2019.01985
Proteases as secreted exoproteins in mycoplasmas from ruminant lungs and impact on surface exposed proteins. 10.1128/aem.01439-19
Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale. 10.1016/j.scitotenv.2019.133760
Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium. 10.1016/j.aquatox.2019.105244
Titanium Dioxide Nanoparticles Alter the Cellular Phosphoproteome in A549 Cells 10.3390/nano10020185
Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter 10.3390/nano10020240
Quick microbial molecular phenotyping by differential shotgun proteomics 10.1111/1462-2920.14975
Estimating relative biomasses of organisms in microbiota using “phylopeptidomics” 10.1186/s40168-020-00797-x
The importance of naturally attenuated SARS-CoV-2in the fight against COVID-19. 10.1111/1462-2920.15039
Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms 10.1002/pmic.201900261
Shortlisting SARS‐CoV‐2 Peptides for Targeted Studies from Experimental Data‐Dependent Acquisition Tandem Mass Spectrometry Data 10.1002/pmic.202000107
Bioactive Potential of Extracts of Labrenzia aggregata Strain USBA 371, a Halophilic Bacterium Isolated from a Terrestrial Source 10.3390/molecules25112546
Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host 10.1038/s41522-020-0133-2
The proteomics contribution to the counter-bioterrorism toolbox in the post-COVID-19 era 10.1080/14789450.2020.1822745
Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1 (12) and mineral 10.1111/1462-2920.15159
Shotgun proteomics of SARS-CoV-2 infected cells and its application to the optimisation of whole viral particle antigen production for vaccines 10.1101/2020.04.17.046193
Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature 10.3390/toxins12100645
Proteotyping Environmental Microorganisms by Phylopeptidomics: Case Study Screening Water from a Radioactive Material Storage Pool 10.3390/microorganisms8101525
Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core 10.3390/microorganisms8121857
Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics 10.3390/microorganisms8121876
Proteomics in the COVID‐19 Battlefield: First Semester Check‐Up 10.1002/pmic.202000198
Ionizing-radiation-resistant Kocuria rhizophila PT10 isolated from the Tunisian Sahara xerophyte Panicum turgidum: Polyphasic characterization and proteogenomic arsenal. 10.1016/j.ygeno.2020.11.029
Intrinsic non-stomatal resilience to drought of the photosynthetic apparatus in Coffea spp. is strengthened by elevated air [CO2]. 10.1093/treephys/tpaa158
Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. 10.1038/s41564-020-00827-2
Lysine-specific acetylated proteome from the archaeon Thermococcus gammatolerans reveals the presence of acetylated histones. 10.1016/j.jprot.2020.104044
Groundwater promotes emergence of asporogenic mutants of emetic Bacillus cereus. 10.1111/1462-2920.15203
Resilient and Sensitive Key Points of the Photosynthetic Machinery of Coffea spp. to the Single and Superimposed Exposure to Severe Drought and Heat Stresses. 10.3389/fpls.2020.01049
BMP-1 disrupts cell adhesion and enhances TGF-β activation through cleavage of the matricellular protein thrombospondin-1. 10.1126/scisignal.aba3880
Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines. 10.1080/22221751.2020.1791737
Roadmap for naming uncultivated Archaea and Bacteria. 10.1038/s41564-020-0733-x
Post-production modifications of murine mesenchymal stem cell (mMSC) derived extracellular vesicles (EVs) and impact on their cellular interaction. 10.1016/j.biomaterials.2019.119675
Complete Genome Sequences of Four Microbacterium Strains Isolated from Metal- and Radionuclide-Rich Soils. 10.1128/mra.00846-19
Biosafety of Mesoporous Silica Nanoparticles. 10.3390/biomimetics3030022
Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment. 10.1016/j.jprot.2018.12.001
Improving Quality Control of Contagious Caprine Pleuropneumonia Vaccine with Tandem Mass Spectrometry. 10.1002/pmic.201800088
Time-course proteomics dataset to monitor protein-bound methionine oxidation in Bacillus cereus ATCC 14579. 10.1016/j.dib.2018.03.030
Importance of Post-translational Modifications in the Interaction of Proteins with Mineral Surfaces: The Case of Arginine Methylation and Silica surfaces. 10.1021/acs.langmuir.8b00752
Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum. 10.1038/s41598-018-22235-7
The PEG-responding desiccome of the alder microsymbiont Frankia alni. 10.1038/s41598-017-18839-0
Proteogenomic insights into uranium tolerance of a Chernobyl's Microbacterium bacterial isolate. 10.1016/j.jprot.2017.11.021
The COVID-19 MS Coalition-accelerating diagnostics, prognostics, and treatment. 10.1016/s0140-6736(20)31211-3
P084 Quick full-range determination of the composition of the cystic fibrosis lung microbiome from sputum by phylopeptidomics 10.1016/s1569-1993(20)30419-7
Microbiology and infectious diseases – A wealth of novelty for the clinical laboratory 10.1016/j.clinms.2019.04.005
Pathogen proteotyping: A rapidly developing application of mass spectrometry to address clinical concerns 10.1016/j.clinms.2019.04.004
Digging Deeper Into the Pyriproxyfen-Response of the Amphipod Gammarus fossarum With a Next-Generation Ultra-High-Field Orbitrap Analyser: New Perspectives for Environmental Toxicoproteomics 10.3389/fenvs.2018.00054
Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows 10.1101/2021.03.05.433915
Taxonomical and functional changes in COVID-19 faecal microbiome are related to SARS-CoV-2 faecal load 10.21203/rs.3.rs-414136/v1
Methionine Sulfoxide Reductases Contribute to Anaerobic Fermentative Metabolism in Bacillus cereus 10.3390/antiox10050819
Metaproteomics to Decipher CF Host-Microbiota Interactions: Overview, Challenges and Future Perspectives 10.3390/genes12060892
Cysteine Proteome Reveals Response to Endogenous Oxidative Stress in Bacillus cereus 10.3390/ijms22147550
Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome 10.1021/acs.est.1c02385
A Proteomic Study Suggests Stress Granules as New Potential Actors in Radiation-Induced Bystander Effects 10.3390/ijms22157957
Carlos Molina-Santiago
Molina-Santiago Carlos / Molina-Santiago, C
ORCID: 0000-0002-1131-8917
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E. 10.1111/1462-2920.12775
GtrS and GltR form a two-component system: the central role of 2-ketogluconate in the expression of exotoxin A and glucose catabolic enzymes in Pseudomonas aeruginosa. 10.1093/nar/gku496
Bactericidal and bacteriostatic antibiotics and the Fenton reaction. 10.1111/1751-7915.12120
Interspecies signalling: Pseudomonas putida efflux pump TtgGHI is activated by indole to increase antibiotic resistance. 10.1111/1462-2920.12368
Fructooligosacharides reduce Pseudomonas aeruginosa PAO1 pathogenicity through distinct mechanisms. 10.1371/journal.pone.0085772
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital 10.1371/journal.pone.0081604
Identification of new residues involved in intramolecular signal transmission in a prokaryotic transcriptional repressor. 10.1128/JB.00589-13
Antibiotic adjuvants: identification and clinical use. 10.1111/1751-7915.12044
Evolution of antibiotic resistance, catabolic pathways and niche colonization. 10.1111/j.1751-7915.2012.00335.x
Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440. 10.1128/AAC.05398-11
Directed evolution, natural products for cancer chemotherapy, and micro-biosensing robots. 10.1111/j.1751-7915.2011.00267.x
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. 10.1111/1462-2920.13585
Pseudomonas putida as a platform for the synthesis of aromatic compounds. 10.1099/mic.0.000333
A Pseudomonas putida double mutant deficient in butanol assimilation: a promising step for engineering a biological biofuel production platform. 10.1093/femsle/fnw018
Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach. 10.1111/1751-7915.12328
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics. 10.1111/1751-7915.12295
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. 10.1093/femsre/fuv006
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli 10.1111/1758-2229.12553
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J 10.1111/1758-2229.12245
Diversity of small RNAs expressed in Pseudomonas species 10.1111/1758-2229.12233
Insights in a novel gram‐positive type IV secretion system 10.1111/1462-2920.14296
The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization 10.1038/s41467-019-09944-x
Microbiomes as the new keystone for life sciences development 10.1111/1751-7915.13424
Chemical fertilization: a short‐term solution for plant productivity? 10.1111/1751-7915.13515
Dual functionality of the amyloid protein TasA in Bacillus physiology and fitness on the phylloplane 10.1038/s41467-020-15758-z
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide. 10.3389/fmicb.2020.00202
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages. 10.1016/j.foodchem.2019.125290
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production. 10.1111/1751-7915.13269
The race for antimicrobials in the multidrug resistance era. 10.1111/1751-7915.12884
More than words: the chemistry behind the interactions in the plant holobiont 10.1111/1462-2920.15197
Estrella Duque
Duque Estrella
ORCID: 0000-0002-4857-8974
The pangenome of the genus Clostridium. 10.1111/1462-2920.13732
Pseudomonas putida as a platform for the synthesis of aromatic compounds. 10.1099/mic.0.000333
Genetic and functional characterization of a novel meta-pathway for degradation of naringenin in Herbaspirillum seropedicae SmR1. 10.1111/1462-2920.13313
Specific Gene Loci of Clinical Pseudomonas putida Isolates. 10.1371/journal.pone.0147478
Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach. 10.1111/1751-7915.12328
First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid. 10.1111/1751-7915.12333
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium. 10.1128/genomea.00904-15
Analysis of the pathogenic potential of nosocomial Pseudomonas putida strains. 10.3389/fmicb.2015.00871
Analysis of the core genome and pangenome of Pseudomonas putida. 10.1111/1462-2920.13015
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. 10.1093/femsre/fuv006
Contribution of arbuscular mycorrhizal fungi and/or bacteria to enhancing plant drought tolerance under natural soil conditions: effectiveness of autochthonous or allochthonous strains. 10.1016/j.jplph.2014.08.019
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440. 10.1111/1758-2229.12167
Restoration of a Mediterranean forest after a fire: bioremediation and rhizoremediation field-scale trial. 10.1111/1751-7915.12138
Interspecies signalling: Pseudomonas putida efflux pump TtgGHI is activated by indole to increase antibiotic resistance. 10.1111/1462-2920.12368
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital. 10.1371/journal.pone.0081604
Identification of new residues involved in intramolecular signal transmission in a prokaryotic transcriptional repressor. 10.1128/jb.00589-13
Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome. 10.1111/1751-7915.12061
In vivo gene expression of Pseudomonas putida KT2440 in the rhizosphere of different plants. 10.1111/1751-7915.12037
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1. 10.1111/1462-2920.12037
The Pseudomonas putida HskA hybrid sensor kinase controls the composition of the electron transport chain. 10.1111/1758-2229.12017
Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil. 10.1111/j.1751-7915.2012.00358.x
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants. 10.1016/j.febslet.2012.07.031
Enhanced tolerance to naphthalene and enhanced rhizoremediation performance for Pseudomonas putida KT2440 via the NAH7 catabolic plasmid. 10.1128/aem.00619-12
Identification of reciprocal adhesion genes in pathogenic and non-pathogenic Pseudomonas. 10.1111/j.1462-2920.2012.02732.x
Responses of Pseudomonas putida to toxic aromatic carbon sources. 10.1016/j.jbiotec.2012.01.026
Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440. 10.1128/aac.05398-11
Laboratory research aimed at closing the gaps in microbial bioremediation. 10.1016/j.tibtech.2011.06.007
Bacterial chemotaxis towards aromatic hydrocarbons in Pseudomonas. 10.1111/j.1462-2920.2011.02493.x
The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment. 10.1111/j.1462-2920.2011.02492.x
Transcriptional control of the main aromatic hydrocarbon efflux pump in Pseudomonas. 10.1111/j.1758-2229.2011.00255.x
Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1. 10.1128/jb.01281-10
Characterization of the RND family of multidrug efflux pumps: in silico to in vivo confirmation of four functionally distinct subgroups. 10.1111/j.1751-7915.2010.00189.x
Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: differential chemotactic response towards receptor ligands. 10.1074/jbc.m110.110403
Identification of conditionally essential genes for growth of Pseudomonas putida KT2440 on minimal medium through the screening of a genome-wide mutant library. 10.1111/j.1462-2920.2010.02166.x
Global regulation of food supply by Pseudomonas putida DOT-T1E. 10.1128/jb.01129-09
Identification and characterization of the PhhR regulon in Pseudomonas putida. 10.1111/j.1462-2920.2009.02124.x
Physiological and transcriptomic characterization of a fliA mutant of Pseudomonas putida KT2440. 10.1111/j.1758-2229.2009.00084.x
Exploiting environmental niches and the potential of environmental microbes. 10.1111/j.1758-2229.2009.00072.x
A general profile for the MerR family of transcriptional regulators constructed using the semi-automated Provalidator tool. 10.1111/j.1758-2229.2009.00067.x
Responses of Pseudomonas to small toxic molecules by a mosaic of domains. 10.1016/j.mib.2009.02.001
Microbial responses to xenobiotic compounds. Identification of genes that allow Pseudomonas putida KT2440 to cope with 2,4,6-trinitrotoluene. 10.1111/j.1751-7915.2009.00085.x
Functional analysis of aromatic biosynthetic pathways in Pseudomonas putida KT2440. 10.1111/j.1751-7915.2008.00062.x
Physiological responses of Pseudomonas putida to formaldehyde during detoxification. 10.1111/j.1751-7915.2007.00014.x
A set of activators and repressors control peripheral glucose pathways in Pseudomonas putida to yield a common central intermediate. 10.1128/jb.01726-07
Rhizoremediation of lindane by root-colonizing Sphingomonas. 10.1111/j.1751-7915.2007.00004.x
Temperature and pyoverdine-mediated iron acquisition control surface motility of Pseudomonas putida. 10.1111/j.1462-2920.2007.01286.x
The RpoT regulon of Pseudomonas putida DOT-T1E and its role in stress endurance against solvents. 10.1128/jb.00950-06
Involvement of cyclopropane fatty acids in the response of Pseudomonas putida KT2440 to freeze-drying. 10.1128/aem.72.1.472-477.2006
Plasmolysis induced by toluene in a cyoB mutant of Pseudomonas putida. 10.1111/j.1462-2920.2004.00621.x
Biotransformation in double-phase systems: physiological responses of Pseudomonas putida DOT-T1E to a double phase made of aliphatic alcohols and biosynthesis of substituted catechols. 10.1128/aem.70.6.3637-3643.2004
Fatty acid biosynthesis is involved in solvent tolerance in Pseudomonas putida DOT-T1E. 10.1111/j.1462-2920.2004.00578.x
Transcriptional phase variation at the flhB gene of Pseudomonas putida DOT-T1E is involved in response to environmental changes and suggests the participation of the flagellar export system in solvent tolerance. 10.1128/jb.186.6.1905-1909.2004
Mechanisms of solvent tolerance in gram-negative bacteria. 10.1146/annurev.micro.56.012302.161038
Mutations in genes involved in the flagellar export apparatus of the solvent-tolerant Pseudomonas putida DOT-T1E strain impair motility and lead to hypersensitivity to toluene shocks. 10.1128/jb.183.14.4127-4133.2001
Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E. 10.1128/jb.183.13.3967-3973.2001
A WbpL mutant of Pseudomonas putida DOT-T1E strain, which lacks the O-antigenic side chain of lipopolysaccharides, is tolerant to organic solvent shocks. 10.1007/s007920100176
Global and cognate regulators control the expression of the organic solvent efflux pumps TtgABC and TtgDEF of Pseudomonas putida. 10.1046/j.1365-2958.2001.02310.x
Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions. 10.1016/s0038-0717(99)00156-x
Multiple responses of gram-negative bacteria to organic solvents. 10.1046/j.1462-2920.1999.00033.x
Mechanisms for solvent tolerance in bacteria. 10.1074/jbc.272.7.3887
Metabolism of nitrate esters by a consortium of two bacteria. 10.1038/nbt0396-320
Isolation and expansion of the catabolic potential of a Pseudomonas putida strain able to grow in the presence of high concentrations of aromatic hydrocarbons. 10.1128/jb.177.14.3911-3916.1995
Construction of a Pseudomonas hybrid strain that mineralizes 2,4,6-trinitrotoluene. 10.1128/jb.175.8.2278-2283.1993
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production 10.1111/1751-7915.13269
Summary of the Sussex-Huawei locomotion-transportation recognition challenge
Observation of a manifold in the chaotic phase space of an asymmetric optical microcavity
Localized temporal variation of Earth's inner-core boundary from high-quality waveform doublets
Off-axis multi-wavelength dispersion controlling metalens for multi-color imaging
Impact of United States political sanctions on international collaborations and research in Iran