Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance
Leise Riber Pernille Hasse Busk Poulsen Waleed Abu Al-Soud Lea Benedicte Skov Hansen Lasse Bergmark Asker Brejnrod Anders Norman Lars Hestbjerg Hansen Jakob Magid Søren Johannes Sørensen
Asker Brejnrod
Brejnrod Asker
ORCID: 0000-0002-1327-2051
The developing hypopharyngeal microbiota in early life 10.1186/s40168-016-0215-9
A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation 10.1002/mnfr.201600528
Coping with copper 10.1093/femsec/fiw175
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies 10.1186/s40168-016-0208-8
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts 10.1111/jam.12584
Soil bacteria show different tolerance ranges to an unprecedented disturbance 10.1007/s00374-017-1255-4
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities 10.1128/AEM.02755-17
Eosinophilic airway inflammation in asthmatic patients is associated with an altered airway microbiome 10.1016/j.jaci.2016.10.046
Deciphering conjugative plasmid permissiveness in wastewater microbiomes 10.1111/mec.14138
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity 10.1038/s41598-017-16007-y
Local diversity of heathland Cercozoa explored by in-depth sequencing 10.1038/ismej.2016.31
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment 10.1016/j.fm.2015.04.008
Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora 10.1128/genomeA.00026-17
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Genetic barcoding of dark-spored myxomycetes (Amoebozoa) 10.1111/1755-0998.12725
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period 10.1371/journal.pone.0187858
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium 10.1038/ismej.2015.14
Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation 10.3389/fmicb.2017.01832
In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment 10.1128/AEM.01450-18
Papio spp. Colon microbiome and its link to obesity in pregnancy 10.1111/jmp.12366
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children 10.1016/j.ebiom.2018.11.035
Stability and resilience of the intestinal microbiota in children in daycare - a 12 month cohort study 10.1186/s12866-018-1367-5
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages 10.1186/s40168-018-0606-1
The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome 10.1002/mnfr.201700976
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass 10.1016/j.ijfoodmicro.2019.02.003
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites 10.1016/j.envint.2019.02.048
Variations in microbiome composition of sewer biofilms due to ferrous and ferric iron dosing 10.1080/23311843.2019.1595293
Treatment of Active Crohn's Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition 10.1053/j.gastro.2018.12.002
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps 10.1007/s00248-019-01347-1
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma 10.1038/s41467-019-12989-7
The human milk microbiota is modulated by maternal diet 10.3390/microorganisms7110502
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms 10.1038/s41396-019-0494-9
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial 10.1038/s41467-020-14308-x
Implementations of the chemical structural and compositional similarity metric in R and Python 10.1101/546150
Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age 10.3390/nu12041081
Ecological succession in the vaginal microbiota during pregnancy and birth 10.1038/s41396-020-0686-3
Modeling transfer of vaginal microbiota from mother to infant in early life 10.7554/eLife.57051
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs 10.1101/2021.01.26.428250
Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment 10.1101/2021.06.04.446988
Leise Riber
Riber Leise
ORCID: 0000-0003-4793-6095
HipA-Mediated Phosphorylation of SeqA Does not Affect Replication Initiation in Escherichia coli. 10.3389/fmicb.2018.02637
A Robust Proton Flux (pHlux) Assay for Studying the Function and Inhibition of the Influenza A M2 Proton Channel. 10.1021/acs.biochem.8b00721
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives. 10.1016/j.plasmid.2018.08.002
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer. 10.1038/s41396-018-0183-0
Fluorescence Recovery Allows the Implementation of a Fluorescence Reporter Gene Platform Applicable for the Detection and Quantification of Horizontal Gene Transfer in Anoxic Environments. 10.1128/AEM.02507-17
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome. 10.1016/j.jhazmat.2017.09.046
Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season. 10.1016/j.envpol.2017.07.026
Countermeasures to survive excessive chromosome replication in Escherichia coli. 10.1007/s00294-017-0725-4
Deciphering conjugative plasmid permissiveness in wastewater microbiomes. 10.1111/mec.14138
Diverse gene functions in a soil mobilome 10.1016/j.soilbio.2016.07.018
Type 3 Fimbriae Encoded on Plasmids Are Expressed from a Unique Promoter without Affecting Host Motility, Facilitating an Exceptional Phenotype That Enhances Conjugal Plasmid Transfer. 10.1371/journal.pone.0162390
Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels. 10.1016/j.plasmid.2016.10.001
Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner. 10.1038/ismej.2016.98
Multiple DNA Binding Proteins Contribute to Timing of Chromosome Replication in E. coli. 10.3389/fmolb.2016.00029
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law. 10.1002/biot.201400537
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community. 10.1038/ismej.2014.191
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance. 10.1111/1574-6941.12403
An improved method for including upper size range plasmids in metamobilomes. 10.1371/journal.pone.0104405
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes. 10.1371/journal.pone.0068484
Investigating the diversity of pseudomonas spp. in soil using culture dependent and independent techniques. 10.1007/s00284-013-0382-x
Suppressors of DnaA(ATP) imposed overinitiation in Escherichia coli. 10.1111/j.1365-2958.2010.07493.x
Microarray-based genotyping of Salmonella: inter-laboratory evaluation of reproducibility and standardization potential. 10.1016/j.ijfoodmicro.2010.08.007
Loss of Hda activity stimulates replication initiation from I-box, but not R4 mutant origins in Escherichia coli. 10.1111/j.1365-2958.2008.06516.x
Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome. 10.1101/gad.379506
Coordinated replication and sequestration of oriC and dnaA are required for maintaining controlled once-per-cell-cycle initiation in Escherichia coli. 10.1128/JB.187.16.5605-5613.2005
Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments 10.1016/j.jhazmat.2019.121173
Inhibition of Escherichia coli chromosome replication by rifampicin treatment or during the stringent response is overcome by de novo DnaA protein synthesis 10.1111/mmi.14531
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination 10.1093/femsec/fiaa200
Bacterial Chromosome Replication and DNA Repair During the Stringent Response. 10.3389/fmicb.2020.582113
Epigenetic Memories: The Hidden Drivers of Bacterial Persistence? 10.1016/j.tim.2020.12.005
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms. 10.1016/j.plasmid.2021.102576
Extension of Plant Phenotypes by the Foliar Microbiome. 10.1146/annurev-arplant-080620-114342
Waleeed Abu Al-Soud
Abu Al-Soud Waleeed
ORCID: 0000-0002-1143-9233
The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice 10.14814/phy2.13881
Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity 10.1016/j.biortech.2018.09.006
Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
Rifaximin has minor effects on bacterial composition, inflammation, and bacterial translocation in cirrhosis: A randomized trial 10.1111/jgh.13852
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period 10.1371/journal.pone.0187858
A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil 10.1371/journal.pone.0187116
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome 10.1016/j.jhazmat.2017.09.046
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies 10.1186/s40168-016-0208-8
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies 10.1093/femsec/fiw087
Local diversity of heathland Cercozoa explored by in-depth sequencing 10.1038/ismej.2016.31
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters 10.1038/ismej.2016.16
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques 10.1016/j.ijfoodmicro.2015.09.012
Microbial diversity in a permanently cold and alkaline environment in Greenland 10.1371/journal.pone.0124863
Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission 10.1111/1462-2920.12827
Metabolic variability in bioprocessing: Implications of microbial phenotypic heterogeneity 10.1016/j.tibtech.2014.10.002
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment 10.1111/1462-2920.12539
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts 10.1111/jam.12584
Loss of microbial diversity in soils is coincident with reductions in some specialized functions 10.1111/1462-2920.12353
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: Microbial community composition and dynamics 10.1111/1751-7915.12079
454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters 10.1111/1574-6941.12148
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing 10.1016/j.soilbio.2011.12.023
Culture-dependent and -independent investigations of microbial diversity on urinary catheters. 10.1128/jcm.01237-12
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure. 10.1128/aem.01071-12
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing 10.1111/j.1574-6968.2012.02601.x
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing 10.1016/j.jbiotec.2012.01.020
Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing 10.1371/journal.pone.0023321
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria 10.1371/journal.pone.0019223
Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing 10.1016/j.idairyj.2010.10.007
Detection of Helicobacter rodentium-like DNA in the liver tissue of patients with chronic liver diseases by polymerase chain reaction-denaturing gradient gel electrophoresis and DNA sequence analysis 10.1016/j.diagmicrobio.2010.07.001
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults 10.1371/journal.pone.0009085
Non-pylori helicobacteraceae in the upper digestive tract of asymptomatic Venezuelan subjects: Detection of Helicobacter cetorum-like and candidatus Wolinella africanus-like DNA 10.1111/j.1523-5378.2007.00526.x
Detection of Helicobacter species in chronic liver disease and chronic inflammatory bowel disease 10.1080/07853890701545714
Detection of Helicobacter species in liver and stomach tissues of patients with chronic liver diseases using polymerase chain reaction-denaturing gradient gel electrophoresis and immunohistochemistry 10.1080/00365520510023251
Expression of matrix metalloprotease-2, -7 and -9 on human colon, liver and bile duct cell lines by enteric and gastric Helicobacter species 10.1016/j.femsim.2004.11.009
Characterization of the PCR inhibitory effect of bile to optimize real-time PCR detection of Helicobacter species 10.1016/j.femsim.2004.12.004
Helicobacter pylori and other Helicobacter species in gallbladder and liver of patients with chronic cholecystitis detected by immunological and molecular methods 10.1080/00365520410009546
Detection of Helicobacter ganmani-like 16S rDNA in pediatric liver tissue 10.1111/j.1083-4389.2004.00266.x
High prevalence of Helicobacter species detected in laboratory mouse strains by multiplex PCR-denaturing gradient gel electrophoresis and pyrosequencing 10.1128/JCM.42.8.3781-3788.2004
Prevalence of Helicobacter pylori infection among adult dyspeptic patients in Ethiopia 10.1179/000349804225003190
Assessment of PCR-DGGE for the identification of diverse Helicobacter species, and application to faecal samples from zoo animals to determine Helicobacter prevalence 10.1099/jmm.0.05314-0
Influence of activated charcoal, porcine gastric mucin and β-cyclodextrin on the morphology and growth of intestinal and gastric Helicobacter spp. 10.1099/00221287-148-3-677
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Detection of pathogenic Yersinia enterocolitica in enrichment media and pork by a multiplex PCR: a study of sample preparation and PCR-inhibitory components. 10.1016/s0168-1605(98)00152-4
Absence of species in the liver of patients with primary or metastatic liver cancer 10.1053/jhep.2003.50262
It is elemental: soil nutrient stoichiometry drives bacterial diversity 10.1111/1462-2920.13642
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil 10.1016/j.soilbio.2011.06.019
Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meat 10.1128/jcm.38.12.4463-4470.2000
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07 10.1111/j.1574-6941.2010.01024.x
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics 10.1007/s00253-012-4057-5
A sample preparation method which facilitates detection of bacteria in blood cultures by the polymerase chain reaction 10.1016/S0167-7012(98)00015-3
The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria 10.1016/j.mimet.2009.08.006
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities 10.1111/j.1365-2745.2011.01894.x
Investigation of Burkholderia cepacia nosocomial outbreak with high fatality in patients suffering from diseases other than cystic fibrosis 10.1080/00365540410027166
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass 10.1016/j.ijfoodmicro.2019.02.003
Effect of cold starvation, acid stress, and nutrients on metabolic activity of helicobacter pylori 10.1128/AEM.68.1.11-19.2002
Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming 10.1016/j.soilbio.2015.06.027
Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic 10.1111/j.1574-6941.2010.01016.x
PCR-denaturing Gradient Gel Electrophoresis and two feces antigen tests for detection of Helicobacter pylori in mice 10.1007/s00284-002-3952-x
The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR 10.1016/j.ijfoodmicro.2011.11.014
Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments 10.1016/j.jhazmat.2019.121173
Prevalence of Helicobacter pylori vacA and cagA genotypes in Ethiopian dyspeptic patients 10.1128/JCM.42.6.2682-2684.2004
DNA-and RNA-SIP reveal Nitrospira spp. As key drivers of nitrification in groundwater-fed biofilters 10.1128/mBio.01870-19
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: A randomized, double-blinded cross-over trial 10.1111/1574-6941.12397
The developing hypopharyngeal microbiota in early life 10.1186/s40168-016-0215-9
Azo dying of α-keratin material improves microbial keratinase screening and standardization 10.1111/1751-7915.13541
Biotechnical use of polymerase chain reaction for microbiological analysis of biological samples 10.1016/S1387-2656(00)05033-X
Impact of long-term diesel contamination on soil microbial community structure 10.1128/AEM.02747-12
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows 10.3168/jds.2017-14366
The bacterial microbiota in first-void urine from men with and without idiopathic urethritis 10.1371/journal.pone.0201380
Deciphering conjugative plasmid permissiveness in wastewater microbiomes 10.1111/mec.14138
Investigating the diversity of pseudomonas spp. in soil using culture dependent and independent techniques 10.1007/s00284-013-0382-x
Starch-hydrolyzing bacteria from Ethiopian soda lakes 10.1007/s007920100183
Capacity of nine thermostable DNA polymerases to mediate DNA amplification in the presence of PCR-inhibiting samples 10.1128/aem.64.10.3748-3753.1998
DNA of Helicobacter spp. and common gut bacteria in primary liver carcinoma 10.1016/j.dld.2007.09.011
Bacterial community structure in high-arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation 10.3402/polar.v32i0.17390
INVESTIGATION OF THE BACTERIAL DIVERSITY IN URINE OF URETHRITIS PATIENTS AND HEALTHY CONTROLS USING 454 HIGH-THROUGHPUT-SEQUENCING 10.1136/SEXTRANS-2011-050108.526
PCR-denaturing Gradient Gel Electrophoresis and two feces antigen tests for detection of Helicobacter pylori in mice 10.1007/S0284-00395-X
[397] DETERMINATION OF YMDD VARIANTS OF HEPATITIS B VIRUS POLYMERASE GENE BY DENATURING GRADIENT GEL ELECTROPHORESIS (DGGE) - A NOVEL APPROACH TO DRUG RESISTANCE MONITORING 10.1016/S0168-8278(07)61995-3
Gene Expression Changes in Spleens and Livers of Tumour-Bearing Mice Suggest Delayed Inflammation and Attenuated Cachexia in Response to Oil Palm Phenolics 10.1159/000357948
Cardiac tissue engineering using perfusion bioreactor systems 10.1038/NPROT.2008.40
Field-assisted ionization of molecular doping in conjugated polymers 10.1016/J.ORGEL.2010.03.012
Programmed death-1 blockade enhances the antitumor effects of peptide vaccine-induced peptide-specific cytotoxic T lymphocytes 10.3892/IJO.2014.2737
Lars Hestbjerg Hansen
Hestbjerg Hansen Lars
ORCID: 0000-0003-0027-1524
Unlocking the Potential of 46 New Bacteriophages for Biocontrol of Dickeya Solani 10.3390/v10110621
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus Plantarum - A Novel Lineage of Lactobacillus Phages Comprising Five New Members 10.20944/preprints201812.0026.v1
Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet 10.3390/v11050435
Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas 10.1371/journal.pone.0083346
The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi 10.1534/g3.119.400085
Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages 10.3389/fmicb.2019.01783
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor 10.1016/S0378-1135(02)00029-9
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria 10.1016/j.ympev.2006.11.013
Genetic labelling and application of the isoproturonmineralizing Sphingomonas sp. strain SRS2 in soil and rhizosphere 10.1111/j.1472-765X.2006.01956.x
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae 10.1371/journal.pone.0041259
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community 10.1038/ismej.2014.191
High-resolution melt analysis for rapid comparison of bacterial community compositions 10.1128/AEM.03923-13
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine 10.1111/1574-6941.12189
Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis 10.1111/mec.12380
Host-specific and pH-dependent microbiomes of copepods in an extensive rearing system 10.1371/journal.pone.0132516
Multidonor FMT capsules improve symptoms and decrease fecal calprotectin in ulcerative colitis patients while treated - an open-label pilot study 10.1080/00365521.2019.1585939
The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs 10.1089/mdr.2005.11.378
Making bio-sense of toxicity: new developments in whole-cell biosencors 10.1016/j.copbio.2005.12.007
Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms 10.1128/AEM.03022-05
Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse 10.1371/journal.pone.0046231
Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques 10.1007/s00284-013-0382-x
The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice 10.14814/phy2.13881
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque 10.1016/j.jviromet.2013.10.040
Bioinformatic approaches reveal metagenomic characterization of soil microbial community 10.1371/journal.pone.0093445
Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer 10.1371/journal.pone.0162390
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam 10.1093/femsec/fiy214
A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions 10.1093/femsle/fnz101
A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation 10.1016/j.scitotenv.2019.133710
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution 10.1093/gbe/evz067
Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat 10.1128/AEM.01971-06.
Characterization of genetic determinants of extended-spectrum cephalosporinases (ESCs) in Escherichia coli isolates from Danish and imported poultry meat 10.1093/jac/dkp168
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing 10.1016/j.soilbio.2011.12.023
Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels 10.1016/j.plasmid.2016.10.001
Identifying the core microbial community in the gut of fungus-growing termites 10.1111/mec.12874
The effect of Lactobacillus paracasei subsp. paracasei L. casei W8® on blood levels of triacylglycerol is independent of colonisation 10.3920/BM2014.0033
Combined use of Bacteriophage K and a novel Bacteriophage to reduce Staphylococcus aureus biofilm formation 10.1128/AEM.01789-14
Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts 10.1111/mec.13216
Persistence Mechanisms of Conjugative Plasmids 10.1007/978-1-60327-853-9_5
All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant 10.1016/j.plasmid.2009.05.004
Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae 10.1016/j.plasmid.2012.03.001
Sequence and comparative analysis of Leuconostoc dairy bacteriophages 10.1016/j.ijfoodmicro.2014.01.019
Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene 10.1016/j.femsle.2005.09.034
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains 10.1099/mic.0.2007/010454-0
Fluoroquinolone resistance mechanisms in urinary tract pathogenic Escherichia coli isolated during rapidly increasing fluoroquinolone consumption in a low-use country 10.1089/mdr.2011.0015
Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse 10.1007/s00125-012-2564-7
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure 10.1128/AEM.01071-12
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods 10.1093/femsec/fiv157
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil 10.1016/j.soilbio.2011.06.019
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential 10.1007/s10482-011-9633-7
The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host 10.1111/1574-6968.12175
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year 10.1128/AEM.04016-13
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters 10.1128/AEM.71.5.2338-2346.2005
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments 10.1016/j.mrgentox.2005.11.008
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations 10.1111/j.1574-6968.2006.00536.x
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny 10.1128/AEM.00653-13
Large cryoconite aggregates on a Svalbard glacier support a diverse microbial community including ammonia-oxidizing archaea 10.1088/1748-9326/8/3/035044
Characterization of the gut microbiota in leptin deficient obese mice 10.1016/j.rvsc.2014.01.007
Predictors of neutrophilic airway inflammation in young smokers with asthma 10.3109/02770903.2014.880718
Mode of delivery shapes gut colonization pattern and modulates regulatory immunity in mice 10.4049/jimmunol.1400085
Establishment and early succession of a multispecies biofilm composed of soil bacteria 10.1007/s00248-007-9222-5
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria 10.1371/journal.pone.0019223
Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential 10.1128/AEM.00961-15
Characterization of IncN plasmids carrying blaCTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans 10.1093/jac/dks387
Current strategies for mobilome research 10.3389/fmicb.2014.00750
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0 10.1371/journal.pone.0019912
An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain 10.1371/journal.pone.0016193
Investigation of diversity of plasmids carrying the blaTEM-52 gene 10.1093/jac/dkr331
Fitness cost 10.1093/jac/dks051
Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes 10.1016/j.mimet.2013.09.016
Pathogens and host immunity in the ancient human oral cavity 10.1038/ng.2906
Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season 10.1016/j.envpol.2017.07.026
Plasmids, viruses, and other circular elements in rat gut 10.1101/143420
Natural hot spots for gain of multiple resistances 10.1128/AEM.03240-14
A maternal gluten-free diet reduces inflammation and diabetes incidence in the offspring of NOD mice 10.2337/db13-1612
Draft genome sequence of MCPA-degrading Sphingomonas sp. strain ERG5, isolated from a groundwater aquifer in Denmark 10.1128/genomeA.01529-14
Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition 10.1007/s00248-004-0113-8
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups 10.1016/j.plasmid.2006.11.007
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07 10.1111/j.1574-6941.2010.01024.x
Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing 10.1111/j.1469-0691.2012.03862.x
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing 10.1111/j.1574-6968.2012.02601.x
Complete nucleotide sequence of the self-transmissible TOL plasmid pD2RT provides new insight into arrangement of toluene catabolic plasmids 10.1016/j.plasmid.2013.09.003
Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1 10.1021/acs.est.5b02309
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment 10.1016/j.envint.2007.07.011
Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains 10.1007/978-1-60327-853-9_15
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients 10.1016/j.jgar.2016.03.001
The murine lung microbiome in relation to the intestinal and vaginal bacterial communities 10.1186/1471-2180-13-303
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux 10.1016/j.plasmid.2008.03.003
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities 10.1111/j.1365-2745.2011.01894.x
Complete genome sequence of Staphylococcus aureus strain M1, a unique t024-ST8-IVa Danish methicillin-resistant S. aureus clone 10.1128/genomeA.00336-13
Diverse gene functions in a soil mobilome 10.1016/j.soilbio.2016.07.018
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment 10.1007/s00248-015-0692-6
An improved method for including upper size range plasmids in metamobilomes 10.1371/journal.pone.0104405
The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria. 10.1016/j.mimet.2009.08.006
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms 10.3389/fpls.2019.00910
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum—A Novel Lineage of Lactobacillus Phages Comprising Five New Members 10.3390/v11070611
The genome and mRNA transcriptome of the cosmopolitan calanoid copepod Acartia tonsa Dana improve the understanding of copepod genome size evolution 10.1101/560102
Mouse vendor influence on the bacterial and viral gut composition exceeds the effect of diet 10.1101/588160
Faecal virome transplantation decrease symptoms of type-2-diabetes and obesity in a murine model 10.1101/792556
A Novel and Direct Metamobilome Approach improves the Detection of Larger-sized Circular Elements across Kingdoms 10.1101/761098
Unravelling plasmidome distribution and interaction with its hosting microbiome 10.1111/1462-2920.14813
Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp 10.1093/gbe/evz204
Isolation and complete genome sequencing of Pectobacterium phage Jarilo, representing a novel genus of bacteriophages within the subfamily Autographivirinae 10.1101/2020.01.16.909176
Genomic characterization of three novel Pseudomonas phages within the subfamily of Autographivirinae isolated from organic waste 10.1101/2020.01.20.910588
Fungicides and the Grapevine Wood Mycobiome 10.3389/fpls.2019.01405
Microbiota in foods from Inuit traditional hunting 10.1371/journal.pone.0227819
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms 10.1093/gigascience/giaa008
Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures 10.1111/acel.13105
Releasing the microbes from old bones 10.1080/20548923.2020.1738115
Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir) 10.1128/MRA.01139-19
Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2 10.1128/MRA.00531-19
Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses 10.4049/jimmunol.1901149
Degradation of mecoprop in polluted landfill leachate and waste water in a moving bed biofilm reactor 10.1016/j.watres.2017.05.031
Establishment of Bacterial Herbicide Degraders in a Rapid Sand Filter for Bioremediation of Phenoxypropionate-Polluted Groundwater 10.1128/AEM.02600-15
The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages 10.1038/s41598-017-13911-1
Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH 10.1093/gbe/evx185
Land use as a driver for protist community structure in soils under agricultural use across Europe 10.1016/j.scitotenv.2020.137228
Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples 10.1038/s41598-018-24082-y
Draft Genome Sequence of Isoproturon-Mineralizing Sphingomonas sp. SRS2, Isolated from an Agricultural Field in the United Kingdom 10.1128/genomeA.00569-15
Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats 10.1016/j.foodchem.2020.127291
Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina 10.1016/j.syapm.2019.126044
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function 10.1093/gigascience/giaa053
Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom 10.1128/MRA.01064-19
Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios 10.1186/s40168-020-00822-z
Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus" 10.1038/s41598-020-65366-6
Under the Christmas Tree 10.3389/fmicb.2020.00198
Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology 10.1038/s41598-020-68389-1
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment 10.3390/v12090986
Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model 10.1136/gutjnl-2019-320005
Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier 10.1128/mBio.02641-20
Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community 10.1371/journal.pone.0240512
Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs 10.1093/nar/gkaa735
Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae 10.1007/s00705-020-04905-y
Mobilization of antibiotic resistance genes differ by resistance mechanism 10.1101/2021.01.10.426126
Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina 10.1371/journal.pone.0243848
Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms 10.1016/j.scitotenv.2020.143281
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil 10.1038/s41598-020-80732-0
The gut microbiome and abiotic factors as potential determinants of postprandial glucose responses: A single-arm meal study 10.3389/fnut.2020.594850
Pre-clinical evaluation of the effect of co-medication with antibiotics and oral steroids in Gottingen Minipigs on the biological activity of the probiotic medicinal product TSO (Trichuris suis ova) 10.1007/s00436-020-07004-8
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress 10.1093/femsec/fiaa235
Epigenetic Memories 10.1016/j.tim.2020.12.005
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms 10.1016/j.plasmid.2021.102576
Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae 10.1089/phage.2020.0037
Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments 10.1038/s41598-019-56741-z
Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae 10.1089/phage.2020.0039
A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus 10.1089/phage.2020.0038
The aerobiome uncovered 10.1016/j.envint.2021.106551
A New High-Throughput Screening Method for Phages 10.1089/phage.2020.0016
Presentation of Three Novel Tailed Phages Targeting Multiple Strains of Pseudomonas syringae 10.1089/phage.2020.0040
Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis 10.1111/1758-2229.12939
Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay 10.3390/v13060959
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms 10.1080/19490976.2021.1927635
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community 10.3389/fmicb.2021.655903
Bioaugmented Sand Filter Columns Provide Stable Removal of Pesticide Residue From Membrane Retentate 10.3389/frwa.2020.603567
Extension of Plant Phenotypes by the Foliar Microbiome 10.1146/annurev-arplant-080620-114342
Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18 10.1128/MRA.00601-21
The effect of faecal microbiota transplantation on abdominal pain, stool frequency, and stool form in patients with moderate-to-severe irritable bowel syndrome 10.1080/00365521.2021.1915375
Gut microbiome and its cofactors are linked to lipoprotein distribution profiles 10.1101/2021.09.01.458531
Lasse Bergmark
Bergmark Lasse
ORCID: 0000-0003-3677-5812
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing 10.1111/j.1574-6968.2012.02601.x
Investigating the Diversity of Pseudomonas spp. in Soil Using Culture Dependent and Independent Techniques 10.1007/s00284-013-0382-x
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing 10.1016/j.soilbio.2011.12.023
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Soil microorganisms respond to five years of climate change manipulations and elevated atmospheric CO2 in a temperate heath ecosystem 10.1007/s11104-013-1855-1
High-Throughput Screening of Multispecies Biofilm Formation and Quantitative PCR-Based Assessment of Individual Species Proportions, Useful for Exploring Interspecific Bacterial Interactions 10.1007/s00248-013-0315-z
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance 10.1038/srep11444
Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition 10.1128/mSystems.00095-16
Søren Sørensen
Sørensen Søren / Søren Johannes Sørensen
ORCID: 0000-0001-6227-9906
Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer 10.1371/journal.pone.0162390
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients 10.1016/j.jgar.2016.03.001
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies 10.1093/femsec/fiw087
Metagenomes provide valuable comparative information on soil microeukaryotes 10.1016/j.resmic.2016.03.003
High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples 10.1017/S2040174415001506
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases 10.1111/1751-7915.12343
Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark 10.1128/genomeA.00076-16
Genome sequence of Kocuria palustris strain W4 10.1128/genomeA.00074-16
Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse 10.1128/genomeA.00073-16
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods 10.1093/femsec/fiv157
Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark 10.1128/genomeA.00075-16
Draft genome assembly of two Pseudoclavibacter helvolus strains, G8 and W3, isolated from slaughterhouse environments 10.1128/genomeA.00077-16
Diverse gene functions in a soil mobilome 10.1016/j.soilbio.2016.07.018
Coping with copper 10.1093/femsec/fiw175
Coexistence facilitates interspecific biofilm formation in complex microbial communities 10.1111/1462-2920.13335
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment 10.1007/s00248-015-0692-6
Back to the future of soil metagenomics 10.3389/fmicb.2016.00073
Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission 10.1111/1462-2920.12827
Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming 10.1016/j.soilbio.2015.06.027
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law 10.1002/biot.201400537
Natural hot spots for gain of multiple resistances 10.1128/AEM.03240-14
Microbial diversity in a permanently cold and alkaline environment in Greenland 10.1371/journal.pone.0124863
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques 10.1016/j.ijfoodmicro.2015.09.012
Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere 10.1007/s00374-015-1045-9
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment 10.1016/j.fm.2015.04.008
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment 10.1111/1462-2920.12539
Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1 10.1021/acs.est.5b02309
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation 10.1038/ismej.2014.96
Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models 10.1128/AEM.02628-15
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments 10.1128/genomeA.00585-15
Current strategies for mobilome research 10.3389/fmicb.2014.00750
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community 10.1038/ismej.2014.191
Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts 10.1111/mec.13216
Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential 10.1128/AEM.00961-15
The microbiome of New World vultures 10.1038/ncomms6498
The giraffe (Giraffa camelopardalis) rumen microbiome 10.1111/1574-6941.12402
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids 10.1111/1574-6941.12397
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year 10.1128/AEM.04016-13
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal 10.1111/1751-7915.12079
Sequence and comparative analysis of Leuconostoc dairy bacteriophages 10.1016/j.ijfoodmicro.2014.01.019
Rapid TaqMan-based quantification of Chlorophyll d-containing Cyanobacteria in the Genus Acaryochloris 10.1128/AEM.00334-14
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts 10.1111/jam.12584
Metabolic variability in bioprocessing 10.1016/j.tibtech.2014.10.002
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine 10.1111/1574-6941.12189
Loss of microbial diversity in soils is coincident with reductions in some specialized functions 10.1111/1462-2920.12353
Identifying the core microbial community in the gut of fungus-growing termites 10.1111/mec.12874
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes 10.1038/nbt.2939
Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome 10.1371/journal.pone.0087924
Host-specific microbial communities in three sympatric North Sea sponges 10.1111/1574-6941.12400
High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions 10.1007/s00248-013-0315-z
Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures 10.1128/genomeA.00484-14
Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter 10.1128/genomeA.00485-14
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Draft genome sequence of Burkholderia sordidicola S170, a potential plant growth promoter isolated from coniferous forest soil in the Czech Republic 10.1128/genomeA.00810-14
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque 10.1016/j.jviromet.2013.10.040
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species 10.1128/genomeA.00265-14
Characterization of the gut microbiota in leptin deficient obese mice 10.1016/j.rvsc.2014.01.007
Bioinformatic approaches reveal metagenomic characterization of soil microbial community 10.1371/journal.pone.0093445
An improved method for including upper size range plasmids in metamobilomes 10.1371/journal.pone.0104405
The murine lung microbiome in relation to the intestinal and vaginal bacterial communities 10.1186/1471-2180-13-303
The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host 10.1111/1574-6968.12175
The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains 10.1111/1574-6968.12036
Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis 10.1111/mec.12380
Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes 10.1016/j.mimet.2013.09.016
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations 10.1007/s00248-012-0112-0
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny 10.1128/AEM.00653-13
Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques 10.1007/s00284-013-0382-x
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing 10.1016/j.soilbio.2011.12.023
Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors 10.1002/btpr.1694
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes 10.1371/journal.pone.0068484
Cell mass and cell cycle dynamics of an asynchronous budding yeast population 10.1002/bit.24749
Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation 10.3402/polar.v32i0.17390
Bacterial chitinolytic communities respond to chitin and pH alteration in soil 10.1128/AEM.02546-12
Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments 10.1128/AEM.02920-12
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures 10.1002/bit.25109
A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors 10.1186/1475-2859-12-100
454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters 10.1111/1574-6941.12148
The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors 10.1016/j.ijfoodmicro.2011.05.012
The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR 10.1016/j.ijfoodmicro.2011.11.014
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae 10.1371/journal.pone.0041259
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure 10.1128/AEM.01071-12
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing 10.1016/j.jbiotec.2012.01.020
Physiological heterogeneities in microbial populations and implications for physical stress tolerance 10.1186/1475-2859-11-94
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics 10.1007/s00253-012-4057-5
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella 10.1038/ismej.2011.181
Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing 10.1111/j.1469-0691.2012.03862.x
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential 10.1007/s10482-011-9633-7
Heterogeneity in recombinant protein production 10.1016/j.nbt.2012.08.217
Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse 10.1371/journal.pone.0046231
Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse 10.1007/s00125-012-2564-7
Draft Genome Sequence of the Soil Bacterium Burkholderia terrae Strain BS001, Which Interacts with Fungal Surface Structures 10.1128/JB.00725-12
Culture-dependent and -independent investigations of microbial diversity on urinary catheters 10.1128/JCM.01237-12
Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina 10.1128/AEM.00397-12
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing 10.1111/j.1574-6968.2012.02601.x
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities 10.1111/j.1365-2745.2011.01894.x
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil 10.1016/j.soilbio.2011.06.019
Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools 10.5772/20088
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0 10.1371/journal.pone.0019912
Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic 10.1111/j.1574-6941.2010.01016.x
Quantitative metagenomic analyses based on average genome size normalization 10.1128/AEM.02167-10
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07 10.1111/j.1574-6941.2010.01024.x
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria 10.1371/journal.pone.0019223
Investigation of diversity of plasmids carrying the blaTEM-52 gene 10.1093/jac/dkr331
Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect 10.1002/biot.201000410
Experimental methods and modeling techniques for description of cell population heterogeneity 10.1016/j.biotechadv.2011.03.007
Endolithic chlorophyll d-containing phototrophs 10.1038/ismej.2010.195
Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing 10.1016/j.idairyj.2010.10.007
Biofilms in soil 10.1007/978-90-481-3585-1
An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain 10.1371/journal.pone.0016193
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults 10.1371/journal.pone.0009085
The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria 10.1016/j.mimet.2009.08.006
Persistence Mechanisms of Conjugative Plasmids 10.1007/978-1-60327-853-9_5
Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains 10.1007/978-1-60327-853-9_15
All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant 10.1016/j.plasmid.2009.05.004
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains 10.1099/mic.0.2007/010454-0
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux 10.1016/j.plasmid.2008.03.003
Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences 10.1128/AEM.00049-08
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment 10.1016/j.envint.2007.07.011
Acclimation of subsurface microbial communities to mercury 10.1111/j.1574-6941.2008.00501.x
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups 10.1016/j.plasmid.2006.11.007
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria 10.1016/j.ympev.2006.11.013
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations 10.1111/j.1574-6968.2006.00536.x
Establishment and early succession of a multispecies biofilm composed of soil bacteria 10.1007/s00248-007-9222-5
Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat 10.1128/AEM.01971-06.
Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp. 10.1016/j.envpol.2005.11.047
Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil 10.1111/j.1462-2920.2005.00935.x
Making bio-sense of toxicity: new developments in whole-cell biosencors 10.1016/j.copbio.2005.12.007
Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms 10.1128/AEM.03022-05
Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site 10.1021/es060008u
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments 10.1016/j.mrgentox.2005.11.008
Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition 10.1007/s00248-004-0113-8
The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs 10.1089/mdr.2005.11.378
Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene 10.1016/j.femsle.2005.09.034
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters 10.1128/AEM.71.5.2338-2346.2005
The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum) 10.1016/S0038-0717(03)00214-1
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor 10.1016/S0378-1135(02)00029-9
The Effect of Long Term Mercury Pollution on the Soil Microbial Community 10.1111/j.1574-6941.2001.tb00821.x
An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities 10.1016/S0038-0717(01)00094-3
Application of a mer-lux biosensor for estimating bioavailable mercury in soil 10.1016/S0038-0717(99)00190-X
A new method for determining the metabolic activity of specific bacterial populations in soil using tritiated leucine and immunomagnetic separation 10.1007/s003740000236
Antagonism correlates with metabolic similarity in diverse bacteria 10.1073/pnas.1706016114
Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities 10.1128/AEM.02755-17
Fluorescence Recovery Allows the Implementation of a Fluorescence Reporter Gene Platform Applicable for the Detection and Quantification of Horizontal Gene Transfer in Anoxic Environments 10.1128/AEM.02507-17
Deep mutational scanning by FACS-sorting of encapsulated E. coli micro-colonies 10.1101/274753
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm 10.1038/s41396-018-0112-2
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer 10.1038/s41396-018-0183-0
Enhanced bacterial mutualism through an evolved biofilm phenotype 10.1038/s41396-018-0165-2
Impact of long-term agricultural management practices on soil prokaryotic communities 10.1016/j.soilbio.2018.11.002
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli 10.1128/AAC.02528-18
It is elemental: soil nutrient stoichiometry drives bacterial diversity 10.1111/1462-2920.13642
Direct detection and quantification of horizontal gene transfer by using flow cytometry and gfp as a reporter gene 10.1007/s00284-002-3978-0
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures 10.1002/bit.25204
High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA) 10.1038/ismej.2007.56
Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium 10.3389/fmicb.2017.00357
The cda GenoTox assay: A new and sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines 10.1016/j.mrgentox.2007.02.011
Conjugative plasmids: Vessels of the communal gene pool 10.1098/rstb.2009.0037
Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation 10.1038/ismej.2016.107
Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome 10.1093/femsec/fiy193
Microbiomes associated with infective stages of root-knot and lesion nematodes in soil 10.1371/journal.pone.0177145
Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil 10.1016/S0168-6496(01)00111-8
Stability and resilience of the intestinal microbiota in children in daycare - A 12 month cohort study 10.1186/s12866-018-1367-5
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches 10.1016/j.ijfoodmicro.2018.02.012
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies 10.1186/s40168-016-0208-8
Detection and quantification of tetracyclines by whole cell biosensors 10.1016/S0378-1097(00)00347-5
Metagenomic analysis of dairy bacteriophages: Extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures 10.1128/AEM.00888-17
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period 10.1371/journal.pone.0187858
Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere 10.1016/S0168-6496(99)00079-3
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities 10.1016/j.mimet.2018.07.009
Effects of tylosin as a disturbance on the soil microbial community 10.1016/S0038-0717(01)00134-1
Recovery of GFP-labeled bacteria for culturing and molecular analysis after cell sorting using a benchtop flow cytometer 10.1007/s00248-003-1069-9
Adaptation of the bacterial community to mercury contamination 10.1016/S0378-1097(01)00376-7
Detection of oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry 10.1128/AEM.67.1.239-244.2001
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives 10.1016/j.plasmid.2018.08.002
The diversity and function of soil microbial communities exposed to different disturbances 10.1007/s00248-001-0042-8
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium 10.1038/ismej.2015.14
Methods for detection of conjugative plasmid transfer in aquatic environments 10.1007/s002849900378
Survival of Escherichia coli K12 in seawater 10.1111/j.1574-6968.1991.tb04708.x-i1
Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry 10.1016/S0378-1097(04)00015-1
Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization 10.3389/fmicb.2016.01366
Microbial indicators for soil quality 10.1007/s00374-017-1248-3
Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions 10.1073/pnas.1804850115
Utilization of phenoxyacetic acid, by strains using either the ortho or meta cleavage of catechol during phenol degradation, after conjugal transfer of tfdA, the gene encoding a 2,4-dichlorophenoxyacetic acid/2-oxoglutarate dioxygenase 10.1007/s002530051383
Survival of Escherichia coli K12 in seawater 10.1016/0378-1097(91)90512-9
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters 10.1038/ismej.2016.16
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages 10.1186/s40168-018-0606-1
Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D 10.1016/j.heliyon.2017.e00262
The effect of longterm exposure to mercury on the bacterial community in marine sediment 10.1007/s002849900312
Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels 10.1016/j.plasmid.2016.10.001
Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization 10.1093/femsec/fiy027
The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia Coli and Pseudomonas fluorescens 10.1007/s002849900320
The effect of long-term mercury pollution on the soil microbial community 10.1016/S0168-6496(01)00112-X
Plasmid-encoded multidrug efflux pump conferring resistance to olaquindox in Escherichia coli 10.1128/AAC.48.9.3332-3337.2004
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome 10.1016/j.jhazmat.2017.09.046
Studying plasmid horizontal transfer in situ: A critical review 10.1038/nrmicro1232
Erratum: Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood (Nature communications (2018) 9 1 (141)) 10.1038/s41467-018-03150-x
Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner 10.1186/s12931-016-0435-3
A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media 10.1080/1040841X.2016.1252312
The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems 10.1007/s00248-001-0025-9
Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats 10.1128/AEM.70.2.758-764.2004
The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review 10.1071/EN11140
The interconnection between biofilm formation and horizontal gene transfer 10.1111/j.1574-695X.2012.00960.x
Synergistic interactions within a multispecies biofilm enhance individual species protection against grazing by a pelagic protozoan 10.3389/fmicb.2017.02649
Presence of N-acyl homoserine lactones in soil detected by a whole-cell biosensor and flow cytometry 10.1007/s00248-002-2028-6
Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community 10.1021/acs.estlett.8b00105
Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software 10.1038/nmeth.4458
Effects of soil pre-treatment with Basamid® granules, Brassica juncea, Raphanus sativus, and tagetes patula on bacterial and fungal communities at two apple replant disease sites 10.3389/fmicb.2017.01604
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass 10.1016/j.ijfoodmicro.2019.02.003
Erratum: The microbiome of New World vultures (Nature Communications (2014) 5 (5498) DOI:10.1038/ncomms6498) 10.1038/ncomms9774
Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere 10.1128/AEM.00013-06
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites 10.1016/j.envint.2019.02.048
How Microbial Aggregates Protect against Nanoparticle Toxicity 10.1016/j.tibtech.2018.06.009
Use of a PNA probe to block DNA-mediated PCR product formation in prokaryotic RT-PCR 10.2144/000112437
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
Genome sequence of Psychrobacter cibarius strain W1 10.1128/genomeA.00078-16
Effect of root exudates and bacterial metabolic activity on conjugal gene transfer in the rhizosphere of a marsh plant 10.1016/S0168-6496(98)00007-5
Investigation of diversity of plasmids carrying the bla TEM-52 gene 10.1093/jac/dkr559
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam 10.1093/femsec/fiy214
Synergistic interactions in microbial biofilms facilitate the establishment of opportunistic pathogenic fungi in household dishwashers 10.3389/fmicb.2018.00021
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community 10.1038/s41598-017-16633-6
Enhanced degradation of phenoxyacetic acid in soil by horizontal transfer of the tfdA gene encoding a 2,4-dichlorophenoxyacetic acid dioxygenase 10.1016/S0168-6496(00)00113-6
The bacterial microbiota in first-void urine from men with and without idiopathic urethritis 10.1371/journal.pone.0201380
Nutrient fortification of human donor milk affects intestinal function and protein metabolism in preterm pigs 10.1093/jn/nxx033
Deciphering conjugative plasmid permissiveness in wastewater microbiomes 10.1111/mec.14138
Effect of genomic location on horizontal transfer of a recombinant gene cassette between Pseudomonas strains in the rhizosphere and spermosphere of barley seedlings 10.1007/s002840010197
A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil 10.1371/journal.pone.0187116
Conjugative plasmid conferring resistance to olaquindox 10.1128/AAC.47.2.798-799.2003
Biofilms in chronic infections - A matter of opportunity - Monospecies biofilms in multispecies infections 10.1111/j.1574-695X.2010.00714.x
Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system 10.1016/S0378-1119(96)00688-9
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: A double-blind, randomized, placebo-controlled trial 10.1016/j.ebiom.2018.11.035
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina 10.1038/ismej.2017.192
Survival of Escherichia coli K12 in seawater 10.1111/j.1574-6941.1991.tb01720.x
Versatile biosensor vectors for detection and quantification of mercury 10.1016/S0378-1097(00)00462-6
Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner 10.1038/ismej.2016.98
Erratum: Group-specific PCR primers to amplify 24S a-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis (Microbial Ecology 42 (109-000)) 10.1007/s00248-001-0019-7
Bacterial social interactions and the emergence of community-intrinsic properties 10.1016/j.mib.2017.11.018
Soil bacteria show different tolerance ranges to an unprecedented disturbance 10.1007/s00374-017-1255-4
The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures 10.1002/btpr.2796
Genetic barcoding of dark-spored myxomycetes (Amoebozoa)—Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies 10.1111/1755-0998.12725
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria 10.1093/jac/dkm167
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps 10.1007/s00248-019-01347-1
Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity 10.1016/j.biortech.2018.09.006
Coping with copper: Legacy effect of copper on potential activity of soil bacteria following a century of exposure 10.1093/femsec/iw175
Free-living nematodes together with associated microbes play an essential role in apple replant disease 10.3389/fpls.2018.01666
In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine 10.1128/AAC.48.4.1112-1117.2004
Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora 10.1128/genomeA.00026-17
The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants 10.1016/j.anbehav.2018.12.017
The developing hypopharyngeal microbiota in early life 10.1186/s40168-016-0215-9
Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation 10.1111/1462-2920.13816
Studying Bacterial Multispecies Biofilms: Where to Start? 10.1016/j.tim.2016.02.019
Ecosystem response of pasture soil communities to fumigation-induced microbial diversity reductions: An examination of the biodiversity-ecosystem function relationship 10.1034/j.1600-0706.2000.900208.x
Conjugal transfer at natural population densities in a microcosm simulating an estuarine environment 10.1016/0168-6496(94)00068-8
Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis 10.1016/j.soilbio.2004.03.011
Autogenic succession and deterministic recovery following disturbance in soil bacterial communities 10.1038/srep45691
Rifaximin has minor effects on bacterial composition, inflammation, and bacterial translocation in cirrhosis: A randomized trial 10.1111/jgh.13852
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows 10.3168/jds.2017-14366
Transfer of plasmid RP4 in the spermosphere and rhizosphere of barley seedling 10.1023/A:1000661115753
Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season 10.1016/j.envpol.2017.07.026
Interactions in multispecies biofilms: Do they actually matter? 10.1016/j.tim.2013.12.004
Inducible gene expression by nonculturable bacteria in milk after pasteurization 10.1128/AEM.68.4.1988-1993.2002
Legacy effects on the recovery of soil bacterial communities from extreme temperature perturbation 10.3389/fmicb.2017.01832
Construction of simplified microbial consortia to degrade recalcitrant materials based on enrichment and dilution-to-extinction cultures 10.1101/670133
Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems 10.1016/j.scitotenv.2019.07.087
The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits 10.1016/j.funeco.2019.05.006
Effects of long-term warming and enhanced nitrogen and sulfur deposition on microbial communities in a boreal peatland 10.1101/704411
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing 10.1038/s42003-019-0540-1
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms 10.1038/s41396-019-0494-9
Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments 10.1016/j.jhazmat.2019.121173
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids 10.1101/780106
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma 10.1038/s41467-019-12989-7
DNA- and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters 10.1128/mBio.01870-19
Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids 10.1093/nar/gkz1197
Community-intrinsic properties enhance keratin degradation from bacterial consortia 10.1371/journal.pone.0228108
Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes 10.1038/s41396-020-0596-4
Stability of the vaginal microbiota during pregnancy and its importance for early infant colonization 10.1101/2020.04.16.044255
CRISPRCasTyper: An automated tool for the identification, annotation and classification of CRISPR-Cas loci 10.1101/2020.05.15.097824
Discovery of multiple anti-CRISPRs uncovers anti-defense gene clustering in mobile genetic elements 10.1101/2020.05.22.110304
Adaptive evolution of phenotypic switching during environmental change 10.1101/2020.06.02.127241
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota 10.21203/rs.3.rs-40340/v1
Compatibility of X-ray computed tomography with plant gene expression, rhizosphere bacterial communities and enzyme activities 10.1093/jxb/eraa262
The microbiome of captive hamadryas baboons 10.1186/s42523-020-00040-w
Composted Sewage Sludge Influences the Microbiome and Persistence of Human Pathogens in Soil 10.3390/microorganisms8071020
The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity 10.1038/s41396-020-00751-7
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination 10.1093/femsec/fiaa200
Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design 10.1093/femsec/fiaa211
Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements 10.1038/s41467-020-19415-3
Persistence and progression of staphylococcal infection in the presence of public goods 10.1038/s41522-020-00168-2
Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas 10.1093/femsec/fiab007
Modeling transfer of vaginal microbiota from mother to infant in early life 10.7554/eLife.57051
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs 10.1101/2021.01.26.428250
Tillage shapes the soil and rhizosphere microbiome of barley—but not its susceptibility towards Blumeria graminis f. sp. hordei 10.1093/femsec/fiab018
Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems 10.1093/femsec/fiab023
Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories 10.1093/femsec/fiab027
Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis 10.1093/femsec/fiab031
Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture 10.3390/microorganisms9020426
Comparative genomics analysis of Chryseobacterium sp. KMC2 reveals metabolic pathways involved in keratinous utilization and natural product biosynthesis 10.1101/2021.02.23.432615
Temporal oral microbiome changes with brushing in children with cleft lip and palate 10.1016/j.heliyon.2021.e06513
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids 10.1101/2021.06.04.447074
Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis 10.1038/s41467-021-23685-w
The effect of early probiotic exposure on the preterm infant gut microbiome development 10.1080/19490976.2021.1951113
Jakob Magid
Magid Jakob
ORCID: 0000-0001-5867-0910
Biological 12C-13C fractionation increases with increasing community-complexity in soil microcosms 10.1016/j.soilbio.2013.10.030
Effects of fertilization with urban and agricultural organic wastes in a field trial - Prokaryotic diversity investigated by pyrosequencing 10.1016/j.soilbio.2011.12.023
Effects of fertilization with urban and agricultural organic wastes in a field trial - Waste imprint on soil microbial activity 10.1016/j.soilbio.2012.02.031
Improved sampling methods document decline in soil organic carbon stocks and concentrations of permanganate oxidizable carbon after transition from swidden to oil palm cultivation 10.1016/j.agee.2013.06.018
Investigating the Diversity of Pseudomonas spp. in Soil Using Culture Dependent and Independent Techniques 10.1007/s00284-013-0382-x
Planning the unplanned 10.1177/0956247813500903
Relation between soil P test values and mobilization of dissolved and particulate P from the plough layer of typical Danish soils from a long-term field experiment with applied P fertilizers 10.1111/sum.12060
The role of local government in promoting sustainable urban agriculture in Dar es Salaam and Copenhagen 10.1080/00167223.2013.848612
Assessment of existing roadside swales with engineered filter soil 10.2134/jeq2011.0318
Assessment of Existing Roadside Swales with Engineered Filter Soil: II. Treatment Efficiency and in situ Mobilization in Soil Columns 10.2134/jeq2012.0116
Characterization of Leached Phosphorus from Soil, Manure, and Manure-Amended Soil by Physical and Chemical Fractionation and Diffusive Gradients in Thin Films (DGT) 10.1021/es301861a
Cultivar variation and selection potential relevant to the production of cellulosic ethanol from wheat straw 10.1016/j.biombioe.2011.12.009
Economic, environmental and socio-cultural sustainability of three constructed wetlands in Thailand 10.1177/0956247811434259
A Minimum Data Set of Water Quality Parameters to Assess and Compare Treatment Efficiency of Stormwater Facilities 10.2134/jeq2010.0420
Carbon, Nitrogen, and Phosphorus Distribution in Particle Size-Fractionated Separated Pig and Cattle Slurry 10.2134/jeq2010.0217
Contrasting effects of nitrogen limitation and amino acid imbalance on carbon and nitrogen turnover in three species of Collembola 10.1016/j.soilbio.2010.12.008
Effect of irrigation regimes on mobilization of nonreactive tracers and dissolved and particulate phosphorus in slurry-injected soils 10.1029/2011wr010769
Formation and remobilisation of soil microbial residue 10.1007/s00374-011-0592-y
Phosphorus bioavailability in ash from straw and sewage sludge processed by low-temperature biomass gasification 10.1111/sum.12399
Genetic variation in degradability of wheat straw and potential for improvement through plant breeding 10.1016/j.biombioe.2010.11.036
Interactions between soil texture and placement of dairy slurry application 10.2134/jeq2010.0317
The implications of phasing out conventional nutrient supply in organic agriculture 10.1007/s13165-013-0045-z
Interactions between soil texture and placement of dairy slurry application 10.2134/jeq2010.0318
Cellulosic ethanol 10.1186/1754-6834-3-25
Doing the first loop of planning for sustainable urban drainage system retrofits 10.1080/1573062x.2010.527352
Near Infrared Spectroscopy as a Screening Tool for Sugar Release and Chemical Composition of Wheat Straw 10.1166/jbmb.2010.1104
Organic matter in size-density fractions after 16-50 years of grass ley, cereal cropping and organic amendments 10.1111/j.1365-2389.2010.01247.x
Phosphorus Distribution in Untreated and Composted Solid Fractions from Slurry Separation 10.2134/jeq2009.0168
Prediction of the degradability and ash content of wheat straw from different cultivars using near infrared spectroscopy 10.1016/j.indcrop.2009.11.011
Limitations of xylanase assays in plant material and organic-matter-rich soils 10.1111/j.1365-2389.2009.01137.x
Relating soil carbon fractions to land use in sloping uplands in northern Thailand 10.1016/j.agee.2009.01.013
Thinking Outside the Box: Interdisciplinary Integration of Teaching and Research on an Environment and Development Study Programme 10.1179/030801809x12529269201165
Tissue architecture and soil fertility controls on decomposer communities and decomposition of roots 10.1016/j.soilbio.2009.01.023
A fresh look at shifting cultivation 10.1016/j.agsy.2007.06.002
Determination of a relationship between chitinase activity and microbial diversity in chitin amended compost 10.1016/j.biortech.2007.08.042
Re-examining the glomalin-purity of glomalin-related soil protein fractions through immunochemical, lectin-affinity and soil labelling experiments 10.1016/j.soilbio.2007.10.019
Soil erosion from shifting cultivation and other smallholder land use in Sarawak, Malaysia 10.1016/j.agee.2007.12.013
Visions of a more precise soil biology 10.1111/j.1365-2389.2008.01018.x
Assimilation dynamics of soil carbon and nitrogen by wheat roots and Collembola 10.1007/s11104-007-9280-y
Modelling C and N mineralization during decomposition of anaerobically digested and composted municipal solid waste 10.1177/0734242x07076419
Properties of anaerobically digested and composted municipal solid waste assessed by linking soil mesofauna dynamics and nitrogen modelling 10.1007/s00374-007-0178-x
Temporal and spatial trends in soil organic carbon stocks following maize cultivation in semi-arid Tanzania, East Africa 10.1007/s10705-007-9116-4
A nitrogen mineralization model based on relationships for gross mineralization and immobilization 10.1016/j.soilbio.2006.04.023
Application of processed organic municipal solid waste on agricultural land - a scenario analysis 10.1007/s10666-005-9028-0
Catch crops affect nitrogen dynamics in organic fanning systems without livestock husbandry - Simulations with the DAISY model 10.1016/j.ecolmodel.2005.05.026
Heterogeneous distribution may substantially decrease initial decomposition, long-term microbial growth and N-immobilization from high C-to-N ratio resources 10.1111/j.1365-2389.2006.00805.x
Possibilities and barriers for recirculation of nutrients and organic matter from urban to rural areas: A technical theoretical framework applied to the medium-sized town Hillerod, Denmark 10.1016/j.ecoleng.2006.03.009
Structural changes of plant residues during decomposition in a compost environment 10.1016/j.biortech.2005.05.003
Taking stock of the Brazilian "zero-till revolution": A review of landmark research and farmers' practice 10.1016/s0065-2113(06)91002-5
C-13 signature of CO2 evolved from incubated maize residues and maize-derived sheep faeces 10.1016/j.soilbio.2003.07.002
Decomposition of plant residues at low temperatures separates turnover of nitrogen and energy rich tissue components in time 10.1023/B:PLSO.0000016565.14718.4b
Assessment on organic farming benchmark trials in Denmark 10.1080/09064710310002421
Calibration and validation of the soil organic matter dynamics of the Daisy model with data from the Askov long-term experiments 10.1016/s0038-0717(02)00237-7
Catch crops and green manures as biological tools in nitrogen management in temperate zones 10.1016/s0065-2113(02)79005-6
Decomposition of plant residues of different quality in soil - DAISY model calibration and simulation based on experimental data 10.1016/s0304-3800(03)00114-5
Decomposition of white clover (Trifolium repens) and ryegrass (Lolium perenne) components: C and N dynamics simulated with the DAISY soil organic matter submodel 10.1016/s1161-0301(01)00118-6
Dynamics of invertase, xylanase and coupled quality indices of decomposing green and brown plant residues 10.1016/s0038-0717(01)00208-5
Phosphate sorption to macropore wall materials and bulk soil 10.1023/a:1015589011729
Short and medium term plant litter decomposition in a tropical Ultisol elucidated by physical fractionation in a dual C-13 and C-14 isotope study 10.1016/s0038-0717(02)00069-x
Disproportionately high N-mineralisation rates from green manures at low temperatures - implications for modeling and management in cool temperate agro-ecosystems 10.1023/a:1004860329146
Influence of the rhizosphere on microbial biomass and recently formed organic matter 10.1046/j.1365-2389.2001.00393.x
Recovering decomposing plant residues from the particulate soil organic matter fraction: size versus density separation 10.1007/s003740000316
Soil organic matter decline and compositional change associated with cereal cropping in southern Tanzania 10.1002/ldr.419
A note on the description of the kinetics of phosphate sorption 10.1111/j.1365-2389.2000.00332.x
Nitrogen mineralization from sheep faeces can be predicted from the apparent digestibility of the feed 10.1023/a:1009874500769
Drying and rewetting of a loamy sand soil did not increase the turnover of native organic matter, but retarded the decomposition of added C-14-labelled plant material 10.1016/s0038-0717(98)00164-3
Empirical modelling of the kinetics of phosphate sorption to macropore materials in aggregated subsoils 10.1046/j.1365-2389.1999.00235.x
Phosphate sorption to matrix and fracture wall materials in a Glossaqualf 10.1016/s0016-7061(98)00126-8
Xylanase, invertase and protease at the soil-litter interface of a loamy sand 10.1016/s0038-0717(99)00035-8
A field study of nitrogen dynamics and spring barley growth as affected by the quality of incorporated residues from white clover and ryegrass 10.1023/a:1004350215467
Energetic, economic and ecological balances of a combined food and energy system 10.1016/s0961-9534(98)00047-6
Phosphate mobilization and immobilization in two soils incubated under simulated reducing conditions 10.1080/09064719809362473
Soil C and N turnover after incorporation of chopped maize, barley straw and blue grass in the field: Evaluation of the DAISY soil-organic-matter submodel 10.1016/s0304-3800(98)00094-5
Turnover of carbon and nitrogen in a sandy loam soil following incorporation of chopped maize plants, barley straw and blue grass in the field 10.1016/s0038-0717(97)00178-8
Size-density fractionation for in situ measurements of rape straw decomposition - An alternative to the litterbag approach? 10.1016/s0038-0717(96)00306-9
Temporal variation of C and N mineralization, microbial biomass and extractable organic pools in soil after oilseed rape straw incorporation in the field 10.1016/s0038-0717(97)00014-x
Temporal variation of C and N turnover in soil after oilseed rape straw incorporation in the field: Simulations with the soil-plant-atmosphere model DAISY 10.1016/s0304-3800(97)01959-5
In search of the elusive ''active'' fraction of soil organic matter: Three size-density fractionation methods for tracing the fate of homogeneously C-14-labelled plant materials 10.1016/0038-0717(95)00111-5
Soil surface CO2 flux as an index of soil respiration in situ: A comparison of two chamber methods 10.1016/s0038-0717(96)00136-8
P DEPLETION AND ACTIVITY OF PHOSPHATASES IN THE RHIZOSPHERE OF MYCORRHIZAL AND NONMYCORRHIZAL CUCUMBER (CUCUMIS-SATIVUS L) 10.1016/0038-0717(95)00046-h
VEGETATION EFFECTS ON SOIL SOLUTION COMPOSITION AND EVAPOTRANSPIRATION - POTENTIAL IMPACTS OF SET-ASIDE POLICIES 10.1016/0167-8809(94)90056-6
VEGETATION EFFECTS ON PHOSPHORUS FRACTIONS IN SET-ASIDE SOILS 10.1007/bf00010768
SEASONAL-VARIATION IN ORGANIC AND INORGANIC PHOSPHORUS FRACTIONS OF TEMPERATE-CLIMATE SANDY SOILS 10.1007/bf00012872
Detritusphere effects on P availability and C mineralization in soil 10.1111/ejss.12179
Addressing food waste reduction in Denmark 10.1016/j.foodpol.2014.09.005
Can Particulate Organic Matter Reveal Emerging Changes in Soil Organic Carbon? 10.2136/sssaj2013.12.0533
Effects of forest expansion on mountain grassland 10.1007/s11104-014-2315-2
Evaluation of the leucine incorporation technique for detection of pollution-induced community tolerance to copper in a long-term agricultural field trial with urban waste fertilizers 10.1016/j.envpol.2014.07.013
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Carbohydrates and thermal properties indicate a decrease in stable aggregate carbon following forest colonization of mountain grassland 10.1016/j.soilbio.2015.03.027
Concentration of mineral elements in wheat (Triticum aestivum L.) straw 10.1016/j.biombioe.2015.02.017
Does intake of trace elements through urban gardening in Copenhagen pose a risk to human health? 10.1016/j.envpol.2015.03.011
ORGANIC CARBON DYNAMICS IN DIFFERENT SOIL TYPES AFTER CONVERSION OF FOREST TO AGRICULTURE 10.1002/ldr.2205
Repeated soil application of organic waste amendments reduces draught force and fuel consumption for soil tillage 10.1016/j.agee.2015.06.004
Long-term amendment of urban and animal wastes equivalent to more than 100 years of application had minimal effect on plant uptake of potentially toxic elements 10.1016/j.agee.2016.06.019
Intensification of upland agriculture in Thailand 10.1002/ldr.2596
Repeated application of organic waste affects soil organic matter composition 10.1016/j.soilbio.2016.10.016
Genotypic differences in growth, yield and nutrient accumulation of spring wheat cultivars in response to long-term soil fertility regimes 10.1080/09064710.2016.1229018
Nitrogen turnover, crop use efficiency and soil fertility in a long-term field experiment amended with different qualities of urban and agricultural waste 10.1016/j.agee.2017.01.030
Penicillium bilaii effects on maize growth and P uptake from soil and localized sewage sludge in a rhizobox experiment 10.1007/s00374-016-1149-x
Bacteria as transporters of phosphorus through soil 10.1111/ejss.12314
Cultivar differences in spatial root distribution during early growth in soil, and its relation to nutrient uptake - a study of wheat, onion and lettuce 10.1007/s11104-016-2932-z
Differential responses of root and root hair traits of spring wheat genotypes to phosphorus deficiency in solution culture 10.17221/485/2016-pse
Dissolution kinetics of pyroaurite-type layered double hydroxide doped with Zn 10.1016/j.clay.2015.12.016
Increasing thermal drying temperature of biosolids reduced nitrogen mineralisation and soil N2O emissions 10.1007/s11356-016-6607-3
Localized application of sewage sludge improved plant nitrogen and phosphorus uptake by rhizobox-grown spring wheat 10.1002/jpln.201600153
Measuring Phosphorus Availability in Recently Fertilized Soils with the Diffusive Gradient in Thin Films (DGT) Method - Challenges and Opportunities 10.1080/00103624.2016.1141920
Opportunity costs for maize associated with localised application of sewage sludge derived fertilisers, as indicated by early root and phosphorus uptake responses 10.1007/s11104-016-2865-6
Pig slurry acidification, separation technology and thermal conversion affect phosphorus availability in soil amended with the derived solid fractions, chars or ashes 10.1007/s11104-015-2519-0
Spatiotemporal dynamics of phosphorus release, oxygen consumption and greenhouse gas emissions after localised soil amendment with organic fertilisers 10.1016/j.scitotenv.2016.02.152
The impact of black wattle encroachment of indigenous grasslands on soil carbon, Eastern Cape, South Africa 10.1007/s10530-015-1017-x
Thermal drying of the solid fraction from biogas digestate 10.1016/j.wasman.2015.10.008
Phosphorus characterization and plant availability in soil profiles after long-term urban waste application 10.1016/j.geoderma.2018.11.046
Turnover and isotopic fractionation of carbon from maize leaves as influenced by clay type and content in constructed soil media 10.1007/s00374-015-1085-1
Vigorous Root Growth Is a Better Indicator of Early Nutrient Uptake than Root Hair Traits in Spring Wheat Grown under Low Fertility 10.3389/fpls.2016.00865
Association mapping in Scandinavian winter wheat for yield, plant height and traits important for second-generation bioethanol production 10.3389/fpls.2015.01046
Rapid estimation of sugar release from winter wheat straw during bioethanol production using FTIR-photoacoustic spectroscopy 10.1186/s13068-015-0267-2
Nitrogen fertilization affects silicon concentration, cell wall composition and biofuel potential of wheat straw 10.1016/j.biombioe.2014.03.034
Phosphorus availability from the solid fraction of pig slurry is altered by composting or thermal treatment 10.1016/j.biortech.2014.07.030
Low-P solution culture can be used for screening root growth vigor in soil for high nutrient uptake of spring wheat varieties 10.1080/09064710.2017.1367835
Long-term fertilisation form, level and duration affect the diversity, structure and functioning of soil microbial communities in the field 10.1016/j.soilbio.2018.04.003
Effects of Penicillium bilaii on maize growth are mediated by available phosphorus 10.1007/s11104-018-3756-9
Changes in soil organic carbon stocks after conversion from forest to oil palm plantations in Malaysian Borneo 10.1088/1748-9326/aade0f
Soil greenhouse gas emissions from inorganic fertilizers and recycled oil palm waste products from Indonesian oil palm plantations 10.1111/gcbb.12618
Long-term effects of organic waste fertilizers on soil structure, tracer transport, and leaching of colloids 10.2134/jeq2016.11.0457
Urban allotment gardens for the biomonitoring of atmospheric trace element pollution 10.2134/jeq2018.06.0232
Effects of thermal drying on phosphorus availability from iron-precipitated sewage sludge 10.1002/jpln.201700070
Long-term fertilisation strategies and form affect nutrient budgets and soil test values, soil carbon retention and crop yield resilience 10.1007/s11104-018-3754-y
Long-term P and K fertilisation strategies and balances affect soil availability indices, crop yield depression risk and N use 10.1016/j.eja.2017.02.006
Assimilation dynamics of soil carbon and nitrogen by wheat roots and Collembola DOI:10.1007/s11104-007-9280-y
Possibilities and barriers for recirculation of nutrients and organic matter from urban to rural areas: A technical theoretical framework applied to the medium-sized town Hillerød, Denmark doi:10.1016/j.ecoleng.2006.03.009
Survival of chicken ascarid eggs exposed to different soil types and fungi 10.1016/j.apsoil.2017.10.001
Long-term manure exposure increases soil bacterial community potential for plasmid uptake 10.1111/1758-2229.12138
Net and gross nitrogen turnover in soil amended with acidified and differently dried solids from biogas digestate 10.2136/sssaj2016.03.0059
Layered double hydroxides 10.1021/acs.jafc.7b02604
Nutrient uptake efficiency in ryegrass fertilized with dried digestate solids as affected by acidification and drying temperature 10.1007/s11104-017-3463-y
Modeling solute mass exchange between pore regions in slurry-injected soil columns during intermittent irrigation 10.2136/vzj2018.01.0006
Heavy metal leaching as affected by long-time organic waste fertilizer application 10.2134/jeq2016.11.0458
Nutrient supply to organic agriculture as governed by EU regulations and standards in six European countries 10.1007/s13165-016-0165-3
Phosphorus availability on many organically managed farms in Europe 10.1007/s10705-017-9894-2
The effect of Penicillium bilaii on wheat growth and phosphorus uptake as affected by soil pH, soil P and application of sewage sludge 10.1186/s40538-016-0075-3
Effect of bioeffectors and recycled P-fertiliser products on the growth of spring wheat 10.1186/s40538-016-0074-4
Seed treatment with Penicillium sp. or Mn/Zn can alleviate the negative effects of cold stress in maize grown in soils dependent on soil fertility 10.1111/jac.12288
Residual phosphorus availability after long-term soil application of organic waste 10.1016/j.agee.2018.10.009
Reduced turning frequency and delayed poultry manure addition reduces N loss from sugarcane compost 10.1016/j.wasman.2017.04.001
Improved Phosphorus Recycling in Organic Farming 10.1016/bs.agron.2017.10.004
Plant availability of phosphorus from dewatered sewage sludge, untreated incineration ashes, and other products recovered from a wastewater treatment system 10.1002/jpln.201700206
Life cycle inventory modeling of phosphorus substitution, losses and crop uptake after land application of organic waste products 10.1007/s11367-017-1421-9
New Training to Meet the Global Phosphorus Challenge 10.1021/acs.est.9b03519
Measuring phosphorus fluxes through the root zone of a layered sandy soil 10.1111/j.1365-2389.1992.tb00173.x
Visions of a more precise soil biology doi:10.1111/j.1365-2389.2008.01018.x
Influence of long-term phosphorus fertilisation history on the availability and chemical nature of soil phosphorus 10.1016/j.geoderma.2019.113909
Three different Fourier‐transform mid‐infrared sampling techniques to characterize bio‐organic samples 10.1002/jeq2.20106
Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture 10.1016/bs.agron.2020.06.006
Reliance on Biological Nitrogen Fixation Depletes Soil Phosphorus and Potassium Reserves 10.1007/s10705-020-10101-w
The effects of management practices on soil organic carbon stocks of oil palm plantations in Sumatra, Indonesia 10.1016/j.jenvman.2020.111446
Phosphorus availability of sewage sludges and ashes in soils of contrasting pH 10.1002/jpln.201900323
Non-target analysis of organic waste amended agricultural soils 10.1016/j.chemosphere.2021.130582
Towards integrated cover crop management 10.1016/j.agee.2021.107392
Anders Norman
Norman Anders
ORCID: 0000-0002-1282-394X
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing 10.1111/j.1574-6968.2012.02601.x
Metamobilomics u expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing 10.1111/j.1469-0691.2012.03862.x
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella 10.1038/ismej.2011.181
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil 10.1016/j.soilbio.2011.06.019
Endolithic chlorophyll d-containing phototrophs 10.1038/ismej.2010.195
Conjugative plasmids: vessels of the communal gene pool 10.1098/rstb.2009.0037
Nucleotide sequence of pOLA52: A conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux 10.1016/j.plasmid.2008.03.003
The cda GenoTox assay: A new and sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines 10.1016/j.mrgentox.2007.02.011
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments 10.1016/j.mrgentox.2005.11.008
Construction of a ColD cda promoter-based SOS-green fluorescent protein whole-cell biosensor with higher sensitivity toward genotoxic compounds than constructs based on recA, umuDC, or sul4 promoters 10.1128/aem.71.5.2338-2346.2005
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
An improved method for including upper size range plasmids in metamobilomes 10.1371/journal.pone.0104405
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine 10.1111/1574-6941.12189
Virus-host and CRISPR dynamics in archaea-dominated hypersaline Lake tyrrell, Victoria, Australia 10.1155/2013/370871
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae 10.1371/journal.pone.0041259
Design and synthesis of a quintessential self-transmissible IncX1 plasmid, pX1.0 10.1371/journal.pone.0019912
Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms 10.1186/1471-2164-15-1107
Genome Sequence of Pseudomonas aeruginosa Strain DK1-NH57388A, a Stable Mucoid Cystic Fibrosis Isolate. 10.1128/genomeA.00008-16
A predominant VNTR cluster of Mycobacterium tuberculosis isolates among asylum seekers in the Netherlands and Denmark deciphered by whole genome sequencing. 10.1128/jcm.01100-17
Genomic Epidemiology of a Major Mycobacterium tuberculosis Outbreak: Retrospective Cohort Study in a Low-Incidence Setting Using Sparse Time-Series Sampling. 10.1093/infdis/jix298
Mycobacterium chimaera in Heater-Cooler Units in Denmark Related to Isolates from the United States and United Kingdom. 10.3201/eid2303.161941
Substantial molecular evolution and mutation rates in prolonged latent Mycobacterium tuberculosis infection in humans. 10.1016/j.ijmm.2016.05.017
Complete Genome Sequence of Mycobacterium tuberculosis DKC2, the Predominant Danish Outbreak Strain 10.1128/MRA.01554-18
A Major Mycobacterium tuberculosis outbreak caused by one specific genotype in a low-incidence country: Exploring gene profile virulence explanations 10.1038/s41598-018-30363-3
Direct transmission of within-host Mycobacterium tuberculosis diversity to secondary cases can lead to variable between-host heterogeneity without de novo mutation: A genomic investigation 10.1016/j.ebiom.2019.08.010