Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene
Carlos Molina-Santiago
Zulema Udaondo
María Gómez Lozano
Søren Molin
Juan-Luis Ramos
Environmental microbiology, 2016-10
Maria Gomez-Lozano
Gomez-Lozano Maria
ORCID: 0000-0002-7078-4141
Microaerophilic alkane degradation in Pseudomonas extremaustralis: a transcriptomic and physiological approach.
10.1007/s10295-017-1987-z
Oxidative stress under low oxygen conditions triggers hyperflagellation and motility in the Antarctic bacterium Pseudomonas extremaustralis.
10.1007/s00792-019-01110-x
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.
10.1111/1462-2920.13585
Novel Essential Role of Ethanol Oxidation Genes at Low Temperature Revealed by Transcriptome Analysis in the Antarctic Bacterium Pseudomonas extremaustralis.
10.1371/journal.pone.0145353
Diversity of small RNAs expressed in Pseudomonas species.
10.1111/1758-2229.12233
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.
10.1111/1462-2920.12775
Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa.
10.1128/mbio.01592-14
Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa.
10.1186/1471-2164-15-783
Identification of bacterial small RNAs by RNA sequencing.
10.1007/978-1-4939-0473-0_34
Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa.
10.1111/j.1462-2920.2012.02759.x
Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa
10.13140/RG.2.2.18809.29289
Occurrence and Distribution of Antibiotic Resistance in Artic Bacteria to Enviromental Antibiotic Exposure and Human Fecal Contamination
10.4122/1.1000000082
Søren Molin
Molin Søren
ORCID: 0000-0002-7973-2639
Paper-based sensors for rapid detection of virulence factor produced by Pseudomonas aeruginosa
10.1371/journal.pone.0194157
Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment
10.1111/j.1462-2920.2012.02795.x
Microbial ecology and adaptation in cystic fibrosis airways
10.1111/j.1462-2920.2011.02459.x
A Rhizobium leguminosarum CHDL- (Cadherin-Like-) Lectin Participates in Assembly and Remodeling of the Biofilm Matrix
10.3389/fmicb.2016.01608
Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?
10.1186/s12864-016-2873-1
Typing of Pseudomonas aeruginosa from hemorrhagic pneumonia in mink (Neovison vison)
10.1016/j.vetmic.2012.12.003
Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients
10.1186/s12866-015-0563-9
Distinct roles of extracellular polymeric substances in Pseudomonas aeruginosa biofilm development
10.1111/j.1462-2920.2011.02503.x
The PprA-PprB two-component system activates CupE, the first non-archetypal Pseudomonas aeruginosa chaperione-usher pathway system assembling fimbriae
10.1111/j.1462-2920.2010.02372.x
Dynamics of Mutator and Antibiotic-Resistant Populations in a Pharmacokinetic/Pharmacodynamic Model of Pseudomonas aeruginosa Biofilm Treatment
10.1128/AAC.00617-11
Phenotypes of Non-Attached Pseudomonas aeruginosa Aggregates Resemble Surface Attached Biofilm
10.1371/journal.pone.0027943
Inhibition of Escherichia coli precursor-16S rRNA processing by mouse intestinal contents
10.1046/j.1462-2920.1999.00001.x
A dual role of extracellular DNA during biofilm formation of Neisseria meningitidis
10.1111/j.1365-2958.2010.07054.x
A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms
10.1111/j.1365-2958.2005.05008.x
Early genetic adaptation associated with chronic pseudomonas aeruginosa airways infection
10.1002/ppul.22682
The gef gene from Escherichia coli is regulated at the level of translation
10.1111/j.1365-2958.1991.tb01911.x
Heterogeneity of biofilms formed by nonmucoid Pseudomonas aeruginosa isolates from patients with cystic fibrosis.
10.1128/JCM.43.10.5247-5255.2005
Evolution of the Pseudomonas aeruginosa mutational resistome in an international Cystic Fibrosis clone
10.1038/s41598-017-05621-5
Identification of Bacterial Small RNAs by RNA Sequencing
10.1007/978-1-4939-0473-0_34
Volatile metabolites from some gram-negative bacteria
10.1016/S0045-6535(97)00209-9
Polysaccharides serve as scaffold of biofilms formed by mucoid Pseudomonas aeruginosa.
10.1111/j.1574-695X.2012.00936.x
Initial Pseudomonas aeruginosa infection in patients with cystic fibrosis: characteristics of eradicated and persistent isolates
10.1111/j.1469-0691.2011.03627.x
Microfluidic dissolved oxygen gradient generator biochip as a useful tool in bacterial biofilm studies
10.1039/c003558k
Genome Analysis of a Transmissible Lineage of Pseudomonas aeruginosa Reveals Pathoadaptive Mutations and Distinct Evolutionary Paths of Hypermutators.
10.1371/journal.pgen.1003741
Evolutionary dynamics of bacteria in a human host environment
10.1073/pnas.1018249108
Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins
10.1111/j.1462-2920.2004.00605.x
Antimicrobial activities of YycG histidine kinase inhibitors against Staphylococcus epidermidis biofilms
10.1111/j.1574-6968.2007.00749.x
The Small RNA ErsA of Pseudomonas aeruginosa Contributes to Biofilm Development and Motility through Post-transcriptional Modulation of AmrZ
10.3389/fmicb.2018.00238
Effects of Colistin on Surface Ultrastructure and Nanomechanics of Pseudomonas aeruginosa Cells
10.1021/la803898g
Root growth and exudate production define the frequency of horizontal plasmid transfer in the Rhizosphere
10.1111/j.1574-6941.2006.00229.x
Role of Extracellular DNA during Biofilm Formation by Listeria monocytogenes
10.1128/AEM.02361-09
Long-term social dynamics drive loss of function in pathogenic bacteria
10.1073/pnas.1508324112
The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is shaped by strong epistatic interactions
10.1038/ncomms13002
Biofilm Induced Tolerance Towards Antimicrobial Peptides
10.1371/journal.pone.0001891
Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis
10.1371/journal.pone.0083124
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene
10.1111/1462-2920.13585
Monitoring bacterial growth activity in biofilms from laboratory flow chambers, plant rhizosphere, and animal intestine
10.1016/S0076-6879(01)37004-0
Metabolic commensalism and competition in a two-species microbial consortium
10.1128/AEM.68.5.2495-2502.2002
Diversity of small RNAs expressed in Pseudomonas species
10.1111/1758-2229.12233
Selection of hyperadherent mutants in Pseudomonas putida biofilms
10.1099/mic.0.047787-0
Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts
10.1073/pnas.1221466110
Early adaptive developments of Pseudomonas aeruginosa after the transition from life in the environment to persistent colonization in the airways of human cystic fibrosis hosts
10.1111/j.1462-2920.2010.02211.x
High in vitro antimicrobial activity of β-peptoid-peptide hybrid oligomers against planktonic and biofilm cultures of Staphylococcus epidermidis.
10.1016/j.ijantimicag.2012.09.014
Draft Genome Sequences of Pseudomonas aeruginosa B3 Strains Isolated from a Cystic Fibrosis Patient Undergoing Antibiotic Chemotherapy
10.1128/genomeA.00804-13
Pseudomonas aeruginosa adaptation to lungs of cystic fibrosis patients leads to lowered resistance to phage and protist enemies.
10.1371/journal.pone.0075380
Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients
10.2217/FMB.15.3
Antimicrobial and antistaphylococcal biofilm activity from the sea urchin Paracentrotus lividus
10.1111/j.1365-2672.2009.04394.x
Effects of ginseng on Pseudomonas aeruginosa motility and biofilm formation
10.1111/j.1574-695X.2011.00787.x
Genome‐wide identification of novel small RNAs in Pseudomonas aeruginosa
10.1111/j.1462-2920.2012.02759.x
Secreted single‐stranded DNA is involved in the initial phase of biofilm formation by Neisseria gonorrhoeae
10.1111/1462-2920.12291
What Makes Pseudomonas Aeruginosa Persist in the Lungs of CF Patients?
10.1002/ppul.23297
Bacteriocin-mediated competition in cystic fibrosis lung infections
10.1098/rspb.2015.0972
Suicide Microbes on the loose
10.1038/nbt0195-35
sarA negatively regulates Staphylococcus epidermidis biofilm formation by modulating expression of 1 MDa extracellular matrix binding protein and autolysis‐dependent release of eDNA
10.1111/j.1365-2958.2012.08203.x
Identification and characterization of an N-acylhomoserine lactone-dependent quorum-sensing system in Pseudomonas putida strain IsoF
10.1128/AEM.68.12.6371-6382.2002
Microbial motility involvement in biofilm structure formation
10.2166/wst.2007.275
In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cells
10.1128/AEM.66.5.1796-1800.2000
In situ identification of polyphosphate- and polyhydroxyalkanoate-accumulating traits for microbial populations in a biological phosphorus removal process
10.1046/j.1462-2920.2001.00164.x
Modular microfluidic system as a model of cystic fibrosis airways
10.1063/1.4742911
Antibiotic resistance of bacterial biofilms
10.1016/j.ijantimicag.2009.12.011
Collateral sensitivity cycling of antibiotics for cystic fibrosis airway
10.1016/S1569-1993(16)30365-4
Mutations in 23S rRNA Confer Resistance against Azithromycin in Pseudomonas aeruginosa
10.1128/AAC.00630-12
Differentiation and distribution of colistin- and sodium dodecyl sulfate-tolerant cells in Pseudomonas aeruginosa biofilms
10.1128/JB.00720-06
Pseudomonas aeruginosa extracellular products inhibit staphylococcal growth, and disrupt established biofilms produced by Staphylococcus epidermidis
10.1099/mic.0.028001-0
Draft Genome Sequence of Acinetobacter johnsonii C6, an Environmental Isolate Engaging in Interspecific Metabolic Interactions
10.1128/genomeA.00155-17
Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective.
10.1038/nrmicro2907
Towards quantitative SERS detection of hydrogen cyanide at ppb level for human breath analysis
10.1016/j.sbsr.2015.07.002
Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa
10.1186/1471-2164-15-783
Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa.
10.1128/mBio.01592-14
Bacterial evolution in PCD and CF patients follows the same mutational steps
10.1038/srep28732
Activity of toluene-degrading Pseudomonas putida in the early growth phase of a biofilm for waste gas treatment
10.1002/(SICI)1097-0290(19970420)54:2<131::AID-BIT5>3.0.CO;2-M
Sublethal Ciprofloxacin Treatment Leads to Rapid Development of High-Level Ciprofloxacin Resistance during Long-Term Experimental Evolution of Pseudomonas aeruginosa
10.1128/AAC.00493-13
Sandwich hybridisation assay for quantitative detection of yeast RNAs in crude cell lysates
10.1186/1475-2859-2-4
Erratum: Pattern differentiation in co-culture biofilms formed by Staphylococcus aureus and Pseudomonas aeruginosa
10.1111/j.1574-695X.2011.00849.x
In situ growth rates and biofilm development of Pseudomonas aeruginosa populations in chronic lung infections
10.1128/JB.01581-07
Statistical Analysis of Pseudomonas aeruginosa Biofilm Development: Impact of Mutations in Genes Involved in Twitching Motility, Cell-to-Cell Signaling, and Stationary-Phase Sigma Factor Expression
10.1128/AEM.68.4.2008-2017.2002
Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure
10.1016/S0958-1669(03)00036-3
Control of exoenzyme production, motility and cell differentiation in Serratia liquefaciens
10.1111/j.1574-6968.1997.tb10276.x
Evolution of species interactions in a biofilm community
10.1038/nature05514
Evolutionary dynamics of pseudomonas aeruginosa in CF
10.1002/ppul.22681
Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosacystic fibrosis bacterial isolates
10.1111/jeb.12774
Within-host evolution of Pseudomonas aeruginosa reveals adaptation toward iron acquisition from hemoglobin.
10.1128/mBio.00966-14
Quantification of Leuconostoc populations in mixed dairy starter cultures using fluorescence in situ hybridization
10.1111/j.1365-2672.2007.03298.x
Characterization of a Pseudomonas putida rough variant evolved in a mixed species biofilm with Acinetobacter sp. strain C6
10.1128/JB.00041-07
Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection
10.1038/ismej.2011.83
Electrochemical sensing of biomarker for diagnostics of bacteria-specific infections
10.2217/nnm-2016-0155
Novel experimental Pseudomonas aeruginosa lung infection model mimicking long-term host-pathogen interactions in cystic fibrosis
10.1111/j.1600-0463.2008.00018.x
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E
10.1111/1462-2920.12775
Evaluation of Enoyl-Acyl Carrier Protein Reductase Inhibitors as Pseudomonas aeruginosa Quorum-Quenching Reagents
10.3390/molecules15020780
Combating biofilms
10.1111/j.1574-695X.2011.00858.x
Lipopolysaccharide’s role in the association of Salmonella cells to the mouse intestine studied by ribosomal in situ hybridization
10.1007/978-1-4613-0415-9_14
Formation and properties of in vitro biofilms of ica-negative Staphylococcus epidermidis clinical isolates
10.1099/jmm.0.46799-0
Sodium Dodecyl Sulfate (SDS)-Loaded Nanoporous Polymer as Anti-Biofilm Surface Coating Material
10.3390/ijms14023050
Antibiotic combination therapy can select for broad-spectrum multidrug resistance in Pseudomonas aeruginosa
10.1016/j.ijantimicag.2015.09.014
Synergistic Activities of an Efflux Pump Inhibitor and Iron Chelators against Pseudomonas aeruginosa Growth and Biofilm Formation
10.1128/AAC.00463-10
Adhesive properties of Staphylococcus epidermidis probed by atomic force microscopy
10.1039/c0cp02800b
Pseudomonas aeruginosa and Saccharomyces cerevisiae Biofilm in Flow Cells
10.3791/2383
Fast Selective Detection of Pyocyanin Using Cyclic Voltammetry
10.3390/s16030408
SERS detection of the biomarker hydrogen cyanide from Pseudomonas aeruginosa cultures isolated from cystic fibrosis patients
10.1038/srep45264
Organic compounds inhibiting S. epidermidis adhesion and biofilm formation
10.1016/j.ultramic.2009.03.040
Current understanding of multi-species biofilms
10.4248/IJOS11027
Pattern differentiation in co-culture biofilms formed by Staphylococcus aureus and Pseudomonas aeruginosa
10.1111/j.1574-695X.2011.00820.x
Diversity of metabolic profiles of cystic fibrosis Pseudomonas aeruginosa during the early stages of lung infection
10.1099/mic.0.000093
Staphylococcus epidermidis recovered from indwelling catheters exhibit enhanced biofilm dispersal and "self-renewal" through downregulation of agr
10.1186/1471-2180-12-102
Evolution and Adaptation in Pseudomonas aeruginosa Biofilms Driven by Mismatch Repair System-Deficient Mutators
10.1371/journal.pone.0027842
Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections
10.1371/journal.pgen.1004651
Molecular epidemiology and dynamics of Pseudomonas aeruginosa populations in lungs of cystic fibrosis patients
10.1128/IAI.01282-06
Planktonic replication is essential for biofilm formation by Legionella pneumophila in a complex medium under static and dynamic flow conditions
10.1128/AEM.72.4.2885-2895.2006
A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production
10.1016/j.gene.2011.11.005
Diversity, Prevalence, and Longitudinal Occurrence of Type II Toxin-Antitoxin Systems of Pseudomonas aeruginosa Infecting Cystic Fibrosis Lungs
10.3389/fmicb.2017.01180
Mucoid Pseudomonas aeruginosa isolates maintain the biofilm formation capacity and the gene expression profiles during the chronic lung infection of CF patients
10.1111/j.1600-0463.2011.02726.x
Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system
10.1128/AEM.71.12.8611–8617.2005
Evidence of increased spread and establishment of plasmid RP4 in the intestine under sub-inhibitory tetracycline concentrations
10.1016/S0168-6496(03)00016-3
Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis.
10.1038/ng.3148
SERS spectroscopy for detection of hydrogen cyanide in breath from children colonised with P. aeruginosa
10.1039/C7AY01693J
Is there a role for quorum sensing signals in bacterial biofilms?
10.1016/S1369-5274(02)00325-9
In vitro anti-Gram-positive and antistaphylococcal biofilm activity of newly halogenated pyrroles related to pyrrolomycins
10.1016/j.ijantimicag.2007.10.013
Structure-based discovery of inhibitors of the YycG histidine kinase
10.1186/1471-2180-6-96
Novel Essential Role of Ethanol Oxidation Genes at Low Temperature Revealed by Transcriptome Analysis in the Antarctic Bacterium Pseudomonas extremaustralis
10.1371/journal.pone.0145353
Transcriptional regulation of pWW0 transfer genes in Pseudomonas putida KT2440
10.1016/j.plasmid.2004.06.005
A bioluminescent derivative of Pseudomonas putida KT2440 for deliberate release into the environment
10.1111/j.1574-6941.2000.tb00758.x
Convergent Metabolic Specialization through Distinct Evolutionary Paths in Pseudomonas aeruginosa
10.1128/mBio.00269-18
Colistin-Tobramycin Combinations Are Superior to Monotherapy Concerning the Killing of Biofilm Pseudomonas aeruginosa
10.1086/656788
Archetypal analysis of diverse Pseudomonas aeruginosa transcriptomes reveals adaptation in cystic fibrosis airways
10.1186/1471-2105-14-279
Role of autolysin-mediated DNA-release in biofilm formation of Staphylococcus epidermidis
10.1099/mic.0.2007/006031-0
A Mig-14-like protein (PA5003) affects antimicrobial peptide recognition in Pseudomonas aeruginosa
10.1099/mic.0.049445-0
Role of Cell Death and Autolysis for DNA Release and Biofilm Development in Neisseria meningitidis
10.1016/j.ijmm.2008.08.001
Suicidal genetic elements and their use in biological containment of bacteria
10.1146/annurev.mi.47.100193.001035
Topographic analysis of the toxic Gef protein from Escherichia coli
10.1111/j.1365-2958.1991.tb01910.x
Bacterial adaptation during chronic infection revealed by independent component analysis of transcriptomic data
10.1186/1471-2180-11-184
Development of Spatial Distribution Patterns by Biofilm Cells
10.1128/AEM.01614-15
Augmented effect of early antibiotic treatment in mice with experimental lung infections due to sequentially adapted mucoid strains of Pseudomonas aeruginosa
10.1093/jac/dkp352
Effect of Oxygen Limitation and Starvation on the Benzalkonium Chloride Susceptibility of Escherichia coli
10.1111/j.1365-2672.2008.03901.x
Microaerophilic alkane degradation in Pseudomonas extremaustralis: a transcriptomic and physiological approach
10.1007/s10295-017-1987-z
Evolutionary Highways to Persistent Bacterial Infection
10.1101/326025
Privatisation rescues function following loss of cooperation
10.1101/326165
Drug-Driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections
10.1016/j.cell.2017.12.012
High-resolution in situ transcriptomics of Pseudomonas aeruginosa unveils genotype independent patho-phenotypes in cystic fibrosis lungs
10.1038/s41467-018-05944-5
Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts
10.1038/s41598-018-30972-y
Privatisation rescues function following loss of cooperation
10.7554/eLife.38594
High persister phenotype of Pseudomonas Aeruginosa is associated with increased fitness in cystic fibrosis airways
10.1002/ppul.24152
Evolutionary highways to persistent bacterial infection
10.1038/s41467-019-08504-7
The high persister phenotype of Pseudomonas aeruginosa is associated with increased fitness and persistence in cystic fibrosis airways
10.1101/561589
Filamentous bacteriophages are associated with chronic Pseudomonas lung infections and antibiotic resistance in cystic fibrosis
10.1126/scitranslmed.aau9748
Hypermutator Pseudomonas aeruginosa exploits multiple genetic pathways to develop multidrug resistance during long-term infections in the airways of cystic fibrosis patients
10.1101/809319
Oxidative stress under low oxygen conditions triggers hyperflagellation and motility in the Antarctic bacterium Pseudomonas extremaustralis
10.1007/s00792-019-01110-x
Structure of Pseudomonas aeruginosa ribosomes from an aminoglycoside-resistant clinical isolate
10.1073/pnas.1909831116
Adapting to the airways: Metabolic requirements of Pseudomonas aeruginosa during the infection of cystic fibrosis patients
10.3390/metabo9100234
Nanograss sensor for selective detection of Pseudomonas aeruginosa by pyocyanin identification in airway samples
10.1016/j.ab.2020.113586
Antibiotic resistance in Pseudomonas aeruginosa and adaptation to complex dynamic environments
10.1099/mgen.0.000370
Visualizing the invisible: class excursions to ignite children's enthusiasm for microbes
10.1111/1751-7915.13576
Electrochemical Detection of Pyocyanin as a Biomarker for Pseudomonas aeruginosa: A Focused Review
10.3390/s20185218
Microcontainer Delivery of Antibiotic Improves Treatment of Pseudomonas aeruginosa Biofilms
10.1002/adhm.201901779
Bacterial Cell Cultures in a Lab-on-a-Disc: A Simple and Versatile Tool for Quantification of Antibiotic Treatment Efficacy
10.1021/acs.analchem.0c02582
Antibiotic resistance: turning evolutionary principles into clinical reality
10.1093/femsre/fuaa001
Gene Loss and Acquisition in Lineages of Pseudomonas aeruginosa Evolving in Cystic Fibrosis Patient Airways
10.1128/mBio.02359-20
Bacterial persisters in long-term infection: Emergence and fitness in a complex host environment
10.1371/journal.ppat.1009112
Hypermutator Pseudomonas aeruginosa Exploits Multiple Genetic Pathways To Develop Multidrug Resistance during Long-Term Infections in the Airways of Cystic Fibrosis Patients
10.1128/aac.02142-19
Omics-based tracking of Pseudomonas aeruginosa persistence in "eradicated" CF patients
10.1183/13993003.00512-2020
Co-delivery of ciprofloxacin and colistin using microcontainers for bacterial biofilm treatment
10.1016/j.ijpharm.2021.120420
Enhanced Eradication of Mucin‐Embedded Bacterial Biofilm by Locally Delivered Antibiotics in Functionalized Microcontainers
10.1002/mabi.202100150
Zulema Udaondo
Udaondo Zulema
ORCID: 0000-0003-3445-6842
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli.
10.1111/1758-2229.12553
The pangenome of the genus Clostridium.
10.1111/1462-2920.13732
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.
10.1128/genomea.01752-16
Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.
10.3389/fmicb.2016.02100
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.
10.1111/1462-2920.13585
Pseudomonas putida as a platform for the synthesis of aromatic compounds.
10.1099/mic.0.000333
Specific Gene Loci of Clinical Pseudomonas putida Isolates.
10.1371/journal.pone.0147478
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.
10.1128/genomea.00373-16
First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid.
10.1111/1751-7915.12333
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium.
10.1128/genomea.00904-15
Analysis of the core genome and pangenome of Pseudomonas putida.
10.1111/1462-2920.13015
Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.
10.1016/j.syapm.2015.07.002
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics.
10.1111/1751-7915.12295
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida.
10.1093/femsre/fuv006
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.
10.1111/1462-2920.12775
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J.
10.1111/1758-2229.12245
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440.
10.1111/1758-2229.12167
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital.
10.1371/journal.pone.0081604
Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234.
10.1128/genomea.00496-13
Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.
10.1111/1751-7915.12061
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1.
10.1111/1462-2920.12037
Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS.
10.1371/journal.pone.0039390
Evolution of antibiotic resistance, catabolic pathways and niche colonization.
10.1111/j.1751-7915.2012.00335.x
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants.
10.1016/j.febslet.2012.07.031
Mining for novel antibiotics in the age of antimicrobial resistance.
10.1111/1751-7915.13662
Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries.
10.1111/1462-2920.15138
Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing.
10.1093/ofid/ofaa180
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide.
10.3389/fmicb.2020.00202
Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia.
10.1128/mra.01380-19
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.
10.1016/j.meegid.2019.103965
Microbiomes as the new keystone for life sciences development.
10.1111/1751-7915.13424
Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.
10.1128/mra.00222-19
Towards a better metabolic engineering reference: the microbial chassis.
10.1111/1751-7915.13363
Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5.
10.1128/mra.00997-18
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production.
10.1111/1751-7915.13269
Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators.
10.1111/1751-7915.13263
Fighting the enemy: one health approach against microbial resistance
10.1111/1751-7915.13587
Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure
10.3390/metabo11080540
Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon
10.3390/life11080862
Carlos Molina-Santiago
Molina-Santiago Carlos
/ Molina-Santiago, C
ORCID: 0000-0002-1131-8917
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.
10.1111/1462-2920.12775
GtrS and GltR form a two-component system: the central role of 2-ketogluconate in the expression of exotoxin A and glucose catabolic enzymes in Pseudomonas aeruginosa.
10.1093/nar/gku496
Bactericidal and bacteriostatic antibiotics and the Fenton reaction.
10.1111/1751-7915.12120
Interspecies signalling: Pseudomonas putida efflux pump TtgGHI is activated by indole to increase antibiotic resistance.
10.1111/1462-2920.12368
Fructooligosacharides reduce Pseudomonas aeruginosa PAO1 pathogenicity through distinct mechanisms.
10.1371/journal.pone.0085772
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital
10.1371/journal.pone.0081604
Identification of new residues involved in intramolecular signal transmission in a prokaryotic transcriptional repressor.
10.1128/JB.00589-13
Antibiotic adjuvants: identification and clinical use.
10.1111/1751-7915.12044
Evolution of antibiotic resistance, catabolic pathways and niche colonization.
10.1111/j.1751-7915.2012.00335.x
Mechanisms of resistance to chloramphenicol in Pseudomonas putida KT2440.
10.1128/AAC.05398-11
Directed evolution, natural products for cancer chemotherapy, and micro-biosensing robots.
10.1111/j.1751-7915.2011.00267.x
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.
10.1111/1462-2920.13585
Pseudomonas putida as a platform for the synthesis of aromatic compounds.
10.1099/mic.0.000333
A Pseudomonas putida double mutant deficient in butanol assimilation: a promising step for engineering a biological biofuel production platform.
10.1093/femsle/fnw018
Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach.
10.1111/1751-7915.12328
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics.
10.1111/1751-7915.12295
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida.
10.1093/femsre/fuv006
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli
10.1111/1758-2229.12553
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J
10.1111/1758-2229.12245
Diversity of small RNAs expressed in Pseudomonas species
10.1111/1758-2229.12233
Insights in a novel gram‐positive type IV secretion system
10.1111/1462-2920.14296
The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization
10.1038/s41467-019-09944-x
Microbiomes as the new keystone for life sciences development
10.1111/1751-7915.13424
Chemical fertilization: a short‐term solution for plant productivity?
10.1111/1751-7915.13515
Dual functionality of the amyloid protein TasA in Bacillus physiology and fitness on the phylloplane
10.1038/s41467-020-15758-z
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide.
10.3389/fmicb.2020.00202
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages.
10.1016/j.foodchem.2019.125290
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production.
10.1111/1751-7915.13269
The race for antimicrobials in the multidrug resistance era.
10.1111/1751-7915.12884
More than words: the chemistry behind the interactions in the plant holobiont
10.1111/1462-2920.15197