Probabilistic assignment of formulas to mass peaks in metabolomics experiments
Rogers, S. Scheltema, R.A. Girolami, M. Breitling, R.
Bioinformatics, 2009-2
https://doi.org/10.1093/bioinformatics/btn642
Richard Scheltema
Scheltema Richard
ORCID: 0000-0002-1668-0253
Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry 10.1074/mcp.ra120.002094
Structural Proteomics Applied to Plant Membrane Protein Complexes 10.1016/j.tplants.2020.04.002
How paired PSII–LHCII supercomplexes mediate the stacking of plant thylakoid membranes unveiled by structural mass-spectrometry 10.1038/s41467-020-15184-1
To Cleave or Not To Cleave in XL-MS? 10.1021/jasms.9b00085
Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling 10.1073/pnas.1911785117
Expanding the mass range for UVPD-based native top-down mass spectrometry 10.1039/c9sc01857c
PhoX: An IMAC-Enrichable Cross-Linking Reagent 10.1021/acscentsci.9b00416
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study 10.1021/acs.analchem.9b00658
Life history shapes variation in egg composition in the blue tit Cyanistes caeruleus 10.1038/s42003-018-0247-8
Cross-ID: Analysis and Visualization of Complex XL–MS-Driven Protein Interaction Networks 10.1021/acs.jproteome.8b00725
Efficient and robust proteome-wide approaches for cross-linking mass spectrometry 10.1038/s41596-018-0074-x
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei 10.1074/mcp.ra118.000924
Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-α/TANC2 Recruits DCVs to Postsynaptic Sites 10.1016/j.celrep.2018.06.071
Phosphate Transfer in Activated Protein Complexes Reveals Interaction Sites 10.1002/anie.201706749
Spacer capture and integration by a type I-F Cas1–Cas2-3 CRISPR adaptation complex 10.1073/pnas.1618421114
Combining Deep Sequencing, Proteomics, Phosphoproteomics, and Functional Screens To Discover Novel Regulators of Sphingolipid Homeostasis 10.1021/acs.jproteome.6b00691
Deciphering the Interplay among Multisite Phosphorylation, Interaction Dynamics, and Conformational Transitions in a Tripartite Protein System 10.1021/acscentsci.6b00053
Opposite Electron-Transfer Dissociation and Higher-Energy Collisional Dissociation Fragmentation Characteristics of Proteolytic K/R(X)n and (X)nK/R Peptides Provide Benefits for Peptide Sequencing in Proteomics and Phosphoproteomics 10.1021/acs.jproteome.6b00825
Arginine (Di)methylated Human Leukocyte Antigen Class I Peptides Are Favorably Presented by HLA-B*07 10.1021/acs.jproteome.6b00528
Symmetry of Charge Partitioning in Collisional and UV Photon-Induced Dissociation of Protein Assemblies 10.1021/jacs.6b05147
Implementation of Ultraviolet Photodissociation on a Benchtop Q Exactive Mass Spectrometer and Its Application to Phosphoproteomics 10.1021/acs.analchem.5b04162
Time‐ and compartment‐resolved proteome profiling of the extracellular niche in lung injury and repair 10.15252/msb.20156123
A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day 10.1074/mcp.o115.049460
The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer 10.1074/mcp.m114.043489
Structural Model of a CRISPR RNA-Silencing Complex Reveals the RNA-Target Cleavage Activity in Cmr4 10.1016/j.molcel.2014.09.002
qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments 10.1074/mcp.m113.035907
Direct Proteomic Quantification of the Secretome of Activated Immune Cells 10.1126/science.1232578
SprayQc: A Real-Time LC–MS/MS Quality Monitoring System To Maximize Uptime Using Off the Shelf Components 10.1021/pr201219e
A Framework for Intelligent Data Acquisition and Real-Time Database Searching for Shotgun Proteomics 10.1074/mcp.m111.013185
PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis 10.1021/ac2000994
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment 10.1021/pr101065j
Metabolomics to Unveil and Understand Phenotypic Diversity between Pathogen Populations 10.1371/journal.pntd.0000904
Simple data-reduction method for high-resolution LC–MS data in metabolomics 10.4155/bio.09.146
Towards an unbiased metabolic profiling of protozoan parasites: optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis 10.1007/s00216-010-4139-0
Two time-point assessment of bile acid kinetics in humans using stable isotopes 10.1080/10256016.2010.503894
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments 10.1186/gb-2010-11-3-r27
Metabolomic Characterization of the Salt Stress Response in Streptomyces coelicolor 10.1128/aem.01992-09
The potential of metabolomics for Leishmania research in the post-genomics era 10.1017/s0031182009992022
System-wide molecular evidence for phenotypic buffering in Arabidopsis 10.1038/ng.308
Probabilistic assignment of formulas to mass peaks in metabolomics experiments 10.1093/bioinformatics/btn642
Increasing the mass accuracy of high-resolution LC-MS data using background ions - a case study on the LTQ-Orbitrap 10.1002/pmic.200800314
Metabolomic profiling using Orbitrap Fourier transform mass spectrometry with hydrophilic interaction chromatography: a method with wide applicability to analysis of biomolecules 10.1002/rcm.3564
Finding and using diagnostic ions in collision induced crosslinked peptide fragmentation spectra 10.1016/j.ijms.2019.116184
A Colorful Pallet of B-Phycoerythrin Proteoforms Exposed by a Multimodal Mass Spectrometry Approach 10.1016/j.chempr.2019.03.006
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification 10.1038/ncomms15473
High Performance Computational Analysis of Large-scale Proteome Data Sets to Assess Incremental Contribution to Coverage of the Human Genome 10.1021/pr400181q
Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining 10.1007/s11306-009-0196-9
Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry. 10.1016/j.str.2020.09.011
LifeTime and improving European healthcare through cell-based interceptive medicine. 10.1038/s41586-020-2715-9
Simon Rogers
Rogers Simon
ORCID: 0000-0003-3578-4477
An Optimal Frequency in Ca2+ Oscillations for Stomatal Closure Is an Emergent Property of Ion Transport in Guard Cells 10.1104/pp.15.01607
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. 10.1093/bioinformatics/btv072
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. 10.1093/bioinformatics/btu370
Probabilistic assignment of formulas to mass peaks in metabolomics experiments. 10.1093/bioinformatics/btn642
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. 10.1093/bioinformatics/btn553
Bayesian model-based inference of transcription factor activity. 10.1186/1471-2105-8-S2-S2
Identification of prognostic signatures in breast cancer microarray data using Bayesian techniques. 10.1098/rsif.2005.0093
A Bayesian regression approach to the inference of regulatory networks from gene expression data. 10.1093/bioinformatics/bti487
The latent process decomposition of cDNA microarray data sets. 10.1109/TCBB.2005.29
HDP-Align: Hierarchical Dirichlet Process Clustering for Multiple Peak Alignment of Liquid Chromatography Mass Spectrometry Data 10.1101/074831
Topic modeling for untargeted substructure exploration in metabolomics 10.1073/pnas.1608041113
Global Sensitivity Analysis of OnGuard Models Identifies Key Hubs for Transport Interaction in Stomatal Dynamics 10.1104/pp.17.00170
Unexpected Connections between Humidity and Ion Transport Discovered Using a Model to Bridge Guard Cell-to-Leaf Scales 10.1105/tpc.17.00694
Minimally-destructive atmospheric ionisation mass spectrometry authenticates authorship of historical manuscripts 10.1038/s41598-018-28810-2
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra 10.1101/491506
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra 10.1039/C8FD00235E
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools 10.1101/654459
EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture 10.1104/pp.18.00217
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools 10.3390/metabo9070144
In-silico Optimisation of Mass Spectrometry Fragmentation Strategies in Metabolomics 10.1101/744227
In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics 10.3390/metabo9100219
Gestational-age-dependent development of the neonatal metabolome 10.1101/2020.03.27.20045534
Universal MS/MS Visualization and Retrieval with the Metabolomics Spectrum Resolver Web Service 10.1101/2020.05.09.086066
Predicting host taxonomic information from viral genomes: A comparison of feature representations 10.1371/journal.pcbi.1007894
Decomposing metabolite set activity levels with PALS 10.1101/2020.06.07.138974
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions 10.1101/2020.06.12.148205
matchms - processing and similarity evaluation of mass spectrometry data 10.1101/2020.08.06.239244
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships 10.1101/2020.08.11.245928
Probabilistic Framework for Integration of Mass Spectrum and Retention Time Information in Small Molecule Identification 10.1101/2020.08.19.255653
matchms - processing and similarity evaluation of mass spectrometry data. 10.21105/joss.02411
Rapid Development of Improved Data-dependent Acquisition Strategies 10.1101/2020.09.11.293092
User guide to the red blood cell model (RCM), a multiplatform JAVA-based model of human red blood cell homeostasis 10.1101/2020.03.07.981779
Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification 10.1093/bioinformatics/btaa998
Comparative Metabologenomics Analysis of Polar Actinomycetes 10.3390/md19020103
Ranking Metabolite Sets by Their Activity Levels 10.3390/metabo11020103
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships 10.1371/journal.pcbi.1008724
Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits 10.1371/journal.pcbi.1008706
PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells 10.1371/journal.pcbi.1008496
Rapid Development of Improved Data-Dependent Acquisition Strategies 10.1021/acs.analchem.0c03895
Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches 10.1039/D1NP00023C
Using topic modeling to detect cellular crosstalk in scRNA-seq 10.1101/2021.07.26.453767
Mark Girolami
Girolami Mark
ORCID: 0000-0003-3008-253X
A Methodology for Prognostics Under the Conditions of Limited Failure Data Availability 10.1109/ACCESS.2019.2960310
Bayesian inference for model selection: An application to aberrant signalling pathways in chronic myeloid leukaemia 10.1017/CBO9781139012751.009
Manifold MCMC for mixtures 10.1002/9781119995678.ch12
Definition of valid proteomic biomarkers: A bayesian solution 10.1007/978-3-642-04031-3_13
Biologically valid linear factor models of gene expressions 10.1093/bioinformatics/bth354
Propagative broad learning for nonparametric modeling of ambient effects on structural health indicators 10.1177/1475921720916923
Inferring meta-covariates in classification 10.1007/978-3-642-04031-3_14
In vivo multiplex molecular imaging of vascular inflammation using surface-enhanced Raman spectroscopy 10.7150/thno.28665
Identification of prognostic signatures in breast cancer microarray data using Bayesian techniques 10.1098/rsif.2005.0093
Discussion of the paper: "sampling schemes for generalized linear dirichlet process random effects models" by M. Kyung, J. Gill, and G. Casella 10.1007/s10260-011-0170-3
Markov chain monte carlo inference for markov jump processes via the linear noise approximation 10.1098/rsta.2011.0541
A general framework for a principled hierarchical visualization of multivariate data 10.1007/3-540-45675-9_78
Topic based language models for ad hoc Information Retrieval 10.1109/IJCNN.2004.1381205
Statistical analysis of differential equations: introducing probability measures on numerical solutions 10.1007/s11222-016-9671-0
The organisation and visualisation of document corpora: A probabilistic approach 10.1109/DEXA.2000.875081
A Bayesian approach to multiscale inverse problems with on-the-fly scale determination 10.1016/j.jcp.2016.08.031
Probabilistic numerics and uncertainty in computations 10.1098/rspa.2015.0142
Blind source separation of more sources than mixtures using overcomplete representations 10.1109/97.752062
Hyperpriors for matérn fields with applications in bayesian inversion 10.3934/ipi.2019001
Rejoinder: Geodesic Monte Carlo on embedded manifolds 10.1111/sjos.12058
Accelerated whole-core analysis optimization with wellsite tomography instrumentation and Bayesian inversion 10.30632/PJV60N3-2019a2
Statistical and probabilistic fundamentals of ICA 10.1049/ic:20040613
Population MCMC methods for history matching and uncertainty quantification 10.3997/2214-4609.20144977
Probabilistic model checking of DTMC Models of user activity patterns 10.1007/978-3-319-10696-0_11
Population MCMC methods for history matching and uncertainty quantification 10.1007/s10596-011-9232-8
ParCrys: A Parzen window density estimation approach to protein crystallization propensity prediction 10.1093/bioinformatics/btn055
Protein interaction sentence detection using multiple semantic kernels 10.1186/2041-1480-2-1
Detecting worm variants using machine learning 10.1145/1364654.1364657
Generalised independent component analysis through unsupervised learning with emergent bussgang properties 10.1109/ICNN.1997.614168
Bayesian Probabilistic Numerical Methods in Time-Dependent State Estimation for Industrial Hydrocyclone Equipment 10.1080/01621459.2019.1574583
A determinant-free method to simulate the parameters of large Gaussian fields 10.1002/sta4.153
Noise reduction and speech enhancement via temporal anti-Hebbian learning 10.1109/ICASSP.1998.675494
BioBayes: A software package for Bayesian inference in systems biology 10.1093/bioinformatics/btn338
Clinical proteomics: A need to define the field and to begin to set adequate standards 10.1002/prca.200600771
Investigating the Relationship between Language Model Perplexity and IR Precision-Recall Measures 10.1145/860500.860505
Novelty detection employing an L2 optimal non-parametric density estimator 10.1016/j.patrec.2004.05.004
Latent variable models for the topographic organisation of discrete and strictly positive data 10.1016/S0925-2312(01)00659-2
Automated, High Accuracy Classification of Parkinsonian Disorders: A Pattern Recognition Approach 10.1371/journal.pone.0069237
Extraction of independent signal sources using a deflationary exploratory projection pursuit network with lateral inhibition 10.1049/ip-vis:19971418
Estimating Bayes factors via thermodynamic integration and population MCMC 10.1016/j.csda.2009.07.025
Probabilistic prediction of neurological disorders with a statistical assessment of neuroimaging data modalities 10.1214/12-AOAS562
An Alternative Perspective on Adaptive Independent Component Analysis Algorithms 10.1162/089976698300016981
A probabilistic framework for the hierarchic organisation and classification of document collections 10.1023/A:1013677411002
A common neural-network model for unsupervised exploratory data analysis and independent component analysis 10.1109/72.728398
Combining feature spaces for classification 10.1016/j.patcog.2009.04.002
Burglary in London: insights from statistical heterogeneous spatial point processes 10.1111/rssc.12431
Fast extraction of semantic features from a latent semantic indexed text corpus 10.1023/A:1013801028884
A digital twin of bridges for structural health monitoring 10.12783/shm2019/32287
Class Prediction from Disparate Biological Data Sources Using an Iterative Multi-Kernel Algorithm 10.1007/978-3-642-04031-3_37
Sequential activity profiling: Latent dirichlet allocation of Markov chains 10.1007/s10618-005-0362-2
Analysing User Behaviour Through Dynamic Population Models 10.1145/2468356.2468405
Embedded ridge approximations 10.1016/j.cma.2020.113383
A unifying information-theoretic framework for independent component analysis 10.1016/S0898-1221(00)00101-2
Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species 10.1126/scisignal.2000517
Markov chain monte carlo methods for state-space models with point process observations 10.1162/NECO_a_00281
An empirical analysis of the probabilistic K-nearest neighbour classifier 10.1016/j.patrec.2007.05.018
A probabilistic hierarchical clustering method for organising collections of text documents 10.1109/ICPR.2000.906043
On the geometric ergodicity of Hamiltonian Monte Carlo 10.3150/18-BEJ1083
EWS-FLI1 employs an E2F switch to drive target gene expression 10.1093/nar/gkv123
Comment on article by Schmidl et al. 10.1214/13-BA801B
Riemann manifold Langevin and Hamiltonian Monte Carlo methods 10.1111/j.1467-9868.2010.00765.x
Erratum: Bayesian ranking of biochemical system models (Bioinformatics (2008) vol. 24(6) (833-839)) 10.1093/bioinformatics/btn475
Probabilistic multi-class multi-kernel learning: On protein fold recognition and remote homology detection 10.1093/bioinformatics/btn112
Solving large-scale PDE-constrained Bayesian inverse problems with Riemann manifold Hamiltonian Monte Carlo 10.1088/0266-5611/30/11/114014
Geometry and Dynamics for Markov Chain Monte Carlo 10.1146/annurev-statistics-031017-100141
Decoding post-stroke motor function from structural brain imaging 10.1016/j.nicl.2016.07.014
A temporal model of linear anti-Hebbian learning 10.1007/BF00426022
MCMC_CLIB-an advanced MCMC sampling package for ODE models 10.1093/bioinformatics/btu429
Systems biology: Opening new avenues in clinical research 10.1093/ndt/gfq033
Clustering via kernel decomposition 10.1109/TNN.2005.860840
Bayesian probabilistic numerical methods 10.1137/17M1139357
Statistical analysis of nonlinear dynamical systems using differential geometric sampling methods 10.1098/rsfs.2011.0051
Semi-supervised prediction of protein interaction sentences exploiting semantically encoded metrics 10.1007/978-3-642-04031-3_24
A comparative evaluation of stochastic-based inference methods for Gaussian process models 10.1007/s10994-013-5388-x
Classification of protein interaction sentences via gaussian Processes 10.1007/978-3-642-04031-3_25
Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species (Science Signaling (2010) 3, (er8)) 10.1126/scisignal.3134er8
Addressing the Challenge of Defining Valid Proteomic Biomarkers and Classifiers 10.1186/1471-2105-11-594
Hierarchic bayesian models for kernel learning 10.1145/1102351.1102382
Convergence rates for a class of estimators based on Stein’s method 10.3150/17-BEJ1016
Probabilistic integration: A role in statistical computation? 10.1214/18-STS660
A variational method for learning sparse and overcomplete representations 10.1162/089976601753196003
Analysis of free text in electronic health records for identification of cancer patient trajectories 10.1038/srep46226
Uncovering smartphone usage patterns with multi-view mixed membership models 10.1002/sta4.103
Protein interaction detection in sentences via gaussian processes: A preliminary evaluation 10.1504/IJDMB.2011.038577
The topographic organization and visualization of binary data using multivariate-Bernoulli latent variable models 10.1109/72.963773
Bat detective—Deep learning tools for bat acoustic signal detection 10.1371/journal.pcbi.1005995
The Latent Variable Data Model for Exploratory Data Analysis and Visualisation: A Generalisation of the Nonlinear Infomax Algorithm 10.1023/A:1009613012282
Naturally occurring human urinary peptides for use in diagnosis of chronic kidney disease 10.1074/mcp.M110.001917
An extended exploratory projection pursuit network with linear and nonlinear anti-hebbian lateral connections applied to the cocktail party problem 10.1016/S0893-6080(97)00090-7
The Controlled Thermodynamic Integral for Bayesian Model Evidence Evaluation 10.1080/01621459.2015.1021006
Orthogonal series density estimation and the kernel eigenvalue problem 10.1162/089976602317250942
vbmp: Variational Bayesian Multinomial Probit Regression for multi-class classification in R 10.1093/bioinformatics/btm535
Symmetric adaptive maximum likelihood estimation for noise cancellation and signal separation 10.1049/el:19970977
The geometric foundations of Hamiltonian Monte Carlo 10.3150/16-BEJ810
Accurate prediction of BRCA1 and BRCA2 heterozygous genotype using expression profiling after induced DNA damage 10.1158/1078-0432.CCR-05-2805
A Bayesian regression approach to the inference of regulatory networks from gene expression data 10.1093/bioinformatics/bti487
Statistical methods to enable practical on-site tomographic imaging of whole-core samples 10.1190/geo2018-0436.1
Bayesian ranking of biochemical system models 10.1093/bioinformatics/btm607
Efficiency and robustness in Monte Carlo sampling for 3-D geophysical inversions with Obsidian v0.1.2: Setting up for success 10.5194/gmd-12-2941-2019
Bayesian inference for differential equations 10.1016/j.tcs.2008.07.005
Regulation of post-Golgi LH3 trafficking is essential for collagen homeostasis 10.1038/ncomms12111
Pattern recognition with a Bayesian kernel combination machine 10.1016/j.patrec.2008.08.016
Kernel PCA for feature extraction and de-noising in nonlinear regression 10.1007/s521-001-8051-z
A combined latent class and trait model for the analysis and visualization of discrete data 10.1109/34.946989
The silicon trypanosome 10.1017/S0031182010000466
Using higher-order dynamic bayesian networks to model periodic data from the circadian clock of arabidopsis thaliana 10.1007/978-3-642-04031-3_7
The latent process decomposition of cDNA microarray data sets 10.1109/TCBB.2005.29
Editorial: special edition on probabilistic numerics 10.1007/s11222-019-09892-y
The Silicon Trypanosome. A Test Case of Iterative Model Extension in Systems Biology. 10.1016/B978-0-12-800143-1.00003-8
Probabilistic hyperspace analogue to language 10.1145/1076034.1076135
Posterior inference for sparse hierarchical non-stationary models 10.1016/j.csda.2020.106954
Disease classification from capillary electrophoresis: Mass spectrometry 10.1007/11551188_20
Geometric MCMC for infinite-dimensional inverse problems 10.1016/j.jcp.2016.12.041
Rejoinder: Probabilistic integration: A role in statistical computation? 10.1214/18-STS683
ITFoM - The IT future of medicine 10.1016/j.procs.2011.12.012
Multiclass relevance vector machines: Sparsity and accuracy 10.1109/TNN.2010.2064787
Adaptive support vector regression filter: A signal detection application 10.1049/cp:19991176
An assessment of feature relevance in predicting protein function from sequence 10.1007/978-3-540-28651-6_8
On an Equivalence between PLSI and LDA 10.1145/860435.860537
Bayesian uncertainty quantification for transmissibility of influenza, norovirus and Ebola using information geometry 10.1098/rsif.2016.0279
Systems biology to battle vascular disease 10.1093/ndt/gfq025
Bayesian approaches for mechanistic ion channel modeling 10.1007/978-1-62703-450-0-13
Special Issue: Big data and predictive computational modeling 10.1016/j.jcp.2016.03.028
Markov Chain Monte Carlo from Lagrangian Dynamics 10.1080/10618600.2014.902764
Putting the Scientist in the Loop - Accelerating Scientific Progress with Interactive Machine Learning 10.1109/ICPR.2014.12
Probabilistic assignment of formulas to mass peaks in metabolomics experiments 10.1093/bioinformatics/btn642
Online learning with (multiple) kernels: A review 10.1162/NECO_a_00406
Zero variance differential geometric markov chain monte carlo algorithms 10.1214/13-BA848
Advances in urinary proteome analysis and biomarker discovery 10.1681/ASN.2006090956
A nonlinear model of the binaural cocktail party effect 10.1016/S0925-2312(98)00058-7
On the use of diagonal and class-dependent weighted distances for the probabilistic k-nearest neighbor 10.1007/978-3-642-21257-4_33
Information-Geometric Markov chain Monte Carlo methods using diffusions 10.3390/e16063074
Topic identification in dynamical text by complexity pursuit 10.1023/A:1022990829563
Quantification of functionalised gold nanoparticle-targeted knockdown of gene expression in HeLa cells 10.1371/journal.pone.0099458
BRCA1 and BRCA2 missense variants of high and low clinical significance influence lymphoblastoid cell line post-irradiation gene expression 10.1371/journal.pgen.1000080
Preferential Attachment of Specific Fluorescent Dyes and Dye Labeled DNA Sequences in a Surface Enhanced Raman Scattering Multiplex 10.1021/acs.analchem.5b02776
Emulation of higher-order tensors in manifold Monte Carlo methods for Bayesian Inverse Problems 10.1016/j.jcp.2015.12.032
Probability density estimation from optimally condensed data samples 10.1109/TPAMI.2003.1233899
Probabilistic numerical methods for PDE-constrained Bayesian inverse problems 10.1063/1.4985359
Uncertainty quantification of density and stratification estimates with implications for predicting ocean dynamics 10.1175/JTECH-D-18-0200.1
On Russian Roulette estimates for Bayesian inference with doubly-intractable likelihoods 10.1214/15-STS523
Multi-fidelity approach to Bayesian parameter estimation in subsurface heat and fluid transport models 10.1016/j.scitotenv.2020.140846
Langevin diffusions and the Metropolis-adjusted Langevin algorithm 10.1016/j.spl.2014.04.002
Geodesic Monte Carlo on embedded manifolds 10.1111/sjos.12036
Classifying EEG for brain computer interfaces using Gaussian processes 10.1016/j.patrec.2007.10.009
Employing Latent Dirichlet Allocation for fraud detection in telecommunications 10.1016/j.patrec.2007.04.015
Employing optimized combinations of one-class classifiers for automated currency validation 10.1016/j.patcog.2004.02.002
Predictive response-relevant clustering of expression data provides insights into disease processes 10.1093/nar/gkq550
Recommendations for biomarker identification and qualification in clinical proteomics 10.1126/scitranslmed.3001249
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models 10.1093/bioinformatics/btn553
Independent component analysis using an extended infomax algorithm for mixed subgaussian and supergaussian sources 10.1162/089976699300016719
The role of statistics in data-centric engineering 10.1016/j.spl.2018.02.035
Stochastic modelling of urban Structure 10.1098/rspa.2017.0700
Inferring sparse kernel combinations and relevance vectors: An application to subcellular localization of proteins 10.1109/ICMLA.2008.124
Variational Bayesian multinomial probit regression with gaussian process priors 10.1162/neco.2006.18.8.1790
A dynamic probabilistic model to visualise topic evolution in text streams 10.1023/A:1013673310093
Mercer kernel-based clustering in feature space 10.1109/TNN.2002.1000150
The synthesis of data from instrumented structures and physics-based models via Gaussian processes 10.1016/j.jcp.2019.04.065
Control functionals for Monte Carlo integration 10.1111/rssb.12185
Contribution by M. A. Girolami 10.1214/13-STS459
Pseudo-marginal Bayesian inference for Gaussian processes 10.1109/TPAMI.2014.2316530
Bat echolocation call identification for biodiversity monitoring: a probabilistic approach 10.1111/rssc.12217
Bayesian solution uncertainty quantification for differential equations 10.1214/16-BA1017
Semi-parametric analysis of multi-rater data 10.1007/s11222-009-9125-z
Bayesian Statistical Inference in Ion-Channel Models with Exact Missed Event Correction 10.1016/j.bpj.2016.04.053
Non-parametric Bayes to infer playing strategies adopted in a population of mobile gamers 10.1002/sta4.75
Infinite factorization of multiple non-parametric views 10.1007/s10994-009-5155-1
Bayesian model-based inference of transcription factor activity 10.1186/1471-2105-8-S2-S2
Bayesian methods to detect dye-labelled DNA oligonucleotides in multiplexed Raman spectra 10.1111/j.1467-9876.2010.00744.x
Analysis of complex, multidimensional datasets 10.1016/j.ddtec.2006.03.010
Unique Reporter-Based Sensor Platforms to Monitor Signalling in Cells 10.1371/journal.pone.0050521
An expectation-maximization approach to nonlinear component analysis 10.1162/089976601300014439
Construction with digital twin information systems 10.1017/dce.2020.16
Statistical finite elements for misspecified models 10.1073/pnas.2015006118
Digital twin of an urban-integrated hydroponic farm 10.1017/dce.2020.21
Anomaly detection in a fleet of industrial assets with hierarchical statistical modeling 10.1017/dce.2020.19
Scaling digital twins from the artisanal to the industrial 10.1038/s43588-021-00072-5
Integration in reproducing kernel Hilbert spaces of Gaussian kernels 10.1090/mcom/3659
PeriPy - A high performance OpenCL peridynamics package 10.1016/j.cma.2021.114085
Rainer Breitling
Breitling Rainer
ORCID: 0000-0001-7173-0922
Synthetic biology advances for pharmaceutical production 10.1016/j.copbio.2015.02.004
Judging synthetic biology risks 10.1126/science.aaa5253
Theridion zonulatum Thorell 1890, a senior synonym of Theridion zebrinusum Zhu 1998 10.2476/asjaa.63.79
Probing the Metabolic Network in Bloodstream-Form Trypanosoma brucei Using Untargeted Metabolomics with Stable Isotope Labelled Glucose 10.1371/journal.ppat.1004689
TrypanoCyc: A community-led biochemical pathways database for Trypanosoma brucei 10.1093/nar/gku944
A fast algorithm for determining bounds and accurate approximate -values of the rank product statistic for replicate experiments 10.1186/s12859-014-0367-1
Metabolomic systems biology of protozoan parasites 10.1007/978-1-4614-1689-0_6
Synthetic Biology of Natural Products 10.1002/9781118794623.ch19
Stable isotope-labeling studies in metabolomics: New insights into structure and dynamics of metabolic networks 10.4155/bio.13.348
Steps towards the synthetic biology of polyketide biosynthesis 10.1111/1574-6968.12365
MetAssign: Probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach 10.1093/bioinformatics/btu370
The Silicon Trypanosome. A Test Case of Iterative Model Extension in Systems Biology. 10.1016/B978-0-12-800143-1.00003-8
Phosphoenolpyruvate Carboxylase Identified as a Key Enzyme in Erythrocytic Plasmodium falciparum Carbon Metabolism 10.1371/journal.ppat.1003876
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products 10.1371/journal.pcbi.1003822
Handling Uncertainty in Dynamic Models: The Pentose Phosphate Pathway in Trypanosoma brucei 10.1371/journal.pcbi.1003371
Design-based re-engineering of biosynthetic gene clusters: Plug-and-play in practice 10.1016/j.copbio.2013.03.006
Metabolic adaptations of Leishmania donovani in relation to differentiation, drug resistance, and drug pressure 10.1111/mmi.12374
Explicit consideration of topological and parameter uncertainty gives new insights into a well-established model of glycolysis 10.1111/febs.12436
Modeling challenges in the synthetic biology of secondary metabolism 10.1021/sb4000228
Natural products: Tools and more special issue 10.1021/sb400063n
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers. 10.1093/nar/gkt449
Detecting sequence homology at the gene cluster level with multigeneblast 10.1093/molbev/mst025
The exact probability distribution of the rank product statistics for replicated experiments 10.1016/j.febslet.2013.01.037
Mass appeal: Metabolite identification in mass spectrometry-focused untargeted metabolomics 10.1007/s11306-012-0434-4
Synthetic microbiology. Metabolic pathways from the drawing board: New approaches of the biochemistry of natural products | Stoffwechselwege vom Reißbrett: neue Ansätze der Naturstoffbiochemie: Synthetische Mikrobiologie 10.1007/s12268-013-0267-3
MzMatch-ISO: An R tool for the annotation and relative quantification of isotope-labelled mass spectrometry data 10.1093/bioinformatics/bts674
LC-MS metabolomics from study design to data-analysis-using a versatile pathogen as a test case 10.5936/csbj.201301002
MultiMetEval: Comparative and Multi-Objective Analysis of Genome-Scale Metabolic Models 10.1371/journal.pone.0051511
Selection of a highly invasive neuroblastoma cell population through long-term human cytomegalovirus infection 10.1038/oncsis.2012.10
Stable isotope-assisted metabolomics for network-wide metabolic pathway elucidation 10.1021/ac3018795
Effect of iTRAQ labeling on the relative abundance of peptide fragment ions produced by MALDI-MS/MS 10.1021/pr300083x
Metabolomics methods for the synthetic biology of secondary metabolism 10.1016/j.febslet.2012.02.008
Separating the wheat from the chaff: A prioritisation pipeline for the analysis of metabolomics datasets 10.1007/s11306-011-0341-0
msCompare: A framework for quantitative analysis of label-free LC-MS data for comparative candidate biomarker studies 10.1074/mcp.M111.015974
Human neuroblastoma cells with acquired resistance to the p53 activator RITA retain functional p53 and sensitivity to other p53 activating agents 10.1038/cddis.2012.35
IDEOM: An Excel interface for analysis of LC-MS-based metabolomics data 10.1093/bioinformatics/bts069
A turning point for natural product discovery--ESF-EMBO research conference: synthetic biology of antibiotic production. 10.1111/j.1365-2958.2012.07984.x
Computational tools for the synthetic design of biochemical pathways 10.1038/nrmicro2717
Dynamic modelling under uncertainty: The case of trypanosoma brucei energy metabolism 10.1371/journal.pcbi.1002352
Adaptation of cancer cells from different entities to the MDM2 inhibitor nutlin-3 results in the emergence of p53-mutated multi-drug-resistant cancer cells 10.1038/cddis.2011.129
Metabolomic analysis of a synthetic metabolic switch in Streptomyces coelicolor A3(2) 10.1002/pmic.201100254
Toward global metabolomics analysis with hydrophilic interaction liquid chromatography-mass spectrometry: Improved metabolite identification by retention time prediction 10.1021/ac2021823
Exploring the metabolic state of microorganisms using metabolomics 10.4155/bio.11.248
Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor 10.1186/1756-0500-4-325
Bayesian Approaches for Mass Spectrometry-Based Metabolomics 10.1002/9781119970606.ch24
Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism 10.1016/j.febslet.2011.06.014
AntiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences 10.1093/nar/gkr466
Physiological adaptation of the bacterium lactococcus lactis in response to the production of human CFTR 10.1074/mcp.M000052-MCP200
Supervisor's supporting comments 10.4155/bio.11.96
Synthetic biology in streptomyces bacteria 10.1016/B978-0-12-385075-100021-4
PeakML/mzMatch: A file format, Java library, R library, and tool-chain for mass spectrometry data analysis 10.1021/ac2000994
Erratum: Towards an unbiased metabolic profiling of protozoan parasites: Optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis (Analytical and Bioanalytical Chemistry DOI: 10.1007/s00216-010-4139-0) 10.1007/s00216-011-4796-7
Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus 10.1111/j.1751-7915.2010.00226.x
Deletion of the signalling molecule synthase ScbA has pleiotropic effects on secondary metabolite biosynthesis, morphological differentiation and primary metabolism in Streptomyces coelicolor A3(2) 10.1111/j.1751-7915.2010.00232.x
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms 10.1038/nrmicro2478
What is systems biology? 10.3389/fphys.2010.00009
Apex peptide elution chain selection: A new strategy for selecting precursors in 2D-LC-MALDI-TOF/TOF experiments on complex biological samples 10.1021/pr1006944
Metabolomics to unveil and understand phenotypic diversity between pathogen populations 10.1371/journal.pntd.0000904
Towards an unbiased metabolic profiling of protozoan parasites: Optimisation of a Leishmania sampling protocol for HILIC-orbitrap analysis 10.1007/s00216-010-4139-0
The sequence of a 1.8-Mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways 10.1093/gbe/evq013
DiffCoEx: A simple and sensitive method to find differentially coexpressed gene modules 10.1186/1471-2105-11-497
Global genetic robustness of the alternative splicing machinery in Caenorhabditis elegans 10.1534/genetics.110.119677
The silicon trypanosome 10.1017/S0031182010000466
The potential of metabolomics for Leishmania research in the post-genomics era 10.1017/S0031182009992022
Metabolomic systems biology of trypanosomes 10.1017/S003118201000017X
A circuit model of the temporal pattern generator of Caenorhabditis egg-laying behavior 10.1186/1752-0509-4-81
Biomodel engineering - From structure to behavior 10.1007/978-3-642-11712-1_1
Metabolomic characterization of the salt stress response in streptomyces coelicolor 10.1128/AEM.01992-09
Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor 10.1186/1471-2164-11-202
Coronatine-insensitive 1 (COI1) mediates transcriptional responses of Arabidopsis thaliana to external potassium supply 10.1093/mp/ssq012
Genome-based phylogenetic analysis of Streptomyces and its relatives 10.1016/j.ympev.2009.11.019
Anti-cancer effects of artesunate in a panel of chemoresistant neuroblastoma cell lines 10.1016/j.bcp.2009.08.013
The dynamic architecture of the metabolic switch in Streptomyces coelicolor 10.1186/1471-2164-11-10
Neurodegenerative diseases: Lessons from genome-wide screens in small model organisms 10.1002/emmm.200900051
Expression quantitative trait loci are highly sensitive to cellular differentiation state 10.1371/journal.pgen.1000692
Chemoresistance acquisition induces a global shift of expression of aniogenesis-associated genes and increased pro-angogenic activity in neuroblastoma cells 10.1186/1476-4598-8-80
DesignGG: An R-package and web tool for the optimal design of genetical genomics experiments 10.1186/1471-2105-10-188
An introduction to BioModel engineering, illustrated for signal transduction pathways 10.1007/978-3-540-95885-7_2
System-wide molecular evidence for phenotypic buffering in Arabidopsis 10.1038/ng.308
The yeast vacuolar membrane proteome 10.1074/mcp.M800372-MCP200
Probabilistic assignment of formulas to mass peaks in metabolomics experiments 10.1093/bioinformatics/btn642
Robust signaling networks of the adipose secretome 10.1016/j.tem.2008.08.006
Simple data-reduction method for high-resolution LC - MS data in metabolomics 10.4155/bio.09.146
Increasing the mass accuracy of high-resolution LC-MS data using background ions - A case study on the LTQ-Orbitrap 10.1002/pmic.200800314
Prosecutor: Parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources 10.1186/1471-2164-9-495
Generalizing genetical genomics: getting added value from environmental perturbation 10.1016/j.tig.2008.08.001
Genetical genomics: Spotlight on QTL hotspots 10.1371/journal.pgen.1000232
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways 10.1093/bib/bbn026
C. elegans model identifies genetic modifiers of α-synuclein inclusion formation during aging 10.1371/journal.pgen.1000027
New surveyor tools for charting microbial metabolic maps 10.1038/nrmicro1797
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments 10.1093/bioinformatics/btm620
MetaNetter: Inference and visualization of high-resolution metabolomic networks 10.1093/bioinformatics/btm536
Greased hedgehogs: New links between hedgehog signaling and cholesterol metabolism 10.1002/bies.20663
Analyses of intricate kinetics of the serum proteome during and after colon surgery by protein expression time series 10.1002/pmic.200601047
Sequence polymorphisms cause many false cis eQTLs 10.1371/journal.pone.0000622
Microarray challenges in ecology 10.1016/j.tree.2007.01.013
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes 10.1093/bioinformatics/btl658
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat 10.1186/1471-2105-8-132
Predicting protein function by machine learning on amino acid sequences - A critical evaluation 10.1186/1471-2164-8-78
Mapping determinants of gene expression plasticity by genetical genomics in C. elegans. 10.1371/journal.pgen.0020222
Precision mapping of the metabolome 10.1016/j.tibtech.2006.10.006
RankProd: A bioconductor package for detecting differentially expressed genes in meta-analysis 10.1093/bioinformatics/btl476
Ab initio prediction of metabolic networks using Fourier transform mass spectrometry data 10.1007/s11306-006-0029-z
Network theory to understand microarray studies of complex diseases 10.2174/156652406778195044
A lock-and-key model for protein-protein interactions 10.1093/bioinformatics/btl338
Biological microarray interpretation: The rules of engagement 10.1016/j.bbaexp.2006.06.003
Interspecies comparison of gene structure and computational analysis of gene regulation of 17beta-hydroxysteroid dehydrogenase type 1 10.1016/j.mce.2005.10.014
Regulation of ubiquitin-binding proteins by monoubiquitination 10.1038/ncb1354
Current challenges in quantitative modeling of epidermal growth factor signaling 10.1016/j.febslet.2005.10.034
Feature selection and the class imbalance problem in predicting protein function from sequence 10.2165/00822942-200594030-00004
Biological master games: Using biologists' reasoning to guide algorithm development for integrated functional genomics 10.1089/omi.2005.9.225
Rank-based methods as a non-parametric alternative of the t-statistic for the analysis of biological microarray data 10.1142/S0219720005001442
GeneRank: Using search engine technology for the analysis of microarray experiments 10.1186/1471-2105-6-233
FrankSum: New feature selection method for protein function prediction 10.1142/S0129065705000281
Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds 10.1186/1471-2105-6-181
The latent process decomposition of cDNA microarray data sets 10.1109/TCBB.2005.29
Inhibition of 17beta-hydroxysteroid dehydrogenases by phytoestrogens: Comparison with other steroid metabolizing enzymes 10.1016/j.jsbmb.2004.12.035
Biologically valid linear factor models of gene expressions 10.1093/bioinformatics/bth354
The potassium-dependent transcriptome of arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling 10.1104/pp.104.046482
Rank products: A simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments 10.1016/j.febslet.2004.07.055
Graph-based iterative group analysis enhances microarray interpretation 10.1186/1471-2105-5-100
Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments 10.1186/1471-2105-5-34
Pathogenesis of peroxisomal deficiency disorders (Zellweger syndrome) may be mediated by misregulation of the GABAergic system via the diazepam binding inhibitor 10.1186/1471-2431-4-5
Closing the gap: Identification of human 3-ketosteroid reductase, the last unknown enzyme of mammalian cholesterol biosynthesis 10.1210/me.2002-0436
Isopentenyl-diphosphate isomerases in human and mouse: Evolutionary analysis of a mammalian gene duplication 10.1007/s00239-003-2476-8
Embryonic expression of cholesterogenic genes is restricted to distinct domains and colocalizes with apoptotic regions in mice 10.1016/S0169-328X(03)00094-9
A second gene for peroxisomal HMG-CoA reductase? A genomic reassessment 10.1194/jlr.R200010-JLR200
Loss of compartmentalization causes misregulation of lysine biosynthesis in peroxisome-deficient yeast cells 10.1128/EC.1.6.978-986.2002
Expression of muscarinic receptor types in the primate ovary and evidence for nonneuronal acetylcholine synthesis 10.1210/jc.86.1.349
Phytoestrogens inhibit human 17β-hydroxysteroid dehydrogenase type 5 10.1016/S0303-7207(00)00422-6
17β-hydroxysteroid dehydrogenase type 7 - An ancient 3-ketosteroid reductase of cholesterogenesis 10.1016/S0303-7207(00)00416-0
Evolution of 17β-HSD type 4, a multifunctional protein of β-oxidation 10.1016/S0303-7207(00)00415-9
Origin of the paired domain 10.1007/s004270000106
Determination of cDNA, gene structure and chromosomal localization of the novel human 17β-hydroxysteroid dehydrogenase type 7 10.1016/S0014-5793(99)01366-6
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters. 10.1093/nar/gkv437
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. 10.1093/bioinformatics/btv072
A fast algorithm for determining bounds and accurate approximate p-values of the rank product statistic for replicate experiments. 10.1186/PREACCEPT-1857144210135244
Metabolomics for secondary metabolite research. 10.3390/metabo3041076
Computational modelling of kinase signalling cascades. 10.1007/978-1-60761-795-2_22
Feature selection and the class imbalance problem in predicting protein function from sequence. 10.2165/00822942-200504030-00004
Structure-based phylogenetic analysis of short-chain alcohol dehydrogenases and reclassification of the 17beta-hydroxysteroid dehydrogenase family. 10.1093/oxfordjournals.molbev.a003761
Synthetic Biology of Antibiotic Production 10.1002/3527600906.mcb.20120052
Transactions on Computational Systems Biology XII 10.1007/978-3-642-11712-1
Computation: A New Open Access Journal of Computational Chemistry, Computational Biology and Computational Engineering 10.3390/computation1020027
The future of industrial antibiotic production: From random mutagenesis to synthetic biology 10.4161/bbug.2.4.16114
Discriminating Microbial Species Using Protein Sequence Properties and Machine Learning 10.1007/978-3-540-77226-2_89
Analysis of Tiling Microarray Data by Learning Vector Quantization and Relevance Learning 10.1007/978-3-540-77226-2_88
Bacterial Microcompartments: Biomaterials for Synthetic Biology-Based Compartmentalization Strategies 10.1021/acsbiomaterials.5b00059
Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans 10.1371/journal.pgen.0020222.eor
Towards synthesis of monoterpenes and derivatives using synthetic biology 10.1016/j.cbpa.2016.06.002
Respectful Modeling: Addressing Uncertainty in Dynamic System Models for Molecular Biology 10.1016/j.tibtech.2016.12.008
Rational cell culture optimization enhances experimental reproducibility in cancer cells 10.1101/167148
Selenzyme: Enzyme selection tool for pathway design 10.1101/188979
Butyrolactone signalling circuits for synthetic biology 10.1016/j.cbpa.2015.06.024
Synthetic biology of natural products 10.1101/cshperspect.a023994
Advanced LC-MS applications for identification and quantification of the metabolome 10.2217/9781910419441.fseb2013.14.55
Re Genotyper: Detecting mislabeled samples in genetic data 10.1371/journal.pone.0171324
East meets west: On the true identity of cheiracanthium rupestre and xysticus albomaculatus (Arachnida: Araneae: Eutichuridae, Thomisidae) | Anmerkung zur wahren identität von cheiracanthium rupestre und xysticus albomaculatus (Arachnida: Araneae: Eutichuridae, Thomisidae) 10.5431/aramit5208
Phantom spiders 2: More notes on dubious spider species from Europe | Phantomspinnen 2: Weitere bemerkungen zu zweifelhaften spinnenarten aus Europa 10.5431/aramit5209
CodonGenie: Optimised ambiguous codon design tools 10.7717/peerj-cs.120
Public DNA barcoding data resolve the status of the genus Arboricaria (araneae: Gnaphosidae) | Öffentliche DNA-barcode-daten klären den Status der gattung arboricaria 10.5431/aramit5405
Bioinformatics for the synthetic biology of natural products: Integrating across the Design-Build-Test cycle 10.1039/c6np00018e
biochem4j: Integrated and extensible biochemical knowledge through graph databases 10.1371/journal.pone.0179130
SYNBIOCHEM - A SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicals 10.1042/BST20160009
Phantom spiders: Notes on dubious spider species from Europe | Zusammenfassung. Phantomspinnen: Bemerkungen zu zweifelhaften spinnenarten aus Europa 10.5431/aramit5010
AntiSMASH 4.0 - improvements in chemistry prediction and gene cluster boundary identification 10.1093/nar/gkx319
LC–MS-based absolute metabolite quantification: application to metabolic flux measurement in trypanosomes 10.1007/s11306-015-0827-2
A transatlantic perspective on 20 emerging issues in biological engineering 10.7554/eLife.30247
CodonGenie: optimised ambiguous codon design tools 10.7287/peerj.preprints.2797v1
CodonGenie: optimised ambiguous codon design tools 10.7287/peerj.preprints.2797
Rational cell culture optimization enhances experimental reproducibility in cancer cells 10.1038/s41598-018-21050-4
Translation Stress Positively Regulates MscL-Dependent Excretion of Cytoplasmic Proteins 10.1128/mBio.02118-17
Orthogonal Regulatory Circuits for Escherichia coli Based on the γ-Butyrolactone System of Streptomyces coelicolor 10.1021/acssynbio.7b00425
Mobilising ion mobility mass spectrometry for metabolomics 10.1039/C8AN00902C
Defining informative priors for ensemble modeling in systems biology 10.1038/s41596-018-0056-z
The “Three Cs” of Novel Antibiotic Discovery and Production through Synthetic Biology: Biosynthetic Gene Clusters, Heterologous Chassis, and Synthetic Microbial Consortia 10.1002/adbi.201800064
Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters 10.1038/s42003-019-0333-6
SelProm: A Queryable and Predictive Expression Vector Selection Tool for Escherichia coli 10.1021/acssynbio.8b00399
Integrated Probabilistic Annotation: A Bayesian-Based Annotation Method for Metabolomic Profiles Integrating Biochemical Connections, Isotope Patterns, and Adduct Relationships 10.1021/acs.analchem.9b02354
Bioengineering horizon scan 2020 10.7554/eLife.54489
Unravelling the γ-butyrolactone network in Streptomyces coelicolor by computational ensemble modelling 10.1371/journal.pcbi.1008039
Host Systems for the Production of Recombinant Spider Silk 10.1016/j.tibtech.2020.09.007
Towards engineering and production of artificial spider silk using tools of synthetic biology 10.1049/enb.2019.0017
Investigation of the effects of actinorhodin biosynthetic gene cluster expression and a rpoB point mutation on the metabolome of Streptomyces coelicolor M1146 10.1016/j.jbiosc.2021.01.002
A completely resolved phylogenetic tree of British spiders 10.1101/2021.03.12.434792
Blood, Sweat and Tears: Extraterrestrial Regolith Biocomposites with in Vivo Binders 10.26434/chemrxiv.14769369.v1
Blood, Sweat and Tears: Extraterrestrial Regolith Biocomposites with in Vivo Binders 10.26434/chemrxiv.14769369
Blood, sweat, and tears: extraterrestrial regolith biocomposites with in vivo binders 10.1016/j.mtbio.2021.100136
Summary of the Sussex-Huawei locomotion-transportation recognition challenge
Observation of a manifold in the chaotic phase space of an asymmetric optical microcavity
Localized temporal variation of Earth's inner-core boundary from high-quality waveform doublets
Off-axis multi-wavelength dispersion controlling metalens for multi-color imaging
Impact of United States political sanctions on international collaborations and research in Iran