Paperbase

Livio Antonielli

Antonielli Livio

ORCID: 0000-0002-7140-8359

Draft genome sequence of the root-colonizing fungus Trichoderma harzianum B97 10.1128/genomeA.00137-17

Candida coquimbonensis sp. nov., a link between Australian and Nearctic/Neotropical Phaffomyces 10.1099/ijs.0.045294-0

Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage 10.1038/s41598-017-02314-x

Interkingdom transfer of the acne-causing agent, propionibacterium acnes, from human to grapevine 10.1093/molbev/msu075

The draft genome sequence of Paenibacillus polymyxa strain CCI-25 encompasses high potential for secondary metabolite production 10.1128/genomeA.00366-16

Influence of cell parameters in Fourier Transform InfraRed spectroscopy analysis of whole yeast cells 10.1039/c0an00515k

Leaf treatments with a protein-based resistance inducer partially modify phyllosphere microbial communities of grapevine 10.3389/fpls.2016.01053

Influence of cell geometry and number of replicas in the reproducibility of whole cell FTIR analysis 10.1039/c0an00127a

A new approach to modify plant microbiomes and traits by introducing beneficial bacteria at flowering into progeny seeds 10.3389/fmicb.2017.00011

Bacterial endophytic communities in the grapevine depend on pest management 10.1371/journal.pone.0112763

Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants 10.1111/1462-2920.13618

Yamadazyma terventina sp. nov., a yeast species of the Yamadazyma clade from Italian olive oils 10.1099/ijs.0.045898-0

Effect of pH on potassium metabisulphite biocidic activity against yeast and human cell cultures 10.1016/j.foodchem.2012.03.025

Agromyces aureus sp. nov., isolated from the rhizosphere of Salix caprea L. grown in a heavy-metal-contaminated soil 10.1099/ijsem.0.001260

Resilience of the natural phyllosphere microbiota of the grapevine to chemical and biological pesticides 10.1128/AEM.00415-14

Gut microbiota dysbiosis associated with glucose metabolism disorders and the metabolic syndrome in older adults 10.3920/BM2016.0184

Draft genome sequence of Phaeomoniella chlamydospora strain RR-HG1, a grapevine trunk disease (esca)-related member of the Ascomycota 10.1128/genomeA.00098-14

Taxonomic structure of the yeasts and lactic acid bacteria microbiota of pineapple (Ananas comosus L. Merr.) and use of autochthonous starters for minimally processing 10.1016/j.fm.2009.11.012

Draft genome sequences of 10 Microbacterium spp., with emphasis on heavy metalcontaminated environments 10.1128/genomeA.00432-15

Preliminary prospection of the yeast biodiversity on apple and pear surfaces from Northern Italy orchards 10.1007/s13213-011-0220-y

Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake 10.1016/j.soilbio.2015.08.038

Correction: Compant et al., "Draft genome sequence of the root-colonizing fungus Trichoderma harzianum B97" [Genome Announc, 5, 13, (2017) (e00137-17)] https://doi.org/10.1128/genomeA.00137-17 10.1128/genomeA.00549-17

Soil microbiota respond to green manure in organic vineyards 10.1111/jam.13606

Complete genome sequence of the heavy metal resistant bacterium Agromyces aureus AR33^Tand comparison with related Actinobacteria 10.1186/s40793-016-0217-z

Effect of different heterotrophic plate count methods on the estimation of the composition of the culturable microbial community 10.7717/peerj.862

High-quality draft genome sequence of an endophytic Pseudomonas viridiflava strain with herbicidal properties against its host, the weed Lepidium draba L 10.1128/genomeA.01170-16

Kazachstania ichnusensis sp. nov., a diploid homothallic ascomycetous yeast from Sardinian lentisk rhizosphere 10.1099/ijs.0.032243-0

The lactic acid bacteria and yeast microbiota of eighteen sourdoughs used for the manufacture of traditional Italian sweet leavened baked goods 10.1016/j.ijfoodmicro.2013.02.010

Lactic acid bacterium and yeast microbiotas of 19 sourdoughs used for traditional/typical Italian breads: Interactions between ingredients and microbial species diversity 10.1128/AEM.07721-11

Ram Vinay Pandey

Pandey Ram Vinay

ORCID: 0000-0002-2533-8687

Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes. 10.3389/fmicb.2018.01290

DaMold: A data-mining platform for variant annotation and visualization in molecular diagnostics research. 10.1002/humu.23227

Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage. 10.1038/s41598-017-02314-x

MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics. 10.1186/s13148-016-0269-3

Erratum to: MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research. 10.1186/s13148-016-0250-1

MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research. 10.1186/s13148-016-0190-9

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics. 10.1371/journal.pone.0147697

ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research. 10.1186/s12859-016-0915-y

BIFI: a Taverna plugin for a simplified and user-friendly workflow platform. 10.1186/1756-0500-7-740

Nothing special in the specialist? Draft genome sequence of Cryomyces antarcticus, the most extremophilic fungus from Antarctica. 10.1371/journal.pone.0109908

Experimental evolution reveals habitat-specific fitness dynamics among Wolbachia clades in Drosophila melanogaster. 10.1111/mec.12643

Intra-specific regulatory variation in Drosophila pseudoobscura. 10.1371/journal.pone.0083547

DistMap: a toolkit for distributed short read mapping on a Hadoop cluster. 10.1371/journal.pone.0072614

Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data. 10.1111/1755-0998.12110

Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana. 10.1101/gr.139873.112

Detecting selective sweeps from pooled next-generation sequencing samples. 10.1093/molbev/mss090

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). 10.1093/bioinformatics/btr589

Novel advances in cytochrome P450 research. 10.1016/j.drudis.2011.08.003

CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies. 10.1186/1756-0500-4-227

PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila. 10.1186/1471-2156-12-27

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. 10.1371/journal.pone.0015925

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity. 10.1111/j.1365-294x.2010.04669.x

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms. 10.1111/j.1365-294x.2009.04478.x

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies. 10.1186/1756-0500-3-3

Anti-Apoptotic Molecule BCL2 Is a Therapeutic Target in Steroid-Refractory Graft-Versus-Host Disease. 10.1016/j.jid.2020.02.029

A discrete subset of epigenetically primed human NK cells mediates antigen-specific immune responses. 10.1126/sciimmunol.aba6232

Long-term skin-resident memory T cells proliferate in situ and are involved in human graft-versus-host disease. 10.1126/scitranslmed.abb7028

Gajender Aleti

Aleti Gajender

ORCID: 0000-0002-1867-9758

Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease 10.1128/mbio.00321-19

Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage 10.1038/s41598-017-02314-x

Microbe and plant assisted-remediation of organic xenobiotics and its enhancement by genetically modified organisms and recombinant technology: A review 10.1016/j.scitotenv.2018.02.037

The draft genome sequence of Paenibacillus polymyxa strain CCI-25 encompasses high potential for secondary metabolite production 10.1128/genomeA.00366-16

Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression 10.1016/j.ydbio.2011.04.030

Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis 10.3389/fimmu.2019.02602

Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages 10.1016/j.foodchem.2019.125290

Qualitative analysis of biosurfactants from Bacillus species exhibiting antifungal activity 10.1371/journal.pone.0198107

Surfactin variants mediate species-specific biofilm formation and root colonization in Bacillus 10.1111/1462-2920.13405

Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults 10.1016/j.bbi.2020.02.004

Correction: Qualitative analysis of biosurfactants from Bacillus species exhibiting antifungal activity(PLoS ONE (2018) 13:6 (e0198107) DOI: 10.1371/journal.pone.0198107) 10.1371/journal.pone.0201624

Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes 10.1016/j.csbj.2015.03.003

A community resource for paired genomic and metabolomic data mining. 10.1038/s41589-020-00724-z

Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma. 10.1007/s00248-020-01596-5

ReDU: a framework to find and reanalyze public mass spectrometry data. 10.1038/s41592-020-0916-7

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides 10.1101/2021.08.10.21255754