Global chemical analysis of biology by mass spectrometry
Aksenov, Alexander A. da Silva, Ricardo Knight, Rob Lopes, Norberto P. Dorrestein, Pieter C.
Nature Reviews Chemistry, 2017
https://doi.org/10.1038/s41570-017-0054
Rob Knight
Knight Rob
ORCID: 0000-0002-0975-9019
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. 10.1038/nbt.3893
Current understanding of the human microbiome. 10.1038/nm.4517
Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California. 10.1080/19490976.2021.1961203
Insight into the function and evolution of the Wood-Ljungdahl pathway in Actinobacteria. 10.1038/s41396-021-00935-9
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. 10.1101/2020.11.13.370387
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. 10.1101/2020.08.17.238444
Methods for phylogenetic analysis of microbiome data. 10.1038/s41564-018-0156-0
Publisher Correction: Enterotypes in the landscape of gut microbial community composition. 10.1038/s41564-018-0114-x
Enterotypes in the landscape of gut microbial community composition. 10.1038/s41564-017-0072-8
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. 10.1371/journal.pcbi.1009056
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes. 10.1101/gr.275777.121
Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence. 10.1101/2021.07.16.452756
Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. 10.1038/s41396-021-01016-7
Structure-based protein function prediction using graph convolutional networks. 10.1038/s41467-021-23303-9
Challenges in benchmarking metagenomic profilers. 10.1038/s41592-021-01141-3
Taxonomic signatures of cause-specific mortality risk in human gut microbiome. 10.1038/s41467-021-22962-y
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. 10.1111/biom.13481
Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition. 10.1128/msystems.01329-20
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications 10.1038/nbt.1823
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. 10.4056/aigs.1443528
Origins of the genetic code: The escaped triplet theory 10.1146/annurev.biochem.74.082803.133119
Defining the human microbiome 10.1111/j.1753-4887.2012.00493.x
Dietary prebiotics and bioactive milk fractions improve NREM sleep, enhance REM sleep rebound and attenuate the stress-induced decrease in diurnal temperature and gut microbial alpha diversity 10.3389/fnbeh.2016.00240
Meta-analyses of human gut microbes associated with obesity and IBD 10.1016/j.febslet.2014.09.039
Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations 10.1128/mBio.01526-14
Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment 10.1145/1646468.1646481
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill 10.1038/ismej.2013.254
Meeting report for the 1st skin microbiota workshop, boulder, co October 15-16 2012 10.1186/1944-3277-9-13
Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk 10.1017/S0007114516004165
Host remodeling of the gut microbiome and metabolic changes during pregnancy 10.1016/j.cell.2012.07.008
A distinct immunogenic region of glutamic acid decarboxylase 65 is naturally processed and presented by human islet cells to cytotoxic CD8 T cells 10.1111/cei.12436
Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities 10.1128/AEM.01996-06
Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation 10.1073/pnas.0902366106
A population of Pax7-expressing muscle progenitor cells show differential responses to muscle injury dependent on developmental stage and injury extent 10.3389/fnagi.2015.00161
Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch 10.1016/j.jmb.2013.02.023
Authors' reply to Mawer and Wilcox and Mullish and Williams 10.1136/bmj.h6132
The bacterial microbiota in the oral mucosa of rural Amerindians 10.1099/mic.0.043174-0
Selection, history and chemistry: The three faces of the genetic code 10.1016/S0968-0004(99)01392-4
Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species 10.1007/s00442-015-3507-z
Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems 10.1890/10-0426.1
Specification of sensory neurons occurs through diverse developmental programs functioning in the brain and spinal cord 10.1002/dvdy.24184
Ghost-tree: Creating hybrid-gene phylogenetic trees for diversity analyses 10.1186/s40168-016-0153-6
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges 10.1101/gr.085464.108
Tfap2 transcription factors in zebrafish neural crest development and ectodermal evolution 10.1002/jez.b.21189
Direct sequencing of the human microbiome readily reveals community differences 10.1186/gb-2010-11-5-210
Human gut microbiome viewed across age and geography 10.1038/nature11053
Sources of bacteria in outdoor air across cities in the midwestern United States 10.1128/AEM.05498-11
Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity 10.3389/fmicb.2014.00298
Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice 10.1053/j.gastro.2013.01.047
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment 10.1111/1462-2920.12539
How delivery mode and feeding can shape the bacterial community in the infant gut 10.1503/cmaj.130147
Moving pictures of the human microbiome 10.1186/gb-2011-12-5-r50
Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010 10.4056/sigs.1333437
The impact of the gut microbiota on human health: An integrative view 10.1016/j.cell.2012.01.035
Forensic identification using skin bacterial communities 10.1073/pnas.1000162107
Which is more important for classifying microbial communities: Who's there or what they can do? 10.1038/ismej.2014.157
Comparison of fecal collection methods for microbiota studies in Bangladesh 10.1128/AEM.00361-17
Using the gut microbiota as a novel tool for examining colobine primate GI health 10.1016/j.gecco.2016.06.004
Lifestyle chemistries from phones for individual profiling 10.1073/pnas.1610019113
The ecology of the phyllosphere: Geographic and phylogenetic variability in the distribution of bacteria on tree leaves 10.1111/j.1462-2920.2010.02258.x
Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins 10.1073/pnas.1000071108
Metabolie syndrome and altered gut microbiota in mice lacking toll-like receptor 5 10.1126/science.1179721
A Microbiome Foundation for the Study of Crohn's Disease 10.1016/j.chom.2017.02.012
Comparison of collection methods for fecal samples for discovery metabolomics in epidemiologic studies 10.1158/1055-9965.EPI-16-0409
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories 10.1261/rna.2183806
Bacterial phylogeny structures soil resistomes across habitats 10.1038/nature13377
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences 10.1038/ismej.2011.208
Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes 10.1111/1462-2920.13684
Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice 10.1016/j.chom.2012.07.004
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers 10.1093/nar/gkn491
Evolution of mammals and their gut microbes 10.1126/science.1155725
Vertebrate genome evolution: A slow shuffle or a big bang? 10.1002/(SICI)1521-1878(199908)21:8<697::AID-BIES9>3.0.CO;2-X
Biogeography and habitat modelling of high-alpine bacteria 10.1038/ncomms1055
Vertebrate hosts as Islands: Dynamics of selection, immigration, loss, persistence, and potential function of bacteria on salamander skin 10.3389/fmicb.2016.00333
MIxS-BE: A MIxS extension defining a minimum information standard for sequence data from the built environment 10.1038/ismej.2013.176
Finding specific RNA motifs: Function in a zeptomole world? 10.1261/rna.2138803
Skin bacteria provide early protection for newly metamorphosed southern leopard frogs (Rana sphenocephala) against the frog-killing fungus, Batrachochytrium dendrobatidis 10.1016/j.biocon.2015.04.007
Convergence of gut microbiomes in myrmecophagous mammals 10.1111/mec.12501
Changes through time: Integrating microorganisms into the study of succession 10.1016/j.resmic.2010.06.002
Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples 10.1128/AEM.04137-13
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns 10.1038/nmeth.1499
The molecular basis of nuclear genetic code change in ciliates 10.1016/S0960-9822(01)00028-8
Using QIIME to analyze 16s rRNA gene sequences from microbial communities 10.1002/9780471729259.mc01e05s27
Culturing: Looking it up in our gut 10.1038/nmicrobiol.2016.169
Human oral, gut, and plaque microbiota in patients with atherosclerosis 10.1073/pnas.1011383107
Microbial eukaryotes in the human microbiome: Ecology, evolution, and future directions 10.3389/fmicb.2011.00153
Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks 10.1038/nmicrobiol.2016.177
Xenobiotics and the human gut microbiome: Metatranscriptomics reveal the active players 10.1016/j.cmet.2013.02.013
Experimental and analytical tools for studying the human microbiome 10.1038/nrg3129
Cohabiting family members share microbiota with one another and with their dogs 10.7554/eLife.00458
The gut microbiota in human energy homeostasis and obesity 10.1016/j.tem.2015.07.002
EMPeror: A tool for visualizing high-throughput microbial community data 10.1186/2047-217X-2-16
Is the genetic code really a frozen accident? New evidence from in vitro selection 10.1111/j.1749-6632.1999.tb08915.x
PyCogent: A toolkit for making sense from sequence 10.1186/gb-2007-8-8-r171
Microbes do not follow the elevational diversity patterns of plants and animals 10.1890/10-1170.1
QIIME allows analysis of high-throughput community sequencing data 10.1038/nmeth.f.303
UniFrac: A new phylogenetic method for comparing microbial communities 10.1128/AEM.71.12.8228-8235.2005
Soil bacterial and fungal communities across a pH gradient in an arable soil 10.1038/ismej.2010.58
Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity 10.1111/mec.12846
Subsistence strategies in traditional societies distinguish gut microbiomes 10.1038/ncomms7505
Faecal transplants 10.1136/bmj.h5149
TopiaryExplorer: Visualizing large phylogenetic trees with environmental metadata 10.1093/bioinformatics/btr517
From molecules to dynamic biological communities 10.1007/s10539-013-9364-4
Diet Versus Phylogeny: a Comparison of Gut Microbiota in Captive Colobine Monkey Species 10.1007/s00248-017-1041-8
Intestinal adaptation in proximal and distal segments: Two epithelial responses diverge after intestinal separation 10.1016/j.surg.2016.10.033
Commensal Bacteria and MAMPs Are Necessary for Stress-Induced Increases in IL-1β and IL-18 but Not IL-6, IL-10 or MCP-1 10.1371/journal.pone.0050636
The human microbiome: Eliminating the biomedical/environmental dichotomy in microbial ecology 10.1111/j.1462-2920.2006.01222_3.x
Gut microbes and the brain: Paradigm shift in neuroscience 10.1523/JNEUROSCI.3299-14.2014
Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat 10.1016/j.chom.2009.08.003
Microbiota regulate intestinal absorption and metabolism of fatty acids in the zebrafish 10.1016/j.chom.2012.08.003
A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins 10.1074/mcp.M800384-MCP200
Context and the human microbiome 10.1186/s40168-015-0117-2
Seasonal variation of postmortem microbial communities 10.1007/s12024-015-9667-7
Diversity of rickettsiales in the microbiome of the lone star tick, amblyomma americanum 10.1128/AEM.02987-13
The under-recognized dominance of Verrucomicrobia in soil bacterial communities 10.1016/j.soilbio.2011.03.012
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains 10.1371/journal.pbio.1001920
Diversity, distribution and sources of bacteria in residential kitchens 10.1111/1462-2920.12036
Gut microbiomes of Malawian twin pairs discordant for kwashiorkor 10.1126/science.1229000
Composition of human skin microbiota affects attractiveness to malaria mosquitoes 10.1371/journal.pone.0028991
Finding the Missing Links among Metabolites, Microbes, and the Host 10.1016/j.immuni.2014.05.015
Do proteins predate DNA? 10.1126/science.286.5440.690
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing 10.1038/nmeth.2276
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex 10.1038/nmeth.1184
PyNAST: A flexible tool for aligning sequences to a template alignment 10.1093/bioinformatics/btp636
Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits 10.1021/acssynbio.5b00133
Bacterial colonization and succession in a newly opened hospital 10.1126/scitranslmed.aah6500
High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity 10.1053/j.gastro.2009.08.042
The pediatric intestinal mucosal microbiome remains altered after clinical resolution of inflammatory and ischemic disease 10.1016/j.surg.2016.05.005
Development of the human gastrointestinal microbiota and insights from high-throughput sequencing 10.1053/j.gastro.2011.02.011
Alterations in the gut microbiota associated with HIV-1 infection 10.1016/j.chom.2013.08.006
Role of the microbiome, probiotics, and 'dysbiosis therapy' in critical illness 10.1097/MCC.0000000000000321
Diversity, structure and convergent evolution of the global sponge microbiome 10.1038/ncomms11870
New insight into the diversity of life's building blocks: Evenness, not variance 10.1089/ast.2011.2280
Bacteria from diverse habitats colonize and compete in the mouse gut 10.1016/j.cell.2014.09.008
Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs) 10.1371/journal.pone.0054703
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives 10.1093/nar/gkq066
Mosquito microbiome dynamics, a background for prevalence and seasonality of West Nile virus 10.3389/fmicb.2017.00526
Evolutionary rates vary among rRNA structural elements 10.1093/nar/gkm101
Simple, recurring RNA binding sites for L-arginine 10.1261/rna.1979410
Rewiring the keyboard: Evolvability of the genetic code 10.1038/35047500
Widespread colonization of the lung by Tropheryma whipplei in HIV infection 10.1164/rccm.201211-2145OC
Artificial Selection: Finding Function amongst Randomized Sequences 10.1002/9783527619504.ch47
Effects of field conditions on fecal microbiota 10.1016/j.mimet.2016.09.017
Dietary effects on human gut microbiome diversity 10.1017/S0007114514004127
An Elegan(t) Screen for Drug-Microbe Interactions 10.1016/j.chom.2017.04.014
The Biological Observation Matrix (BIOM) format or: How I learned to stop worrying and love the ome-ome 10.1186/2047-217X-1-7
Variation in the microbiota of Ixodes ticks with regard to geography, species, and sex 10.1128/AEM.01562-15
Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas) 10.1038/ismej.2015.168
Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection 10.1186/s40168-015-0070-0
Using QIIME to analyze 16S rrna gene sequences from microbial communities 10.1002/0471250953.bi1007s36
Sharing and archiving nucleic acid structure mapping data 10.1261/rna.2753211
Advancing analytical algorithms and pipelines for billions of microbial sequences 10.1016/j.copbio.2011.11.028
Obesity alters gut microbial ecology 10.1073/pnas.0504978102
Why microbiome treatments could pay off soon 10.1038/scientificamerican0315-S5
Pathological rate matrices: From primates to pathogens 10.1186/1471-2105-9-550
Exercise Is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats 10.1371/journal.pone.0125889
Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes 10.1111/j.1462-2920.2010.02277.x
Advancing the microbiome research community 10.1016/j.cell.2014.09.022
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences 10.7717/peerj.545
Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States 10.1126/science.1243768
Interleukin-1β (IL-1β) promotes susceptibility of toll-like receptor 5 (TLR5) deficient mice to colitis 10.1136/gut.2011.240556
A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis 10.1093/bib/bbr009
Characterizing microbial communities through space and time 10.1016/j.copbio.2011.11.017
Collecting fecal samples for microbiome analyses in epidemiology studies 10.1158/1055-9965.EPI-15-0951
Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle 10.1152/ajpregu.00387.2012
DNA extraction for streamlined metagenomics of diverse environmental samples 10.2144/000114559
Fecal microbiome in epidemiologic studies-response 10.1158/1055-9965.EPI-16-0161
Bacterial communities of disease vectors sampled across time, space, and species 10.1038/ismej.2009.111
The hospital microbiome project: Meeting report for the 1st hospital microbiome project workshop on sampling design and building science measurements, chicago, usa, june 7th-8th 2012 10.4056/sigs.3717348
Short-term temporal variability in airborne bacterial and fungal populations 10.1128/AEM.01467-07
Linking long-term dietary patterns with gut microbial enterotypes 10.1126/science.1208344
Evidence for a persistent microbial seed bank throughout the global ocean 10.1073/pnas.1217767110
Metagenomic covariation along densely sampled environmental gradients in the Red Sea 10.1038/ismej.2016.99
How biologists conceptualize genes: An empirical study 10.1016/j.shpsc.2004.09.005
Worlds within worlds: Evolution of the vertebrate gut microbiota 10.1038/nrmicro1978
Ribosomal RNA, the lens into life 10.1261/rna.050799.115
Sequencing our way towards understanding global eukaryotic biodiversity 10.1016/j.tree.2011.11.010
Stress response, gut microbial diversity and sexual signals correlate with social interactions 10.1098/rsbl.2016.0352
Size, constant sequences, and optimal selection 10.1261/rna.2161305
Rethinking enterotypes 10.1016/j.chom.2014.09.013
tRNA creation by hairpin duplication 10.1007/s00239-004-0315-1
Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease 10.1016/j.cell.2016.11.018
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample 10.1073/pnas.1000080107
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision 10.1038/ismej.2015.235
Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (plethodon cinereus) 10.1038/ismej.2013.200
Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water 10.1016/j.watres.2014.11.003
RNA-amino acid binding: A stereochemical era for the genetic code 10.1007/s00239-009-9270-1
Short pyrosequencing reads suffice for accurate microbial community analysis 10.1093/nar/gkm541
Heritable components of the human fecal microbiome are associated with visceral fat 10.1186/s13059-016-1052-7
Genetic Determinants of the Gut Microbiome in UK Twins 10.1016/j.chom.2016.04.017
Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato) 10.1186/1471-2180-13-114
Succession of microbial consortia in the developing infant gut microbiome 10.1073/pnas.1000081107
Dynamics of the human gut microbiome in inflammatory bowel disease 10.1038/nmicrobiol.2017.4
The founding charter of the Genomic Observatories Network 10.1186/2047-217X-3-2
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses 10.1038/ismej.2008.127
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans 10.1126/science.1198719
Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples 10.1111/j.1574-6968.2010.01965.x
RNA structure prediction from evolutionary patterns of nucleotide composition 10.1093/nar/gkn987
Genetic and environmental control of host-gut microbiota interactions 10.1101/gr.194118.115
Analysis of membrane proteins from human chronic myelogenous leukemia cells: Comparison of extraction methods for multidimensional LC-MS/MS 10.1021/pr050313z
Error minimization and coding triplet/binding site associations are independent features of the canonical genetic code 10.1007/s00239-004-0314-2
Comparison of methods for estimating the nucleotide substitution matrix 10.1186/1471-2105-9-511
From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal 10.1261/rna.881308
Tools for the microbiome: Nano and beyond 10.1021/acsnano.5b07826
Database-Driven Grid Computing and Distributed Web Applications: A Comparison 10.1002/9780470191637.ch11
Emerging Trends for Microbiome Analysis: From Single-Cell Functional Imaging to Microbiome Big Data 10.1016/J.ENG.2017.01.020
Estimate of the abundance of cardiomyopathic mutations in the β-myosin gene 10.1016/j.ijcard.2008.12.199
Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA 10.1261/rna.2220210
Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples 10.1021/acs.analchem.7b01381
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation 10.1016/j.tim.2011.07.006
Environmental and ecological factors that shape the gut bacterial communities of fish: A meta-analysis 10.1111/j.1365-294X.2012.05552.x
Keemei: Cloud-based validation of tabular bioinformatics file formats in Google Sheets 10.1186/s13742-016-0133-6
Vertebrate decomposition is accelerated by soil microbes 10.1128/AEM.00957-14
Satellite remote sensing data can be used to model marine microbial metabolite turnover 10.1038/ismej.2014.107
Diversity, stability and resilience of the human gut microbiota 10.1038/nature11550
Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau 10.1111/j.1462-2920.2012.02799.x
Bacterial communities associated with the lichen symbiosis 10.1128/AEM.02257-10
Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood 10.1101/gr.140608.112
Guilt by association: The arginine case revisited 10.1017/S1355838200000145
Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest 10.1038/ismej.2014.36
Global patterns in bacterial diversity 10.1073/pnas.0611525104
Fast find: A novel computational approach to analyzing combinatorial motifs 10.1186/1471-2105-7-1
Predictive modeling of gingivitis severity and susceptibility via oral microbiota 10.1038/ismej.2014.32
Conceptualizing a Genomics Software Institute (GSI) 10.4056/sigs.2485911
Tracking down the sources of experimental contamination in microbiome studies 10.1186/s13059-014-0564-2
Replenishing our defensive microbes 10.1002/bies.201300018
Insights from Characterizing Extinct Human Gut Microbiomes 10.1371/journal.pone.0051146
The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome 10.1371/journal.pbio.1001377
Unlocking the potential of metagenomics through replicated experimental design 10.1038/nbt.2235
Tiny microbes, enormous impacts: What matters in gut microbiome studies? 10.1186/s13059-016-1086-x
ConStrains identifies microbial strains in metagenomic datasets 10.1038/nbt.3319
Microbial community assembly and metabolic function during mammalian corpse decomposition 10.1126/science.aad2646
Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome 10.1002/mds.26942
PH is a good predictor of the distribution of anoxygenic purple phototrophic bacteria in Arctic soils 10.1016/j.soilbio.2014.03.014
Fat and vitamin intakes during pregnancy have stronger relations with a proinflammatory maternal microbiota than does carbohydrate intake 10.1186/s40168-016-0200-3
Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents 10.1038/ismej.2012.81
Microbiology of death 10.1016/j.cub.2016.03.042
A meta-analysis of changes in bacterial and archaeal communities with time 10.1038/ismej.2013.54
PrimerProspector: De novo design and taxonomic analysis of barcoded polymerase chain reaction primers 10.1093/bioinformatics/btr087
SnapShot: The Human Microbiome 10.1016/j.cell.2014.07.019
Microbial Skin Inhabitants: Friends Forever 10.1016/j.cell.2016.04.035
The microbiome explored: Recent insights and future challenges 10.1038/nrmicro2973
Supervised classification of microbiota mitigates mislabeling errors 10.1038/ismej.2010.148
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics 10.1021/ac035229m
Using machine learning to identify major shifts in human gut microbiome protein family abundance in disease 10.1109/BigData.2016.7840731
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms 10.1038/ismej.2012.8
Patterns in Gut Microbiota Similarity Associated with Degree of Sociality among Sex Classes of a Neotropical Primate 10.1007/s00248-017-0938-6
Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei 10.1128/AEM.00447-09
The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study 10.1097/PSY.0000000000000512
Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys 10.1038/ismej.2011.186
Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences 10.1038/ismej.2011.187
The Earth Microbiome project: Successes and aspirations 10.1186/s12915-014-0069-1
Microbial biogeography of public restroom surfaces 10.1371/journal.pone.0028132
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer 10.1038/nm.4039
Mathematical approaches for describing microbial populations: Practice and theory for extrapolation of rich environments 10.1002/9781118409855.ch4
Meeting report of the RNA ontology consortium January 8-9, 2011 10.4056/sigs.1724282
Associations between human milk oligosaccharides and infant body composition in the first 6 mo of life 10.3945/ajcn.115.115451
Prevalence and genetic diversity of Blastocystis in family units living in the United States 10.1016/j.meegid.2016.08.018
Ancient human oral plaque preserves a wealth of biological data 10.1038/ng.2930
Examining the global distribution of dominant archaeal populations in soil 10.1038/ismej.2010.171
A lightweight, scalable grid computing framework for parallel bioinformatics applications 10.1109/HPCS.2005.7
Interacting symbionts and immunity in the amphibian skin mucosome predict disease risk and probiotic effectiveness 10.1371/journal.pone.0096375
Activating and inhibiting connections in biological network dynamics 10.1186/1745-6150-3-49
Microbiota at multiple body sites during pregnancy in a rural tanzanian population and effects of Moringa-supplemented probiotic yogurt 10.1128/AEM.00780-15
Temporal variability is a personalized feature of the human microbiome 10.1186/s13059-014-0531-y
Can Your Microbiome Tell You What to Eat? 10.1016/j.cmet.2015.11.009
Impact of Ileocecal Resection and Concomitant Antibiotics on the Microbiome of the Murine Jejunum and Colon 10.1371/journal.pone.0073140
Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics 10.1186/1471-2148-8-327
Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments 10.1038/ismej.2010.167
MotifCluster: An interactive online tool for clustering and visualizing sequences using shared motifs 10.1186/gb-2008-9-8-r128
Longitudinal analysis of microbial interaction between humans and the indoor environment 10.1126/science.1254529
The influence of sex, handedness, and washing on the diversity of hand surface bacteria 10.1073/pnas.0807920105
Human genetics shape the gut microbiome 10.1016/j.cell.2014.09.053
Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity 10.1128/mBio.01371-14
Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape 10.1371/journal.pone.0173811
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system 10.7554/eLife.01104.001
Gut microbiota from twins discordant for obesity modulate metabolism in mice 10.1126/science.1241214
Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil 10.1016/j.soilbio.2010.02.003
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags 10.1186/1471-2180-10-206
The 'rare biosphere': A reality check 10.1038/nmeth0909-636
Variable responses of human and non-human primate gut microbiomes to a Western diet 10.1186/s40168-015-0120-7
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences 10.1038/nbt.2676
Global patterns in the biogeography of bacterial taxa 10.1111/j.1462-2920.2010.02315.x
RNASTAR: An RNA structural alignment repository that provides insight into the evolution of natural and artificial RNAs 10.1261/rna.032052.111
Spatial and temporal variability of the human microbiota 10.1111/j.1469-0691.2012.03861.x
Cross-biome comparison of microbial association networks 10.3389/fmicb.2015.01200
Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice 10.1016/j.cmet.2012.12.007
Mass spectrometry based molecular 3D-cartography of plant metabolites 10.3389/fpls.2017.00429
Comparison of Collection Methods for Fecal Samples in Microbiome Studies 10.1093/aje/kww177
Translating the human microbiome 10.1038/nbt.2543
Specialized metabolites from the microbiome in health and disease 10.1016/j.cmet.2014.10.016
The treatment-naive microbiome in new-onset Crohn's disease 10.1016/j.chom.2014.02.005
Molecular cartography of the human skin surface in 3D 10.1073/pnas.1424409112
Reports of the death of the gene are greatly exaggerated 10.1007/s10539-006-9039-5
Antibiotic discovery is a walk in the park 10.1073/pnas.1618221114
Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota 10.1038/ismej.2015.64
Natural and artificial RNAs occupy the same restricted region of sequence space 10.1261/rna.1923210
Stable tRNA-based phylogenies using only 76 nucleotides 10.1261/rna.726010
The microbiome quality control project: Baseline study design and future directions 10.1186/s13059-015-0841-8
The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis 10.1371/journal.ppat.0040020
Normalization and microbial differential abundance strategies depend upon data characteristics 10.1186/s40168-017-0237-y
Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere 10.1371/journal.pone.0073079
TaskSpaces: A Software Framework for Parallel Bioinformatics on Computational Grids 10.1002/0471756504.ch26
Anal gas evacuation and colonic microbiota in patients with flatulence: Effect of diet 10.1136/gutjnl-2012-303013
Unique strain of Rickettsia parkeri associated with the hard tick Dermacentor parumapertus Neumann in the western United States 10.1128/AEM.03463-16
A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease 10.1371/journal.pone.0080702
Bringing the Dynamic Microbiome to Life with Animations 10.1016/j.chom.2016.12.009
The Human Microbiome Project 10.1038/nature06244
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota 10.1073/pnas.1306070110
Multilevel research strategies and biological systems 10.1086/677889
Microbiota and host nutrition across plant and animal kingdoms 10.1016/j.chom.2015.04.009
What is the value of a food and drug administration investigational new drug application for fecal microbiota transplantation to treat clostridium difficile infection? 10.1016/j.cgh.2013.10.009
Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns 10.1099/mic.0.2007/011833-0
Co-habiting amphibian species harbor unique skin bacterial communities in wild populations 10.1038/ismej.2011.129
Our microbial selves: What ecology can teach us 10.1038/embor.2011.137
Postprandial remodeling of the gut microbiota in Burmese pythons 10.1038/ismej.2010.71
Parallel evolution of the genetic code in arthropod mitochondrial genomes 10.1371/journal.pbio.0040127
Origin of microbial biomineralization and magnetotaxis during the Archean 10.1073/pnas.1614654114
UCHIME improves sensitivity and speed of chimera detection 10.1093/bioinformatics/btr381
Parallel mapping of antibiotic resistance alleles in Escherichia coli 10.1371/journal.pone.0146916
Individual diet has sex-dependent effects on vertebrate gut microbiota 10.1038/ncomms5500
Conducting a microbiome study 10.1016/j.cell.2014.06.037
Reshaping the gut microbiome with bacterial transplantation and antibiotic intake 10.1101/gr.107987.110
Boulder ALignment editor (ALE): A web-based RNA alignment tool 10.1093/bioinformatics/btr258
Insights and inferences about integron evolution from genomic data 10.1186/1471-2164-9-261
CodonExplorer: An interactive online database for the analysis of codon usage and sequence composition 10.1007/978-1-59745-251-9_10
Bioinformatics Assessment of β-Myosin Mutations Reveals Myosin's High Sensitivity to Mutations 10.1016/j.tcm.2008.04.001
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea 10.1038/ismej.2011.139
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites 10.1016/j.jaci.2012.03.010
Responses of gut microbiota to diet composition and weight loss in lean and obese mice 10.1038/oby.2011.111
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil 10.1128/AEM.00358-07
The RNA structure alignment ontology 10.1261/rna.1601409
Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch) 10.1111/ele.12301
Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project 10.4056/sigs.1433550
Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota 10.1016/j.chom.2015.08.005
The genomic standards consortium: Bringing standards to life for microbial ecology 10.1038/ismej.2011.39
The long-term stability of the human gut microbiota 10.1126/science.1237439
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins 10.1126/scitranslmed.3002701
Carcass mass has little influence on the structure of gravesoil microbial communities 10.1007/s00414-015-1206-2
Supervised classification of human microbiota 10.1111/j.1574-6976.2010.00251.x
A core gut microbiome in obese and lean twins 10.1038/nature07540
Defining seasonal marine microbial community dynamics 10.1038/ismej.2011.107
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons 10.1101/gr.112730.110
Effect of preservation method on spider monkey (Ateles geoffroyi) fecal microbiota over 8 weeks 10.1016/j.mimet.2015.03.021
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions 10.1038/nmeth0910-668b
Euphorbia plant latex is inhabited by diverse microbial communities 10.3732/ajb.1500223
Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data 10.1038/ismej.2009.97
Ret function in muscle stem cells points to tyrosine kinase inhibitor therapy for facioscapulohumeral muscular dystrophy 10.7554/eLife.11405.001
An ancient origin of magnetotactic bacteria 10.1073/pnas.1707301114
Global biogeography of highly diverse protistan communities in soil 10.1038/ismej.2012.147
Evolution of Symbiotic Bacteria in the Distal Human Intestine 10.1371/journal.pbio.0050156
Advancing our understanding of the human microbiome using QIIME 10.1016/B978-0-12-407863-5.00019-8
Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae 10.7554/eLife.24214
BayesFold: Rational 2° folds that combine thermodynamic, covariation; and chemical data for aligned RNA sequences 10.1261/rna.5168504
The amphibian skin-associated microbiome across species, space and life history stages 10.1111/mec.12510
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer 10.1038/ismej.2012.26
Meta-analyses of studies of the human microbiota 10.1101/gr.151803.112
Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice 10.1073/pnas.1600324113
Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids 10.1093/nar/gki886
Comparison of the vaginal microbial communities in women with recurrent genital HSV receiving acyclovir intravaginal rings 10.1016/j.antiviral.2013.12.004
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data 10.3233/AO-2011-0082
Microbiota restoration: Natural and supplemented recovery of human microbial communities 10.1038/nrmicro2473
Occurrence of the aminoacyl-tRNA synthetases in high-molecular weight complexes correlates with the size of substrate amino acids 10.1016/j.febslet.2005.05.038
Multiple pattern matching: A Markov chain approach 10.1007/s00285-007-0109-3
Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities 10.1371/journal.pone.0047879
Microbiome Tools for Forensic Science 10.1016/j.tibtech.2017.03.006
Multiplex growth rate phenotyping of synthetic mutants in selection to engineer glucose and xylose co-utilization in Escherichia coli 10.1002/bit.26217
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys 10.1038/ismej.2011.82
Lake microbial communities are resilient after a whole-ecosystem disturbance 10.1038/ismej.2012.56
Host age, social group, and habitat type influence the gut microbiota of wild ring-tailed lemurs (Lemur catta) 10.1002/ajp.22555
Bacterial community structures are unique and resilient in full-scale bioenergy systems 10.1073/pnas.1015676108
Structural basis for diversity in the SAM clan of riboswitches 10.1073/pnas.1312918111
Eggshell Bacterial Load Is Related to Antimicrobial Properties of Feathers Lining Barn Swallow Nests 10.1007/s00248-013-0338-5
Microbiome-wide association studies link dynamic microbial consortia to disease 10.1038/nature18850
The Ecology of Microbial Communities Associated with Macrocystis pyrifera 10.1371/journal.pone.0067480
Does protein structure influence trypsin miscleavage? 10.1109/MEMB.2005.1436461
HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats 10.1371/journal.pone.0105684
Toward effective probiotics for autism and other neurodevelopmental disorders 10.1016/j.cell.2013.11.035
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns 10.1073/pnas.1002601107
Species divergence and the measurement of microbial diversity 10.1111/j.1574-6976.2008.00111.x
Microbial endocrinology: The interplay between the microbiota and the endocrine system 10.1093/femsre/fuu010
Reply to Putignani et al.: Vagina as a major source of natural inoculum for the newborn 10.1073/pnas.1012458107
Bayesian community-wide culture-independent microbial source tracking 10.1038/nmeth.1650
MICROBIOME. A unified initiative to harness Earth's microbiomes. 10.1126/science.aac8480
How mitochondria redefine the code 10.1007/s002390010220
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets 10.1371/journal.pcbi.1002863
Walls talk: Microbial biogeography of homes spanning urbanization 10.1126/sciadv.1501061
CodonExplorer: An online tool for analyzing codon usage and sequence composition, scaling from genes to genomes 10.1093/bioinformatics/btp141
Biphasic assembly of the murine intestinal microbiota during early development 10.1038/ismej.2013.15
SitePainter: A tool for exploring biogeographical patterns 10.1093/bioinformatics/btr685
Bacterial community variation in human body habitats across space and time 10.1126/science.1177486
Human immunodeficiency virus nef signature sequences are associated with pulmonary hypertension 10.1089/aid.2011.0021
The unifrac significance test is sensitive to tree topology 10.1186/s12859-015-0640-y
Host-associated and free-living phage communities differ profoundly in phylogenetic composition 10.1371/journal.pone.0016900
Human-associated microbial signatures: Examining their predictive value 10.1016/j.chom.2011.09.003
Key challenges in proteomics and proteoinformatics 10.1109/MEMB.2005.1436456
The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice 10.1126/scitranslmed.3000322
Toward a predictive understanding of earth’s microbiomes to address 21st century challenges 10.1128/mBio.00714-16
A preliminary survey of lichen associated eukaryotes using pyrosequencing 10.1017/S0024282911000648
The convergence of carbohydrate active gene repertoires in human gut microbes 10.1073/pnas.0807339105
Analysis of the gut microbiota in the old order amish and its relation to the metabolic syndrome 10.1371/journal.pone.0043052
The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011 10.4056/sigs.2134923
Using the nucleotide substitution rate matrix to detect horizontal gene transfer 10.1186/1471-2105-7-476
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat 10.1038/ismej.2012.79
Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity 10.1098/rspb.2016.1553
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale 10.1128/AEM.00335-09
Precision medicine in alcoholic and nonalcoholic fatty liver disease via modulating the gut microbiota 10.1152/ajpgi.00245.2016
The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework 10.3390/ijms10114723
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts 10.1101/gr.138198.112
The intestinal metabolome: An intersection between microbiota and host 10.1053/j.gastro.2014.03.001
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins 10.1073/pnas.1002355107
Genomic standards consortium projects 10.4056/sigs.5559680
UniFrac: An effective distance metric for microbial community comparison 10.1038/ismej.2010.133
Let researchers try new paths 10.1038/538451a
Host-bacterial coevolution and the search for new drug targets 10.1016/j.cbpa.2008.01.015
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients 10.1038/ismej.2011.159
Technology and techniques for microbial ecology via DNA sequencing 10.1513/AnnalsATS.201306-160MG
The Western English Channel contains a persistent microbial seed bank 10.1038/ismej.2011.162
DivergentSet, a tool for picking non-redundant sequences from large sequence collections 10.1074/mcp.T600022-MCP200
The Genomic Standards Consortium 10.1371/journal.pbio.1001088
UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context 10.1186/1471-2105-7-371
Life through a microbial lens 10.1007/s11016-009-9288-4
Why microbiome treatments could pay off soon 10.1038/518S5a
The Microbiome and Human Biology. 10.1146/annurev-genom-083115-022438
Correction for Gonzalez et al., "Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort". 10.1128/msystems.00023-17
Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease. 10.1186/s40168-017-0269-3
Significant Impacts of Increasing Aridity on the Arid Soil Microbiome. 10.1128/msystems.00195-16
Pigs, Unlike Mice, Have Two Distinct Colonic Stem Cell Populations Similar to Humans That Respond to High-Calorie Diet prior to Insulin Resistance. 10.1158/1940-6207.capr-17-0010
Intermittent Hypoxia and Hypercapnia Accelerate Atherosclerosis, Partially via Trimethylamine-Oxide. 10.1165/rcmb.2017-0086oc
Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes". 10.1128/msphere.00296-17
Mass spectrometry searches using MASST 10.1038/s41587-019-0375-9
Oral probiotic versus placebo and the maternal microbiome during pregnancy: A randomized controlled trial 10.1016/j.ajog.2019.11.064
Using microbiome tools for estimating the postmortem interval 10.1016/B978-0-12-815379-6.00012-X
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. 10.1128/mbio.02901-19
Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue 10.1111/1556-4029.13949
Fructose stimulated de novo lipogenesis is promoted by inflammation 10.1038/s42255-020-0261-2
The Urinary Tract Microbiome in Older Women Exhibits Host Genetic and Environmental Influences 10.1016/j.chom.2020.06.022
The emergence of microbiome centres 10.1038/s41564-019-0644-x
Expanding the scope and scale of microbiome research 10.1186/s13059-019-1804-2
Are microbiome studies ready for hypothesis-driven research? 10.1016/j.mib.2018.07.002
Molecular and microbial microenvironments in chronically diseased lungs associated with cystic fibrosis 10.1128/mSystems.00375-19
Suppression of the gut microbiome ameliorates age-related arterial dysfunction and oxidative stress in mice 10.1113/JP277336
Gut microbiome in serious mental illnesses: A systematic review and critical evaluation 10.1016/j.schres.2019.08.026
Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India 10.1128/mSphere.00731-20
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes 10.1038/s41396-018-0175-0
Major shifts in gut microbiota during development and its relationship to growth in ostriches 10.1111/mec.15087
Voices in methods development 10.1038/s41592-019-0585-6
Engineering the microbiome for animal health and conservation 10.1177/1535370219830075
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces 10.1186/s40168-019-0666-x
Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity 10.1186/s13059-019-1831-z
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria 10.3390/md19010020
The microbiome and its potential for pharmacology 10.1007/164_2019_317
Age- And sex-dependent patterns of gut microbial diversity in human adults 10.1128/mSystems.00261-19
Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice 10.1016/j.cell.2019.05.004
Reply to Sun et al., “Identifying composition novelty in microbiome studies: Improvement of prediction accuracy” 10.1128/mBio.01234-19
Effects of the microalgae Chlamydomonas on gastrointestinal health 10.1016/j.jff.2019.103738
Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media 10.1093/gigascience/giaa156
Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study 10.3389/fpsyt.2021.648475
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics 10.1038/s41587-020-0660-7
Comparison of oral collection methods for studies of microbiota 10.1158/1055-9965.EPI-18-0312
Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome 10.1128/mSystems.00901-19
Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome 10.1371/journal.pone.0229001
Redbiom: A rapid sample discovery and feature characterization system 10.1128/mSystems.00215-19
Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort 10.1128/mBio.01751-18
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks 10.1371/journal.pcbi.1007007
Reply to Moossavi and Azad, “quantifying and interpreting the association between early-life gut microbiota composition and childhood obesity” 10.1128/MBIO.00047-19
Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus 10.1038/s41396-018-0214-x
Quantifying and understanding well-to-well contamination in microbiome research 10.1128/mSystems.00186-19
Preserving microbial diversity. 10.1126/science.aau8816
Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis. 10.4049/jimmunol.1800614
GABA-modulating bacteria of the human gut microbiota 10.1038/s41564-018-0307-3
Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude 10.1145/3311790.3399614
Exploring the Composition and Functions of Plastic Microbiome Using Whole-Genome Sequencing 10.1021/acs.est.0c07952
Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice 10.3389/fpsyt.2020.00518
Publisher Correction: The gut-liver axis and the intersection with the microbiome. 10.1038/s41575-018-0031-8
Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis 10.1016/j.eurpsy.2018.05.011
The microbiome and human cancer 10.1126/science.abc4552
Best practices for analysing microbiomes 10.1038/s41579-018-0029-9
Consent insufficient for data release−Response 10.1126/science.aax7509
Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans 10.1016/j.cell.2020.09.009
Microbial biogeography and ecology of the mouth and implications for periodontal diseases 10.1111/prd.12268
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota 10.1038/s41467-018-05284-4
Erratum to: The sponge microbiome project. 10.1093/gigascience/giy145
Guiding longitudinal sampling in IBD cohorts 10.1136/gutjnl-2017-315352
A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease 10.1038/s41467-019-09455-9
Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome 10.1186/s40168-019-0636-3
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree 10.1038/s41589-020-00677-3
High-throughput wastewater SARS-CoV-2 detection enables forecasting of community infection dynamics in San Diego county 10.1128/MSYSTEMS.00045-21
Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians 10.1016/j.cgh.2018.09.017
Coordinating and assisting research at the SARS-CoV-2/ microbiome nexus 10.1128/MSYSTEMS.00999-20
Expanding magnetic organelle biogenesis in the domain Bacteria 10.1186/s40168-020-00931-9
Toward unrestricted use of public genomic data 10.1126/science.aaw1280
Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection 10.1186/s40168-021-01026-9
Single-cell transcriptomics reveal a correlation between genome architecture and gene family evolution in ciliates 10.1128/mBio.02524-19
Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease 10.1073/pnas.2017129117
Ground beef microbiome changes with antimicrobial decontamination interventions and product storage 10.1371/journal.pone.0217947
Effects of Immunization With the Soil-Derived Bacterium Mycobacterium vaccae on Stress Coping Behaviors and Cognitive Performance in a “Two Hit” Stressor Model 10.3389/fphys.2020.524833
Subgingival Microbiota and Longitudinal Glucose Change: The Oral Infections, Glucose Intolerance and Insulin Resistance Study (ORIGINS) 10.1177/0022034519881978
SARS-CoV-2 Screening among Symptom-Free Healthcare Workers 10.1017/ice.2021.81
Links between gut microbiome composition and fatty liver disease in a large population sample 10.1080/19490976.2021.1888673
Docent: Transforming personal intuitions to scientific hypotheses through content learning and process training 10.1145/3231644.3231646
Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity 10.1093/ibd/izaa262
Home chemical and microbial transitions across urbanization 10.1038/s41564-019-0593-4
Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome 10.1038/s41598-019-49823-5
Evaluating metagenomic prediction of the metaproteome in a 4.5-year study of a patient with Crohn’s disease 10.1128/MSYSTEMS.00337-18
SHOGUN: A modular, accurate and scalable framework for microbiome quantification 10.1093/bioinformatics/btaa277
CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection 10.1073/pnas.2003656117
Empress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets 10.1128/MSYSTEMS.01216-20
Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study 10.1111/cts.12785
Trait-like vulnerability of higher-order cognition and ability to maintain wakefulness during combined sleep restriction and circadian misalignment 10.1093/sleep/zsz113
IL-4Rα Blockade by Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Atopic Dermatitis 10.1016/j.jid.2019.05.024
Reduced independence in daily living is associated with the gut microbiome in people with HIV and HCV 10.1128/mSystems.00528-20
Host variables confound gut microbiota studies of human disease 10.1038/s41586-020-2881-9
High-Resolution longitudinal dynamics of the cystic fibrosis sputum microbiome and metabolome through antibiotic therapy 10.1128/mSystems.00292-20
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing 10.1038/s41592-020-01041-y
Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus) 10.1002/mbo3.716
Earth microbial co-occurrence network reveals interconnection pattern across microbiomes 10.1186/s40168-020-00857-2
MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities 10.1016/j.cels.2019.09.004
Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria 10.1128/mSystems.00083-18
The impact of skin care products on skin chemistry and microbiome dynamics 10.1186/s12915-019-0660-6
Disease-modifying therapies alter gut microbial composition in MS 10.1212/NXI.0000000000000517
Current Concepts, Opportunities, and Challenges of Gut Microbiome-Based Personalized Medicine in Nonalcoholic Fatty Liver Disease 10.1016/j.cmet.2020.11.010
Gut microbiota in wild and captive Guizhou snub-nosed monkeys, Rhinopithecus brelichi 10.1002/ajp.22989
Large-scale replicated field study of maize rhizosphere identifies heritable microbes 10.1073/pnas.1800918115
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data 10.1038/s41587-020-0700-3
Author Correction: Regional variation limits applications of healthy gut microbiome reference ranges and disease models. 10.1038/s41591-018-0219-z
Three-dimensional culture of oral progenitor cells: Effects on small extracellular vesicles production and proliferative function 10.1111/jop.12981
Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017 10.1186/s40168-018-0596-z
Human skin, oral, and gut microbiomes predict chronological age 10.1128/mSystems.00630-19
Identifying and predicting novelty in microbiome studies 10.1128/mBio.02099-18
Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry 10.1053/j.gastro.2020.09.038
Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media 10.1038/s41597-019-0331-z
High-throughput miniaturized 16S rRNA amplicon library preparation reduces costs while preserving microbiome integrity 10.1128/mSystems.00166-18
Species-level functional profiling of metagenomes and metatranscriptomes 10.1038/s41592-018-0176-y
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases 10.1038/s41586-019-1237-9
Effects of Diet versus Gastric Bypass on Metabolic Function in Diabetes 10.1056/NEJMoa2003697
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 10.1038/s41467-020-16366-7
Is there convergence of gut microbes in blood-feeding vertebrates? 10.1098/rstb.2018.0249
The genetic basis for adaptation of modeldesigned syntrophic co-cultures 10.1371/journal.pcbi.1006213
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information 10.1101/gr.260380.119
Red Sea SAR11 and Prochlorococcus single-cell genomes reflect globally distributed pangenomes 10.1128/AEM.00369-19
Niche partitioning of a pathogenic microbiome driven by chemical gradients 10.1126/sciadv.aau1908
ReDU: a framework to find and reanalyze public mass spectrometry data 10.1038/s41592-020-0916-7
Reply to: Examining microbe–metabolite correlations by linear methods 10.1038/s41592-020-01007-0
Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study 10.1002/ijc.33473
Microbe-metabolite associations linked to the rebounding murine gut microbiome postcolonization with vancomycin-resistant enterococcus faecium 10.1128/mSystems.00452-20
A microbiome-based index for assessing skin health and treatment effects for atopic dermatitis in children 10.1128/mSystems.00293-19
Absence of CCR2 reduces spontaneous intestinal tumorigenesis in the ApcMin/+ mouse model 10.1002/ijc.33477
QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data 10.1002/cpbi.100
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads 10.1186/s13059-019-1834-9
Striped UniFrac: enabling microbiome analysis at unprecedented scale 10.1038/s41592-018-0187-8
Role of the microbiome in human development 10.1136/gutjnl-2018-317503
Qiita: rapid, web-enabled microbiome meta-analysis 10.1038/s41592-018-0141-9
The gut microbiome, aging, and longevity: A systematic review 10.3390/nu12123759
Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media 10.1038/s41597-019-0051-4
Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome 10.3389/fphys.2021.663950
Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations 10.1016/j.tim.2018.11.003
A distinct microbiome signature in posttreatment lyme disease patients 10.1128/mBio.02310-20
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment 10.1186/s40168-020-00960-4
Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults 10.1016/j.bbi.2020.02.004
Household paired design reduces variance and increases power in multi-city gut microbiome study in multiple sclerosis 10.1177/1352458520924594
Exposure to toxic metals triggers unique responses from the rat gut microbiota 10.1038/s41598-018-24931-w
Global chemical effects of the microbiome include new bile-acid conjugations 10.1038/s41586-020-2047-9
Farm-like indoor microbiota in non-farm homes protects children from asthma development 10.1038/s41591-019-0469-4
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules 10.1101/gr.265645.120
Creating a 3D microbial and chemical snapshot of a human habitat. 10.1038/s41598-018-21541-4
Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome. 10.1371/journal.pntd.0006344
Microbiome and metagenome analyses of a closed habitat during human occupation 10.1128/mSystems.00367-20
Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations 10.1371/journal.pone.0224757
Temporal, environmental, and biological drivers of the mucosal microbiome in a Wild Marine Fish, Scomber japonicus 10.1128/MSPHERE.00401-20
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month 10.1186/s40168-019-0645-2
Altered Gut Microbiota and Host Metabolite Profiles in Women with Human Immunodeficiency Virus 10.1093/cid/ciz1117
Multiple-disease detection and classification across cohorts via microbiome search 10.1128/mSystems.00150-20
Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. 10.1186/s13059-020-01970-z
Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection 10.1084/jem.20192276
Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk 10.1016/j.bbi.2020.10.003
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary 10.2144/btn-2018-0192
Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States 10.1016/j.cell.2021.03.052
Regional variation limits applications of healthy gut microbiome reference ranges and disease models 10.1038/s41591-018-0164-x
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus 10.1186/s12866-018-1341-2
Learning representations of microbe–metabolite interactions 10.1038/s41592-019-0616-3
Establishing microbial composition measurement standards with reference frames 10.1038/s41467-019-10656-5
Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny 10.1186/s13059-019-1807-z
American Gut: An open platform for citizen science microbiome research 10.1128/MSYSTEMS.00031-18
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities 10.2144/BTN-2020-0153
Author Correction: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity. 10.1038/s41586-018-0304-y
Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing 10.1016/j.envint.2020.105604
Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations 10.1053/j.gastro.2019.11.305
Calour: an Interactive, Microbe-Centric Analysis Tool 10.1128/MSYSTEMS.00269-18
Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects 10.1016/j.schres.2018.09.014
Challenges in the construction of knowledge bases for human microbiome-disease associations 10.1186/s40168-019-0742-2
Evaluating organism-wide changes in the metabolome and microbiome following a single dose of antibiotic 10.1128/MSYSTEMS.00340-20
Links between environment, diet, and the hunter-gatherer microbiome 10.1080/19490976.2018.1494103
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism 10.1038/s41467-018-05336-9
The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment 10.3389/fmicb.2020.02015
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea 10.1038/s41467-019-13443-4
Microbiome analyses of blood and tissues suggest cancer diagnostic approach 10.1038/s41586-020-2095-1
A novel sparse compositional technique reveals microbial perturbations 10.1128/MSYSTEMS.00016-19
Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study 10.1038/s41598-020-59016-0
Quantifying live microbial load in human saliva samples over time reveals stable composition and dynamic load 10.1128/MSYSTEMS.01182-20
Associations of the fecal microbial proteome composition and proneness to diet-induced obesity 10.1074/mcp.RA119.001623
Vitamin D metabolites and the gut microbiome in older men 10.1038/s41467-020-19793-8
Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell 'Omics 10.1093/gbe/evy133
Early-life gut dysbiosis linked to juvenile mortality in ostriches 10.1186/s40168-020-00925-7
Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures 10.1016/j.cell.2020.07.040
Species abundance information improves sequence taxonomy classification accuracy 10.1038/s41467-019-12669-6
Organ-level protein networks as a reference for the host effects of the microbiome 10.1101/gr.256875.119
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (Nature Biotechnology (2017) 35 (725-731) DOI: 10.1038/nbt.3893) 10.1038/nbt0718-660d
Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota 10.1038/s41597-020-00656-2
Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs 10.1128/mSystems.00635-19
Animal Models for Microbiome Research and Drug Discovery 10.1016/j.ddmod.2019.09.001
FXR Regulates Intestinal Cancer Stem Cell Proliferation 10.1016/j.cell.2019.01.036
The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months 10.1093/ajcn/nqaa011
Intermittent hypoxia and hypercapnia reproducibly change the gut microbiome and metabolome across rodent model systems 10.1128/mSystems.00058-19
Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020 10.1186/s40168-020-00951-5
Association between the gut microbiota and blood pressure in a population cohort of 6953 individuals 10.1161/JAHA.120.016641
Longitudinal survey of microbiome associated with particulate matter in a megacity 10.1186/s13059-020-01964-x
Early-career scientists shaping the world 10.1128/mSystems.00196-19
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm 10.1038/s41467-018-04409-z
The gut-liver axis and the intersection with the microbiome 10.1038/s41575-018-0011-z
A gut bacterial amyloid promotes a-synuclein aggregation and motor impairment in mice 10.7554/eLife.53111
Leveling up citizen science 10.1038/s41587-020-0694-x
Evaluating the information content of shallow shotgun metagenomics 10.1128/mSystems.00069-18
Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study 10.1016/j.envres.2021.111084
Depression in individuals coinfected with HIV and HCV is associated with systematic differences in the gut microbiome and metabolome 10.1128/mSystems.00465-20
Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota 10.1038/s41396-020-00855-0
Microbial ecology of atlantic salmon (Salmo salar) hatcheries: Impacts of the built environment on fish mucosal microbiota 10.1128/AEM.00411-20
Handwashing and detergent treatment greatly reduce SARS-CoV-2 viral load on halloween candy handled by COVID-19 patients 10.1128/mSystems.01074-20
Author Correction: Farm-like indoor microbiota in non-farm homes protects children from asthma development. 10.1038/s41591-019-0546-8
The Effects of Captivity on the Mammalian Gut Microbiome. 10.1093/icb/icx090
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. 10.1038/nbt0218-196a
Leukotriene B4-receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression. 10.1080/2162402x.2017.1361593
Genetic influences on the human oral microbiome. 10.1186/s12864-017-4008-8
Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania. 10.1126/science.aan4834
Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models. 10.1073/pnas.1711235114
Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection. 10.1021/acs.analchem.7b02423
The sponge microbiome project. 10.1093/gigascience/gix077
Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants. 10.1093/icb/icx088
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. 10.1038/nbt.3981
Impacts of the Human Gut Microbiome on Therapeutics. 10.1146/annurev-pharmtox-042017-031849
Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites. 10.1128/msystems.00093-17
Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project. 10.1038/nature24485
Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome. 10.1128/mbio.01343-17
Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus. 10.1371/journal.pone.0184336
A communal catalogue reveals Earth's multiscale microbial diversity. 10.1038/nature24621
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung. 10.1016/j.chom.2017.10.001
Evaluating the impact of domestication and captivity on the horse gut microbiome. 10.1038/s41598-017-15375-9
Erratum: Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity. 10.1038/nature25028
Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes. 10.1128/msystems.00092-17
Social behaviour and gut microbiota in red-bellied lemurs (Eulemur rubriventer): In search of the role of immunity in the evolution of sociality. 10.1111/1365-2656.12781
Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics). 10.1128/mbio.01836-17
Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction. 10.1128/msystems.00188-17
Expanding our Understanding of the Role of the Microbiome in Health and Disease. 10.1016/j.arcmed.2018.02.002
Bacterial density rather than diversity correlates with hatching success across different avian species. 10.1093/femsec/fiy022
Coprolites reveal ecological interactions lost with the extinction of New Zealand birds. 10.1073/pnas.1712337115
Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models. 10.3390/genes9020104
Improving saliva shotgun metagenomics by chemical host DNA depletion. 10.1186/s40168-018-0426-3
KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples. 10.1128/msystems.00218-17
Bacterial community changes in an industrial algae production system. 10.1016/j.algal.2017.09.010
Earth Microbiome Project and Global Systems Biology. 10.1128/msystems.00217-17
Hopanoid-producing bacteria in the Red Sea include the major marine nitrite oxidizers. 10.1093/femsec/fiy063
Integrated Approaches to Analyze Big Data in the Perinatal/Neonatal Space. 10.1089/bfm.2018.29072.rjk
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information. 10.1128/msystems.00021-18
Gut microbiota utilize immunoglobulin A for mucosal colonization. 10.1126/science.aaq0926
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin. 10.1186/s40168-018-0470-z
Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas. 10.1016/j.cels.2018.04.010
Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome. 10.1128/msystems.00020-18
Metagenomics-Based, Strain-Level Analysis of Escherichia coli From a Time-Series of Microbiome Samples From a Crohn's Disease Patient. 10.3389/fmicb.2018.02559
Microbiota as in farm homes protect children from asthma 10.1183/13993003.congress-2018.oa337
Diet and the Gut Microbiome in 10–18-Month-Old Children Living in Urban Slums of Mumbai, India (OR01-08-19) 10.1093/cdn/nzz040.or01-08-19
Neighborhoods to Nucleotides—Advances and Gaps for an Obesity Disparities Systems Epidemiology Model 10.1007/s40471-019-00221-5
Global chemical analysis of biology by mass spectrometry 10.1038/s41570-017-0054
Visualizing 'omic feature rankings and log-ratios using Qurro. 10.1093/nargab/lqaa023
A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis. 10.1016/j.cmet.2020.06.005
Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort. 10.1158/1055-9965.epi-20-0824
Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos. 10.1093/ajcn/nqab001
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. 10.21203/rs.3.rs-56028/v1
Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States. 10.1101/2021.02.06.21251159
The early evolution of the genetic code. 10.1016/s0092-8674(00)80866-1
Measuring adaptation within the genetic code. 10.1016/s0968-0004(99)01531-5
Early fixation of an optimal genetic code. 10.1093/oxfordjournals.molbev.a026331
An amphioxus Krox gene: insights into vertebrate hindbrain evolution. 10.1007/s004270000092
Identification of conserved C2H2 zinc-finger gene families in the Bilateria. 10.1186/gb-2001-2-5-research0016
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. 10.1186/gb-2001-2-4-research0010
Analyzing partially randomized nucleic acid pools: straight dope on doping. 10.1093/nar/gng030
Do universal codon-usage patterns minimize the effects of mutation and translation error? 10.1186/gb-2005-6-11-r91
Information, probability, and the abundance of the simplest RNA active sites. 10.2741/3137
Systems biology: Understanding function from genes to networks 10.2174/157016409788680974
The mind-body-microbial continuum. 10.31887/dcns.2011.13.1/agonzalez
Analytic Strategies for Understanding Host-Associated Microbial Communities: Faster and cheaper DNA sequencing technologies combined with open-access analytic software packages are opening new vistas 10.1128/microbe.6.389.1
Human microbiome science: Vision for the future, Bethesda, MD, July 24 to 26, 2013 10.1186/2049-2618-2-16
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. 10.1038/nbt0718-660a
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. 10.7554/elife.01104
Ret function in muscle stem cells points to tyrosine kinase inhibitor therapy for facioscapulohumeral muscular dystrophy. 10.7554/elife.11405
Ricardo da Silva
da Silva Ricardo
ORCID: 0000-0001-6378-0479
Computational Removal of Undesired Mass Spectral Features Possessing Repeat Units via a Kendrick Mass Filter 10.1007/s13361-018-2069-9
Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome 10.1186/s40168-019-0636-3
A comparative venomic fingerprinting approach reveals that galling and non-galling fig wasp species have different venom profiles 10.1371/journal.pone.0207051
American Gut: an Open Platform for Citizen Science Microbiome Research 10.1128/mSystems.00031-18
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation 10.1021/acs.jnatprod.7b00737
Chemical profiling of two congeneric sea mat corals along the Brazilian coast: adaptive and functional patterns 10.1039/c7cc08411k
Niche partitioning of a pathogenic microbiome driven by chemical gradients 10.1126/sciadv.aau1908
Propagating annotations of molecular networks using in silico fragmentation 10.1371/journal.pcbi.1006089
Targeted Isolation of Neuroprotective Dicoumaroyl Neolignans and Lignans from Sageretia theezans Using in Silico Molecular Network Annotation Propagation-Based Dereplication 10.1021/acs.jnatprod.8b00292
Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples 10.1021/acs.analchem.7b01381
Global chemical analysis of biology by mass spectrometry 10.1038/s41570-017-0054
High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter 10.3389/fmars.2017.00405
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols 10.1021/acsjnatprod.6b00722
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung 10.1016/j.chom.2017.10.001
Application of MALDI Mass Spectrometry in Natural Products Analysis 10.1055/s-0042-104800
From Sample to Multi-Omics Conclusions in under 48 Hours 10.1128/mSystems.00038-16
Lifestyle chemistries from phones for individual profiling 10.1073/pnas.1610019113
A metabolomic protocol for plant systematics by matrix-assisted laser-desorption/ionization time-of flight mass spectrometry 10.1016/j.aca.2015.01.002
Illuminating the dark matter in metabolomics 10.1073/pnas.1516878112
Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing 10.1039/c3np70086k
ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics 10.1093/bioinformatics/btu019
Queen signals in a stingless bee: suppression of worker ovary activation and spatial distribution of active compounds 10.1038/srep07449
Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1111/tpj.14292
Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis 10.1128/MSYSTEMS.00375-19
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages 10.1016/J.FOODCHEM.2019.125290
In silico annotation of discriminative markers of three Zanthoxylum species using molecular network derived annotation propagation 10.1016/J.FOODCHEM.2019.05.099
Investigation of Premyrsinane and Myrsinane Esters in Euphorbia cupanii and Euphobia pithyusa with MS2LDA and Combinatorial Molecular Network Annotation Propagation 10.1021/ACS.JNATPROD.8B00916
The impact of skin care products on skin chemistry and microbiome dynamics 10.1186/S12915-019-0660-6
Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L 10.3389/FPLS.2019.00846
Initial Development toward Non-Invasive Drug Monitoring via Untargeted Mass Spectrometric Analysis of Human Skin 10.1021/ACS.ANALCHEM.8B05854
Mass spectrometry searches using MASST 10.1038/s41587-019-0375-9
Differences in Cystic Fibrosis-Associated Burkholderia spp. Bacteria Metabolomes after Exposure to the Antibiotic Trimethoprim 10.1021/acsinfecdis.9b00513
Global chemical effects of the microbiome include new bile-acid conjugations 10.1038/s41586-020-2047-9
Assessing specialized metabolite diversity of Alnus species by a digitized LC–MS/MS data analysis workflow 10.1016/j.phytochem.2020.112292
Feature-based molecular networking in the GNPS analysis environment 10.1038/s41592-020-0933-6
Time-Scale Shifting of Volatile Semiochemical Levels in Wild Type Lychnophora ericoides (Brazilian arnica) and Pollinator Records 10.1055/a-1320-4556
Distinct photo-oxidation-induced cell death pathways lead to selective killing of human breast cancer cells 10.1038/s41419-020-03275-2
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria 10.3390/md19010020
Convergent evolution of pain-inducing defensive venom components in spitting cobras 10.1126/science.abb9303
Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden 10.1128/msystems.00601-21
REDES MOLECULARES: UMA ANÁLISE SOBRE ANOTAÇÕES E DESCOBERTA DE NOVOS ATIVOS 10.21577/0100-4042.20170777
CHAPTER 10. Perspectives for the Future 10.1039/9781788010399-00264
CHAPTER 3. Metabolomics 10.1039/9781788010399-00057
Mass Spectrometry in Chemical Biology 10.1039/9781788010399
Norberto Peporine Lopes
Peporine Lopes Norberto
ORCID: 0000-0002-8159-3658
A Simple Defined Medium for the Production of True Diketopiperazines in Xylella fastidiosa and Their Identification by Ultra-Fast Liquid Chromatography-Electrospray Ionization Ion Trap Mass Spectrometry 10.3390/molecules22060985
A soluble recombinant form of human leucocyte antigen-G 6 (srHLA-G6) 10.1016/j.bbrc.2017.03.149
An UPLC-MS/MS Method for Determination of Vicenin-2 and Lychnopholic Acid in Rat Plasma and its Application to a Pharmacokinetic Study 10.21577/0103-5053.20160249
Antibacterial activity of Limonium brasiliense (Baicuru) against multidrug-resistant bacteria using a statistical mixture design 10.1016/j.jep.2017.01.013
Antinociceptive Effect of the Essential Oil from Croton conduplicatus Kunth (Euphorbiaceae) 10.3390/molecules22060900
Apigenin-7-O-glucoside oxidation catalyzed by P450-bioinspired systems 10.1016/j.jinorgbio.2017.02.016
Chemical Constituents of Psychotria nemorosa Gardner and Antinociceptive Activity 10.21577/0103-5053.20160219
Dereplication of Flavonoid Glycoconjugates from Adenocalymma imperatoris-maximilianii by Untargeted Tandem Mass Spectrometry-Based Molecular Networking 10.1055/s-0042-118712
Direct Analyses of Secondary Metabolites by Mass Spectrometry Imaging (MSI) from Sunflower (Helianthus annuus L.) Trichomes 10.3390/molecules22050774
Identification of compounds from non-polar fractions of Blechnum spp and a multitarget approach involving enzymatic modulation and oxidative stress 10.1111/jphp.12653
In Vitro Inhibition of Human CYP450s 1A2, 2C9, 3A4/5, 2D6 and 2E1 by Grandisin 10.1055/s-0042-124615
In vitro metabolism studies of natural products are crucial in the early development of medicines 10.1007/s11101-016-9482-0
Influence of season, drying temperature and extraction time on the yield and chemical composition of 'marmeleiro' (Croton sonderianus) essential oil 10.1080/10412905.2016.1178183
Inhibitory Effects of Hydroethanolic Leaf Extracts of Kalanchoe brasiliensis and Kalanchoe pinnata (Crassulaceae) against Local Effects Induced by Bothrops jararaca Snake Venom (vol 11, e0168658, 2016) 10.1371/journal.pone.0172598
Lapachol, a compound targeting pyrimidine metabolism, ameliorates experimental autoimmune arthritis 10.1186/s13075-017-1236-x
Naturally occurring fluorescence in frogs 10.1073/pnas.1701053114
New cascarosides from Rhamnus purshiana and fragmentation studies of the class by ion trap mass spectrometry 10.1002/rcm.7883
Phytochemical Study of Tapirira guianensis Leaves Guided by Vasodilatory and Antioxidant Activities 10.3390/molecules22020304
Precursor Ion Scan Mode-Based Strategy for Fast Screening of Polyether lonophores by Copper-Induced Gas-Phase Radical Fragmentation Reactions 10.1021/acs.analchem.6b02855
The Caatinga endemic Manilkara rufula possesses remarkable activity against Trichomonas vaginalis and Tritrichomonas foetus 10.1016/j.exppara.2016.12.006
The Hydroalcoholic Extract of Leaves of Mandevilla moricandiana Induces NO-Mediated Vascular Relaxation 10.1055/s-0042-108203
Understanding the fragmentation mechanisms of methoxy-, mesyl-, and tosyl-lapachol derivatives by computational chemistry and mass spectrometry analysis 10.1016/j.ijms.2016.11.012
Use of GC/MS to identify chemical constituents and cytotoxic activity of the leaves of Phoradendron mucronatum and Phoradendron microphyllum (Viscaceae) 10.1590/0001-3765201720160586
7,7-Dimethylaporphine and Other Alkaloids from the Bark of Guatteria friesiana 10.1021/acs.jnatprod.5b01037
Acetaminophen Prodrug: Microwave-Assisted Synthesis and in vitro Metabolism Evaluation by Mass Spectrometry 10.5935/0103-5053.20160005
Anti-inflammatory activity of aqueous extract and bioactive compounds identified from the fruits of Hancornia speciosa Gomes (Apocynaceae) 10.1186/s12906-016-1259-x
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In vitro metabolism of monensin A: microbial and human liver microsomes models 10.3109/00498254.2013.845707
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Amazonian Brazilian medicinal plants described by CFP von Martius in the 19th century 10.1016/j.jep.2013.02.030
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Electronic structure and gas-phase chemistry of protonated alpha- and beta-quinonoid compounds: a mass spectrometry and computational study 10.1002/rcm.6519
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Flavanone glycosides from Bidens gardneri Bak. (Asteraceae) 10.1016/j.phytochem.2013.09.024
H-2 unimolecular elimination in electrospray ionization mass spectrometry from erythraline, a spirocyclic alkaloid 10.1255/ejms.1243
In vitro metabolism study of the promising anticancer agent the lignan (-)-grandisin 10.1016/j.jpba.2012.08.028
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Parawixin2, a novel non-selective GABA uptake inhibitor from Parawixia bistriata spider venom, inhibits pentylenetetrazole-induced chemical kindling in rats. 10.1016/j.neulet.2013.02.074
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Task-Related Variation of Cuticular Hydrocarbon Profiles Affect Nestmate Recognition in the Giant ant Dinoponera quadriceps 10.1007/s10905-012-9353-5
A new HPLC-DAD-MS/MS method for the simultaneous determination of major compounds in the crude extract of Lychnophora salicifolia Mart. (Brazilian arnicao) leaves: Application to chemical variability evaluation 10.1016/j.aca.2012.08.027
Analysis of Insect Cuticular Compounds by Non-lethal Solid Phase Micro Extraction with Styrene-Divinylbenzene Copolymers 10.1007/s10886-012-0109-7
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Apolar Compounds in Seaweeds from Fernando de Noronha Archipelago (Northeastern Coast of Brazil) 10.1155/2012/431954
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Evaluation of the in vitro antioxidant properties and the cytotoxicity of lychnophora salicifolia mart. extract 10.1016/j.freeradbiomed.2012.08.216
Exogenous influences on plant secondary metabolite levels 10.1016/j.anifeedsci.2012.07.002
Fundamentals and Applications of Analytical Chemistry in Natural Products 10.1155/2012/156201
Gas-phase reactivity of 2-hydroxy-1,4-naphthoquinones: a computational and mass spectrometry study of lapachol congeners 10.1002/jms.3101
Gas-phase reactivity of protonated 2-oxazoline derivatives: mass spectrometry and computational studies 10.1002/rcm.6182
Megastigmanes from Aleurites moluccana (L.) Willd. (Euphorbiaceae) 10.1016/j.bse.2011.09.014
Meroterpenes isolated from the endophytic fungus Guignardia mangiferae 10.1016/j.phytol.2012.05.004
Novel sesquiterpene lactones from Eremanthus seidelii 10.1016/j.tetlet.2012.09.007
Pre-clinical pharmacokinetics of the acridine antitumour candidate AC04 and its 1-oxo-metabolite plasma profile 10.3109/00498254.2011.654000
Secondary metabolites from Spirotropis longifolia (DC) Baill and their antifungal activity against human pathogenic fungi 10.1016/j.phytochem.2011.10.011
Structure Elucidation and Anticancer Activity of 7-Oxostaurosporine Derivatives from the Brazilian Endemic Tunicate Eudistoma vannamei 10.3390/md10051092
Synthesizing Software Verifiers from Proof Rules 10.1145/2345156.2254112
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Antileishmanial Sesquiterpenes from the Brazilian Red Alga Laurencia dendroidea 10.1055/s-0030-1250526
Application of the Atoms in Molecules Theory and Computational Chemistry in Mass Spectrometry Analysis of 1,4-Naphthoquinone Derivatives 10.1021/jp203912d
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Effects of chlorogenic acid on neutrophil locomotion functions in response to inflammatory stimulus 10.1016/j.jep.2011.02.033
Generation of Naphthoquinone Radical Anions by Electrospray Ionization: Solution, Gas-Phase, and Computational Chemistry Studies 10.1021/jp202322n
Metabolism evaluation of the anticancer candidate AC04 by biomimetic oxidative model and rat liver microsomes 10.1016/j.ejmech.2011.06.029
Neurobiological activity of Parawixin 10, a novel anticonvulsant compound isolated from Parawixia bistriata spider venom (Araneidae: Araneae) 10.1016/j.yebeh.2011.05.008
Patent Literature on Mosquito Repellent Inventions which Contain Plant Essential Oils - A Review 10.1055/s-0030-1270723
Plant Extracts, Isolated Phytochemicals, and Plant-Derived Agents Which Are Lethal to Arthropod Vectors of Human Tropical Diseases - A Review 10.1055/s-0030-1270949
Re-examination of the anion derivatives of isoflavones by radical fragmentation in negative electrospray ionization tandem mass spectrometry: experimental and computational studies 10.1002/rcm.5075
Selectivity in reduction of natural furanoheliangolides with Stryker's reagent 10.1039/c1ob05734k
The application of "double isolation" in Fourier transform ion cyclotron resonance sustained off-resonance irradiation collisionally-induced dissociation tandem mass spectrometry to remove labile isobaric impurities 10.1255/ejms.1145
The Protective Role of Lychnophora ericoides Mart. (Brazilian Arnica) in 1,2-Dimethylhydrazine-Induced Experimental Colon Carcinogenesis 10.1080/01635581.2011.539310
Validation of a gas chromatographic method to quantify sesquiterpenes in copaiba oils 10.1016/j.jpba.2010.10.006
Alkaloids from Stems of Esenbeckia leiocarpa Engl. (Rutaceae) as Potential Treatment for Alzheimer Disease 10.3390/molecules15129205
Antimicrobial activity of Aegiphila sellowiana Cham., Lamiaceae, against oral pathogens 10.1590/S0102-695X2010000200018
Dereplication of Bromotyrosine-derived Metabolites by LC-PDA-MS and Analysis of the Chemical Profile of 14 Aplysina Sponge Specimens from the Brazilian Coastline 10.1071/CH09616
Differential Metabolic and Biological Profiles of Lychnophora ericoides Mart. (Asteraceae) from Different Localities in the Brazilian "campos rupestres" 10.1590/S0103-50532010000400023
Diketopiperazines produced by endophytic fungi found in association with two Asteraceae species 10.1016/j.phytochem.2010.05.012
Electrospray MS-based characterization of beta-carbolines - mutagenic constituents of thermally processed meat 10.1002/mnfr.200900064
Fragmentation studies and electrospray ionization mass spectrometry of lapachol: protonated, deprotonated and cationized species 10.1002/rcm.4625
Fungal tyrosine betaine, a novel secondary metabolite from conidia of entomopathogenic Metarhizium spp. fungi 10.1016/j.funbio.2010.03.009
IN VITRO STUDY OF ANTIOXIDANT AND SCAVENGER PROPERTIES OF PHENOLIC COMPOUNDS FROM Lychnophora SPECIES 10.1590/S0100-40422010000400019
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New Ceramides from Acnistus arborescens 10.1590/S0103-50532010000500014
The cuticular hydrocarbons profiles in the stingless bee Melipona marginata reflect task-related differences 10.1016/j.jinsphys.2010.02.004
3'3-Ditrifluoromethyldiphenyl diselenide: A new organoselenium compound with interesting antigenotoxic and antimutagenic activities 10.1016/j.mrgentox.2009.01.003
A reunião anual itinerante vale o quanto custa? 10.1590/S0100-40422009000500001
Chemical Signals in the Stingless Bee, Frieseomelitta varia, Indicate Caste, Gender, Age, and Reproductive Status 10.1007/s10886-009-9691-8
Gas-phase dissociation of 1,4-naphthoquinone derivative anions by electrospray ionization tandem mass spectrometry 10.1002/jms.1600
Gas-phase fragmentation of gamma-lactone derivatives by electrospray ionization tandem mass spectrometry 10.1002/jms.1682
Inhibitory effects of Solidago chilensis Meyen hydroalcoholic extract on acute inflammation 10.1016/j.jep.2009.01.029
Rapid Screening and Identification of Polar Constituents from Brazilian Arnica Lychnophora sp by LC-UV/DAD-ESI-MS and LC-UV/DAD-ESI-MS/MS Analysis 10.1365/s10337-009-1036-9
Synthesis of Phthalocyanines-ALA Conjugates: Water-Soluble Compounds with Low Aggregation 10.1021/jo901633a
A theoretical and mass spectrometry study of the fragmentation of mycosporine-like amino acids 10.1016/j.ijms.2008.02.014
Antileukemic effects of Didemnum psammatodes (Tunicata: Ascidiacea) constituents 10.1016/j.cbpa.2007.02.011
Application of high-resolution electrospray mass spectrometry for the elucidation of the disproportionation reaction of iodobenzene diacetate 10.1016/j.ijms.2008.06.012
Biological activities from extracts of endophytic fungi isolated from Viguiera arenaria and Tithonia diversifolia 10.1111/j.1574-695X.2007.00354.x
Characterization of interactions between polyphenolic compounds and human serum proteins by capillary electrophoresis 10.1007/s00216-008-2046-4
Comparative analysis of the gas-phase reactions of cylindrospermopsin and the difference in the alkali metal cation mobility 10.1002/rcm.3567
Cytotoxic activity of a dichloromethane extract and fractions obtained from Eudistoma vannamei (Tunicata: Ascidiacea) 10.1016/j.cbpa.2007.02.018
Detailed H-1 and C-13 NMR structural assignment and relative stereochemistry determination for three closely related sesquiterpene lactones 10.1002/mrc.2220
Glycosides, caffeoylquinic acids and flavonoids from the polar extract of leaves of Lychnophora ericoides Mart. (Asteraceae) 10.1016/j.bse.2007.12.002
Ion fluxes and hematological parameters of two teleosts from the Rio Negro, Amazon, exposed to hypoxia 10.1590/S1519-69842008000300015
Negative ion 'chip-based' nanospray tandem mass spectrometry for the analysis of flavonoids in glandular trichomes of Lychnophora ericoides Mart. (Asteraceae) 10.1002/rcm.3802
Nestmate recognition in a stingless bee: does the similarity of chemical cues determine guard acceptance? 10.1016/j.anbehav.2007.08.028
Neuropharmacological effects in mice of Lychnophora species (Vernonieae, Asteraceae) and anticonvulsant activity of 4,5-di-O-[E]-caffeoylquinic acid isolated from the stem of L-rupestris and L-staavioides 10.1111/j.1742-7843.2007.00194.x
Online identification of chlorogenic acids, sesquiterpene lactones, and flavonoids in the Brazilian arnica Lychnophora ericoides Mart. (Asteraceae) leaves by HPLC-DAD-MS and HPLC-DAD-MS/MS and a validated HPLC-DAD method for their simultaneous analysis 10.1021/jf072812l
Sesquiterpene lactones and flavonoids from Lychnophora reticulata Gardn. (Asteraceae) 10.1016/j.bse.2007.09.010
Volatile Retention and Antifungal Properties of Spray-Dried Microparticles of Lippia sidoides Essential Oil 10.1080/07373930802464034
A new high-performance liquid chromatography assay for the determination of sesquiterpene lactone 15-deoxygoyazensolide in rat plasma 10.1016/j.aca.2007.08.034
Biochemical physiology of hypoxia in fish 10.1016/j.cbpa.2007.06.151
Differential ionisation of natural antioxidant polyenes in electrospray and nanospray mass spectrometry 10.1002/rcm.3286
Fragmentation of diketopiperazines from Aspergillus fumigatus by electrospray ionization tandem mass spectrometry (ESI-MS/MS) 10.1002/jms.1166
Fragmentation studies of monensin A and B in negative electrospray and nanospray tandem mass spectrometry 10.1255/ejms.874
Genotoxicity of 15-deoxygoyazensolide in bacteria and yeast 10.1016/j.mrgentox.2007.04.002
Influence of biochemical, mineral and morphological features of natural food on tropical cladocerans 10.1007/s10452-007-9117-z
Inhibition of acute nociceptive responses in rats after i. c. v. injection of Thr(6)-bradykinin, isolated from the venom of the social wasp, Polybia occidentalis 10.1038/sj.bjp.0707275
Inhibition of horseradish peroxidase catalytic activity by new 3-phenyleoumarin derivatives: Synthesis and structure-activity relationships 10.1016/j.bmc.2006.10.068
Liquid chromatography-tandem mass spectrometric method for determination of the anti-inflammatory compound vicenin-2 in the leaves of L-ericoides Mart. 10.1002/bmc.828
Medicinal plants: Factors of influence on the content of secondary metabolites 10.1590/S0100-40422007000200026
Metabolites from algae with economical impact 10.1016/j.cbpc.2006.05.007
Neuropharmacological profile of FrPbAII, purified from the venom of the social spider Parawixia bistriata (Araneae, Araneidae), in Wistar rats 10.1016/j.lfs.2006.10.002
Permeability profile estimation of flavonoids and other phenolic compounds by biopartitioning micellar capillary chromatography 10.1021/jf070730r
Radical ion generation processes of organic compounds in electrospray ionization mass spectrometry 10.2174/157019307779815910
Differences in secondary metabolites from leaf extracts of Mikania glomerata Sprengel obtained by micropropagation and cuttings 10.1590/S0102-695X2006000500003
Evaluation of the anti-inflammatory, analgesic and antipyretic activities of the natural polyphenol chlorogenic acid 10.1248/bpb.29.2236
Fragmentation studies of synthetic 2-acylamino-1,4-naphthoquinones by electrospray ionization mass spectrometry 10.1002/jms.1092
Influence of the alkali metal cation on the fragmentation of monensin in ESI-MS/MS 10.1590/S1516-93322006000300006
Letter: Radical ion and protonated molecule formation with retinal in electrospray and nanospray 10.1255/ejms.784
Mechanism for the elimination of aromatic molecules from polyenes in tandem mass spectrometry 10.1039/b609672g
Neurochemical characterization of a neuroprotective compound from Parawixia bistriata spider venom that inhibits synaptosomal uptake of GABA and glycine 10.1124/mol.105.017319
Variabilidade sazonal do teor de saponinas de Baccharis trimera (Less.) DC (Carqueja) e isolamento de flavona 10.1590/S0102-695X2006000400020
A study on the species present in solutions of hypervalent iodine(III) reagents by electrospray ionization mass spectrometry 10.1016/j.tetlet.2005.07.012
Analgesic activity of di-caffeoylquinic acids from roots of Lychnophora ericoides (Arnica da serra) 10.1016/j.jep.2004.09.043
Balance of xanthophylls molecular and protonated molecular ions in electrospray ionization 10.1002/jms.874
Biomimetic oxidation of praziquantel catalysed by metalloporphynins 10.1016/j.molcata.2004.09.015
Electrospray ionization mass spectrometry screening of piperidine alkaloids from Senna spectabilis (Fabaceae) extracts: Fast identification of new constituents and co-metabolites 10.1590/S0103-50532005000800023
Evaluation of the anti-inflammatory and antioxidant activities of di-C-glucosylflavones from Lychnophora ericoides (Asteraceae) 10.1055/s-2005-837742
Metabolic adjustments in two Amazonian cichlids exposed to hypoxia and anoxia 10.1016/j.cbpc.2005.04.006
Oxidative metabolism of 5-o-caffeoylquinic acid (chlorogenic acid), a bioactive natural product, by metalloporphyrin and rat liver mitochondria 10.1016/j.ejps.2005.04.014
Triple quadrupole tandem mass spectrometry of sesquiterpene lactones: a study of goyazensolide and its congeners 10.1002/jms.877
A anticonvulsive fraction from Scaptocosa raptoria (Araneae : Lycosidae) spider venom 10.1016/j.neulet.2004.08.064
Biosynthesis of tetrahydrofuran lignans in Virola surinamensis 10.1590/S1516-93322004000100009
Evidence for gas-phase redox chemistry inducing novel fragmentation in a complex natural product 10.1039/b311871a
Flavonoids from Lychnophora passerina (Asteraceae): potential antioxidants and UV-protectants 10.1016/j.bse.2003.08.003
Fragmentation studies on tetronasin by accurate-mass electrospray tandem mass spectrometry 10.1016/j.jasms.2003.10.020
Influence of air on polybutadiene used in the preparation of stationary phases for high-performance liquid chromatography 10.1016/j.chroma.2003.12.035
Inhibitory activity of flavonoids from Lychnophora sp on generation of reactive oxygen species by neutrophils upon stimulation by immune complexes 10.1002/ptr.1368
New butenolides in plandets of Virola surinamensis (Myristicaceae) 10.1248/cpb.52.1255
New chemical evidence for the ability to generate radical molecular ions of polyenes from ESI and HR-MALDI mass spectrometry 10.1039/b412154f
The biological activity in mammals and insects of the nucleosidic fraction from the spider Parawixia bistriata 10.1016/j.toxicon.2004.01.009
The fragmentation mechanism of five-membered lactones by electrospray ionisation tandem mass spectrometry 10.1016/j.ijms.2004.02.009
Total assignment of H-1 and C-13 NMR data for the sesquiterpene lactone 15-deoxygoyazensolide 10.1002/mrc.1314
Triterpenoids and flavonoids from Lychnophoriopsis candelabrum (Asteraceae) 10.1016/j.bse.2003.11.001
Effects of essential fatty acids and N and P-limited algae on the growth rate of tropical cladocerans 10.1046/j.1365-2427.2003.01048.x
Enantioselective determination of metoprolol acidic metabolite in plasma and urine using liquid chromatography chiral columns: applications to pharmacokinetics 10.1016/S1570-0232(02)00705-5
Novel gas-phase ion-molecule aromatic nucleophilic substitution in beta-carbolines 10.1039/b210117c
Preparation of a polybutadiene stationary phase immobilized by gamma radiation for reversed-phase high-performance liquid chromatography 10.1016/S0021-9673(02)01658-8
Quantification of furanoheliangolides by HPLC and GC 10.1590/S1516-93322003000300014
Sesquiterpene lactones from Lychnophora ericoides 10.1021/np020314v
Sodium monensin dihydrate 10.1107/S1600536803022980
The effect of ruthenium(II) chloride on the formation of protonated parent ions in electrospray mass spectrometry 10.1039/b309913j
Trypanocidal activity of Lychnophora staavioides Mart. (Vernonieae, Asteraceae) 10.1078/094471103322331430
Fragmentation studies on lasalocid acid by accurate mass electrospray mass spectrometry 10.1039/b201662a
Fragmentation studies on monensin A and B by accurate-mass electrospray tandem mass spectrometry 10.1002/rcm.592
Fragmentation studies on monensin A by sequential electrospray mass spectrometry 10.1039/b110412h
Phytochemical study of Lychnophora markgravii (Asteraceae) 10.1016/S0305-1978(01)00127-2
A study of the effect of pH, solvent system, cone potential and the addition of crown ethers on the formation of the monensin protonated parent ion in electrospray mass spectrometry 10.1039/b106852k
Analgesic activity of the lignans from Lychnophora ericoides 10.1016/S0031-9422(00)00388-5
Brazilian species of Viguiera (Asteraceae) exhibit low levels of its sequence variation 10.1017/S0960428600000330
Peridinin as the major biological carotenoid quencher of singlet oxygen in marine algae Gonyaulax polyedra 10.1006/bbrc.2000.2142
Phenylpropanoid derivatives and biflavones at different stages of differentiation and development of Araucaria angustifolia 10.1016/S0031-9422(00)00239-9
Antifungal constituents from roots of Virola surinamensis 10.1016/S0031-9422(98)00709-2
Antimalarial use of volatile oil from leaves of Virola surinamensis (Rol.) Warb. by Waiapi Amazon Indians 10.1016/S0378-8741(99)00072-0
Butanolides as a common feature of Iryanthera lancifolia and Virola surinamensis 10.1016/S0031-9422(97)01092-3
Flavonoids and lignans from Virola surinamensis twigs and their in vitro activity against Trypanosoma cruzi 10.1055/s-2006-957548
Circadian and seasonal variation in the essential oil from Virola surinamensis leaves 10.1016/S0031-9422(97)00324-5
Lignans, gamma-lactones and propiophenones of Virola surinamensis 10.1016/S0031-9422(96)00408-6
THE CHEMISTRY OF BRAZILIAN MYRISTICACEAE .36. A BUTANOLIDE FROM SEEDLINGS AND MICROPROPAGATED LEAVES OF VIROLA-SURINAMENSIS 10.1016/S0031-9422(00)86877-6
Global chemical analysis of biology by mass spectrometry 10.1038/s41570-017-0054
Evolution of queen cuticular hydrocarbons and worker reproduction in stingless bees 10.1038/s41559-017-0185
Disease Modifying Effects of the Spider Toxin Parawixin2 in the Experimental Epilepsy Model 10.3390/toxins9090262
Gas-phase fragmentation of protonated piplartine and its fungal metabolites using tandem mass spectrometry and computational chemistry 10.1002/jms.3955
Gas-phase dissociation study of erythrinian alkaloids by electrospray ionization mass spectrometry and computational methods 10.1002/jms.3962
Fragmentation pathway and structural characterization of new glycosylated phenolic derivatives from Eremanthus glomerulatus Less (Asteraceae) by electrospray ionization tandem mass spectrometry 10.1002/jms.3982
An integrative omics perspective for the analysis of chemical signals in ecological interactions 10.1039/C7CS00368D
Natural Products Chemistry: What’s the Next Step? 10.1021/acsomega.7b01671
Base-Controlled Regioselective Functionalization of Chloro-Substituted Quinolines 10.1021/acs.joc.7b02855
Degradation of atrazine by Pseudomonas sp and Achromobacter sp isolated from Brazilian agricultural soil 10.1016/j.ibiod.2018.03.011
Anti-cancer activity of a new dihydropyridine derivative, VdiE-2N, in head and neck squamous cell carcinoma 10.1016/j.ejphar.2017.12.009
Chemical profiling of two congeneric sea mat corals along the Brazilian coast: adaptive and functional patterns 10.1039/c7cc08411k
Dereplication by HPLC-DAD-ESI-MS/MS and Screening for Biological Activities of Byrsonima Species (Malpighiaceae) 10.1002/pca.2734
Propagating annotations of molecular networks using in silico fragmentation 10.1371/journal.pcbi.1006089
Inhibition of Breast Cancer Cell Migration by Cyclotides Isolated from Pombalia calceolaria 10.1021/acs.jnatprod.7b00969
Cleavage of Peptides from Amphibian Skin Revealed by Combining Analysis of Gland Secretion and in Situ MALDI Imaging Mass Spectrometry 10.1021/acsomega.7b02029
Fragmentation pattern of amides by EI and HRESI: study of protonation sites using DFT-3LYP data 10.1039/C7RA00408G
Iontophoresis-stimulated silk fibroin films as a peptide delivery system for wound healing 10.1016/j.ejpb.2018.04.019
Ketalization of Ketones to 1,3-Dioxolanes and Concurring Self-Aldolization Catalyzed by an Amorphous, Hydrophilic SiO2-SO3H Catalyst under Microwave Irradiation 10.21577/0103-5053.20180039
Mass Spectrometry Analysis of Protonated Marine Natural Product Seriniquinone 10.21577/0103-5053.20180037
Revisiting empirical rules for the determination of the absolute configuration of cascarosides and other (ox-)anthrones 10.1002/chir.22803
The role of tannins as antiulcer agents: a fluorescence-imaging based study 10.1016/j.bjp.2018.03.011
Aflatoxins produced by Aspergillus nomius ASR3, a pathogen isolated from the leaf-cutter ant Atta sexdens rubropilosa 10.1016/j.bjp.2017.05.001
Alternaria toxins in South African sunflower seeds: cooperative study 10.1007/s12550-017-0290-1
Biological activities and phytochemical profile of Passiflora mucronata from the Brazilian restinga 10.1016/j.bjp.2017.07.005
Copaiba Oil and Its Constituent Copalic Acid as Chemotherapeutic Agents against Dermatophytes 10.21577/0103-5053.20160309
Development and validation of a quantification method for cucurbitacins E and I in rat plasma: Application to population pharmacokinetic studies 10.1016/j.jpba.2017.02.021
Inactivation of beta-Lapachone Cytotoxicity by Filamentous Fungi that Mimic the Human Blood Metabolism 10.1007/s13318-016-0337-2
Method Indicative of Stability for the Determination of Rifaximin and Its Degradation Products by Thin Chromatographic 10.2174/1573412912666160801103712
Spatial and Temporal Variations in Secondary Metabolites Content of the Brazilian Arnica Leaves (Lychnophora ericoides Mart., Asteraceae) 10.21577/0103-5053.20170092
Isolation and Identification of the Five Novel Flavonoids from Genipa americana Leaves 10.3390/molecules23102521
Parawixin2 Protects Hippocampal Cells in Experimental Temporal Lobe Epilepsy 10.3390/toxins10120486
New Perspectives on Chlorogenic Acid Accumulation in Harvested Leaf Tissue: Impact on Traditional Medicine Preparations 10.1021/acsomega.8b02409
In vitro anti-Trypanosoma cruzi activity of ternary copper(II) complexes and in vivo evaluation of the most promising complex 10.1016/j.biopha.2018.10.057
A comparative venomic fingerprinting approach reveals that galling and non-galling fig wasp species have different venom profiles 10.1371/journal.pone.0207051
A Cyclotide Isolated from Noisettia orchidiflora (Violaceae) 10.1055/a-0632-2204
Crystal structure of two new polymeric copper(II) complexes active against Trypanosoma cruzi 10.1016/j.jscs.2018.01.002
Leishmanicidal Effects of Piperlongumine (Piplartine) and Its Putative Metabolites 10.1055/a-0614-2680
Metabolomic Fingerprinting of Salinispora From Atlantic Oceanic Islands 10.3389/fmicb.2018.03021
MOBILIZING AXES IN CHEMISTRY: A SHORT LOOK 15 YEARS LATER 10.21577/0100-4042.20170296
Paenibacillus polymyxa Associated with the Stingless Bee Melipona scutellaris Produces Antimicrobial Compounds against Entomopathogens 10.1007/s10886-018-1028-z
Phytochemical and chemotaxonomy investigation of polar crude extract from Eremanthus incanus (Asteraceae, Vernonieae) 10.1016/j.bse.2018.10.009
Spondias tuberosa inner bark extract exert antidiabetic effects in streptozotocin-induced diabetic rats 10.1016/j.jep.2018.08.038
Characterization of Casearin X Metabolism by Rat and Human Liver Microsomes 10.1055/a-0765-9523
Chemical analysis of Brasilimeria Stach, 1949 (Hexapoda, Collembola, Neanuridae) hemolymphatic secretion, and description of a new species 10.1371/journal.pone.0212451
Exploring integument transcriptomes, cuticle ultrastructure, and cuticular hydrocarbons profiles in eusocial and solitary bee species displaying heterochronic adult cuticle maturation 10.1371/journal.pone.0213796
How Many More Brumadinhos and Marianas Will We be Faced with Yet? 10.21577/0103-5053.20190034
Intra-clade metabolomic profiling of MAR4 Streptomyces from the Macaronesia Atlantic region reveals a source of anti-biofilm metabolites 10.1111/1462-2920.14529
Symbiotic skin bacteria as a source for sex-specific scents in frogs 10.1073/pnas.1806834116
Integrating Molecular Network and Culture Media Variation to Explore the Production of Bioactive Metabolites by Vibrio diabolicus A1SM3 10.3390/md17040196
Alternative biodegradation pathway of the herbicide diuron 10.1016/j.ibiod.2019.06.004
Mass Spectral Similarity Networking and Gas-Phase Fragmentation Reactions in the Structural Analysis of Flavonoid Glycoconjugates 10.1021/acs.analchem.8b05479
In vitro inhibition of human CYP2D6 by the chiral pesticide fipronil and its metabolite fipronil sulfone: Prediction of pesticide-drug interactions 10.1016/j.toxlet.2019.07.005
Characterisation of the in vivo interactions between detomidine and methadone in horses: Pharmacokinetic and pharmacodynamic modelling 10.1111/evj.13031
Myclobutanil enantioselective risk assessment in humans through in vitro CYP450 reactions: Metabolism and inhibition studies 10.1016/j.fct.2019.04.009
Acid diterpenes from Copaiba oleoresin (Copaifera langsdorffii): Chemical and plasma stability and intestinal permeability using Caco-2 cells 10.1016/j.jep.2019.02.017
DMH-CBD, a cannabidiol analog with reduced cytotoxicity, inhibits TNF production by targeting NF-kB activity dependent on A2A receptor 10.1016/j.taap.2019.02.011
Evaluation of anti-HSV-1 activity and toxicity of hydroethanolic extract of Tanacetum parthenium (L.) Sch.Bip. (Asteraceae) 10.1016/j.phymed.2018.06.040
Natural Products Diversity in Plant-Insect Interaction between Tithonia diversifolia (Asteraceae) and Chlosyne lacinia (Nymphalidae) 10.3390/molecules24173118
Chemical Diversity in a Stingless Bee–Plant Symbiosis 10.1021/acsomega.9b02096
Pharmacokinetic disposition of erythraline in rats after intravenous administration 10.1016/j.bjp.2019.07.002
Characterization of aporphine alkaloids by electrospray ionization tandem mass spectrometry and density functional theory calculations 10.1002/rcm.8533
Correction to Mass Spectral Similarity Networking and Gas-Phase Fragmentation Reactions in the Structural Analysis of Flavonoid Glycoconjugates 10.1021/acs.analchem.9b04825
Characterization of 3‐aminospirostane alkaloids from roots of Solanum paniculatum L. with hepatoprotective activity 10.1002/rcm.8705
Marine Bacteria from Rocas Atoll as a Rich Source of Pharmacologically Active Compounds 10.3390/md17120671
Metabolomics to Characterize Adaptive and Signaling Responses in Legume Crops under Abiotic Stresses 10.1021/acsomega.9b03668
Rhodnius spp. are differentiated based on the peptide/protein profile by matrix-assisted laser desorption/ionization mass spectrometry and chemometric tools 10.1007/s00216-019-02376-y
Red pepper peptide coatings control Staphylococcus epidermidis adhesion and biofilm formation 10.1016/j.ijpharm.2019.118872
Engineering of galectin-3 for glycan-binding optical imaging 10.1016/j.bbrc.2019.10.161
Dextrorotatory Chromomycins from the Marine Streptomyces sp. Associated to Palythoa caribaeorum 10.21577/0103-5053.20190144
METABOLÔMICA DE PLANTAS: MÉTODOS E DESAFIOS 10.21577/0100-4042.20170499
Involvement of Isoorientin in the Antidepressant Bioactivity of a Flavonoid-Rich Extract from Passiflora edulis f. flavicarpa Leaves 10.1007/s43450-020-00003-x
In Vivo Antidepressant Effect of Passiflora edulis f. flavicarpa into Cationic Nanoparticles: Improving Bioactivity and Safety 10.3390/pharmaceutics12040383
Govaniadine Evaluation of Cytotoxicity and Permeability in Cell Culture 10.1007/s43450-020-00066-w
Fragmentation study of clerodane diterpenes from Casearia species by tandem mass spectrometry (quadrupole time‐of‐flight and ion trap) 10.1002/rcm.8781
The Brazilian Chemical Society – Special issue 10.1002/rcm.8872
Sequesterpene Lactones Isolated from a Brazilian Cerrado Plant (Eremanthus spp.) as Anti-Proliferative Compounds, Characterized by Functional and Proteomic Analysis, Are Candidates for New Therapeutics in Glioblastoma 10.3390/ijms21134713
Multiple origins of green coloration in frogs mediated by a novel biliverdin-binding serpin 10.1073/pnas.2006771117
Plant Natural Products for the Control of Aedes aegypti: The Main Vector of Important Arboviruses 10.3390/molecules25153484
Biomimetic Metabolism of Kaurenoic Acid Validated by Microsomal Reactions 10.1007/s43450-020-00084-8
Insecticidal and inhibitory effects of Meliaceae and Asteraceae extracts to silverleaf whitefly 10.1590/s0102-053620200307
Anticancer Potential of Compounds from the Brazilian Blue Amazon 10.1055/a-1257-8402
Time-Scale Shifting of Volatile Semiochemical Levels in Wild Type Lychnophora ericoides (Brazilian arnica) and Pollinator Records 10.1055/a-1320-4556
The Alkaloid-Enriched Fraction of Pachysandra terminalis (Buxaceae) Shows Prominent Activity against Trypanosoma brucei rhodesiense 10.3390/molecules26030591
A leukotriene-dependent spleen-liver axis drives TNF production in systemic inflammation 10.1126/scisignal.abb0969
Distribution of flavonoids and other phenolics in Mikania species (Compositae) of Brazil 10.1016/j.bse.2021.104273
Enantioselective inhibition of human CYP2C19 by the chiral pesticide ethofumesate: Prediction of pesticide-drug interactions in humans. 10.1016/j.cbi.2021.109552
Eco-Friendly Pharmaceutical Analysis of Rifaximin in Tablets by HPLC-MS and Microbiological Turbidimetry. 10.1093/chromsci/bmab044
Licarin A as a Novel Drug for Inflammatory Eye Diseases. 10.1089/jop.2020.0129
Meningeal dendritic cells-astrocytes interactions elevate the kynurenine metabolic pathway to sustain neuropathic pain 10.1101/2021.01.25.428142
Metabolomic study of marine Streptomyces sp.: Secondary metabolites and the production of potential anticancer compounds. 10.1371/journal.pone.0244385
Associating chitosan and microemulsion as a topical vehicle for the administration of herbal medicines. 10.1016/j.carbpol.2020.117482
Risk assessment of the chiral pesticide fenamiphos in a human model: Cytochrome P450 phenotyping and inhibition studies. 10.1016/j.fct.2020.111826
Molecular basis of carrageenan-induced cytokines production in macrophages. 10.1186/s12964-020-00621-x
Characteristic product ions of acetylene carotenoids by electrospray and nanospray ionization tandem mass spectrometry. 10.1002/rcm.8811
Reference data based insights expand understanding of human metabolomes 10.1101/2020.07.08.194159
Targeting the Oncogenic TBX2 Transcription Factor With Chromomycins. 10.3389/fchem.2020.00110
Prediction of seriniquinone-drug interactions by in vitro inhibition of human cytochrome P450 enzymes. 10.1016/j.tiv.2020.104820
Yangambin and Epi-yangambin Isomers: New Purification Method from Ocotea fasciculata and First Cytotoxic Aspects Focusing on In Vivo Safety. 10.1055/a-1118-3828
Feeding behavior of Brevicoryne brassicae in resistant and susceptible collard greens genotypes: interactions among morphological and chemical factors 10.1111/eea.12897
Mass spectrometry-based metabolomics approach in the isolation of bioactive natural products. 10.1038/s41598-020-58046-y
Identification of flavonoids in Hymenaea martiana Hayne (Fabaceae) by HPLC-DAD-MSn analysis. 10.1080/14786419.2019.1672062
Antifungal compounds from Streptomyces associated with attine ants also inhibit Leishmania donovani. 10.1371/journal.pntd.0007643
Determination of phenolic compounds, in vitro antioxidant activity and characterization of secondary metabolites in different parts of Passiflora cincinnata by HPLC-DAD-MS/MS analysis. 10.1080/14786419.2018.1548445
Exploring integument transcriptomes, cuticle ultrastructure, and cuticular hydrocarbons profiles in eusocial and solitary bee species displaying heterochronic adult cuticle maturation 10.1101/437962
Cytotoxicity of Structurally Diverse Anthranoids and Correlation with Mechanism of Action and Side Effects. 10.18433/jpps30077
Trichomonicidal and parasite membrane damaging activity of bidesmosic saponins from Manilkara rufula. 10.1371/journal.pone.0188531
Dereplication of Natural Products Using GC-TOF Mass Spectrometry: Improved Metabolite Identification by Spectral Deconvolution Ratio Analysis. 10.3389/fmolb.2016.00059
Antimicrobial activity of Aspilia latissima (Asteraceae). 10.1590/s1517-838246420131281
Photostability evaluation of five UV-filters, trans-resveratrol and beta-carotene in sunscreens. 10.1016/j.ejps.2015.07.004
Low expression of CD39 on regulatory T cells as a biomarker for resistance to methotrexate therapy in rheumatoid arthritis. 10.1073/pnas.1424792112
Post-column sodiation to enhance the detection of polyacetylene glycosides in LC-DAD-MS analyses: an example from Bidens gardneri (Asteraceae). 10.1016/j.talanta.2014.12.024
Development of a method to quantify clindamycin in vitreous humor of rabbits' eyes by UPLC-MS/MS: application to a comparative pharmacokinetic study and in vivo ocular biocompatibility evaluation. 10.1016/j.jpba.2014.08.023
Polyphenol-enriched cocoa protects the diabetic retina from glial reaction through the sirtuin pathway. 10.1016/j.jnutbio.2014.09.003
Preparation and in vitro evaluation of α and β-amyrins loaded nanoemulsions. 10.2174/1389201015666140317121647
In vitro metabolism of grandisin, a lignan with anti-chagasic activity. 10.1055/s-0032-1327876
Biomimetic in vitro oxidation of lapachol: a model to predict and analyse the in vivo phase I metabolism of bioactive compounds. 10.1016/j.ejmech.2012.06.042
Concentration of Inorganic Elements Content in Benthic Seaweeds of Fernando de Noronha Archipelago by Synchrotron Radiation Total Reflection X-Ray Fluorescence Analysis (SRTXRF). 10.1155/2012/407274
Pyridine alkaloids from Senna multijuga as acetylcholinesterase inhibitors. 10.1021/np200814j
The potential of secondary metabolites from plants as drugs or leads against protozoan neglected diseases - part I. 10.2174/092986712800229023
Biomimetic oxidation of piperine and piplartine catalyzed by iron(III) and manganese(III) porphyrins. 10.1248/bpb.33.912
Star fruit: simultaneous neurotoxic and nephrotoxic effects in people with previously normal renal function. 10.1093/ndtplus/sfp108
Cuticular hydrocarbons in the stingless bee Schwarziana quadripunctata (Hymenoptera, Apidae, Meliponini): differences between colonies, castes and age. 10.4238/vol8-2kerr012
Identification of biologically active triterpenes and sterols present in hexane extracts from Miconia species using high-resolution gas chromatography. 10.1002/bmc.609
Production of an antiproliferative furanoheliangolide by Lychnophora ericoides cell culture. 10.1248/cpb.52.1433
In vitro trypanocidal activity of triterpenes from miconia species. 10.1055/s-2003-39719
Cucurbitane Triterpene Glycosides from the Roots of Wilbrandia hibiscoides 10.1007/s43450-021-00172-3
In vitro enantioselective inhibition of the main human CYP450 enzymes involved in drug metabolism by the chiral pesticide tebuconazole 10.1016/j.toxlet.2021.08.006
Summary of the Sussex-Huawei locomotion-transportation recognition challenge
Observation of a manifold in the chaotic phase space of an asymmetric optical microcavity
Localized temporal variation of Earth's inner-core boundary from high-quality waveform doublets
Off-axis multi-wavelength dispersion controlling metalens for multi-color imaging
Impact of United States political sanctions on international collaborations and research in Iran