Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology
Sandra Wiegand Mareike Jogler Christian Boedeker Daniela Pinto John Vollmers Elena Rivas-Marín Timo Kohn Stijn H. Peeters Anja Heuer Patrick Rast Sonja Oberbeckmann Boyke Bunk Olga Jeske Anke Meyerdierks Julia E. Storesund Nicolai Kallscheuer Sebastian Lücker Olga M. Lage Thomas Pohl Broder J. Merkel Peter Hornburger Ralph-Walter Müller Franz Brümmer Matthias Labrenz Alfred M. Spormann Huub J. M. Op den Camp Jörg Overmann Rudolf Amann Mike S. M. Jetten Thorsten Mascher Marnix H. Medema Damien P. Devos Anne-Kristin Kaster Lise Øvreås Manfred Rohde Michael Y. Galperin Christian Jogler
Nature Microbiology, 2019-11
https://doi.org/10.1038/s41564-019-0588-1
Ralph-Walter Müller
Müller Ralph-Walter
ORCID: 0000-0002-5001-9047
Planctopirus ephydatiae, a novel Planctomycete isolated from a freshwater sponge 10.1016/j.syapm.2019.126022
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Elena Rivas-Marín
Rivas-Marín Elena
ORCID: 0000-0002-8696-8113
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Development of Genetic Tools for the Manipulation of the Planctomycetes. 10.3389/fmicb.2016.00914
Genetic dissection of independent and cooperative transcriptional activation by the LysR-type activator ThnR at close divergent promoters. 10.1038/srep24538
ThnY is a ferredoxin reductase-like iron-sulfur flavoprotein that has evolved to function as a regulator of tetralin biodegradation gene expression. 10.1074/jbc.m110.184648
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Essentiality of sterol synthesis genes in the planctomycete bacterium Gemmata obscuriglobus 10.1038/s41467-019-10983-7
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Non-essentiality of canonical cell division genes in the planctomycete Planctopirus limnophila 10.1038/s41598-019-56978-8
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Two paralogous EcfG σ factors hierarchically orchestrate the activation of the General Stress Response in Sphingopyxis granuli TFA. 10.1038/s41598-020-62101-z
Thalassoglobus polymorphus sp. nov., a novel Planctomycete isolated close to a public beach of Mallorca Island 10.1007/s10482-020-01437-y
Maioricimonas rarisocia gen. nov., sp. nov., a novel planctomycete isolated from marine sediments close to Mallorca Island 10.1007/s10482-020-01436-z
Julia E. Storesund
Storesund Julia E.
ORCID: 0000-0003-4618-2324
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Linking bacterial community structure to advection and environmental impact along a coast-fjord gradient of the Sognefjord, western Norway 10.1016/j.pocean.2017.09.002
Molecular characterization of the myoliquefactive fish parasite kudoa mirabilis (Cnidaria, kudoidae) from se Indian Ocean and its phylogenetic relationship with the kudoa thyrsites species complex 10.3390/microorganisms8091352
Planctomycetes as a vital constituent of the microbial communities inhabiting different layers of the meromictic lake sælenvannet (Norway) 10.3390/microorganisms8081150
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Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific) 10.1007/s10482-018-1026-8
Seasonality drives microbial community structure, shaping both eukaryotic and prokaryotic host–viral relationships in an arctic marine ecosystem 10.3390/v10120715
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Thorsten Mascher
Mascher Thorsten
ORCID: 0000-0002-6300-5541
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From Modules to Networks: a Systems-Level Analysis of the Bacitracin Stress Response in Bacillus subtilis. 10.1128/msystems.00687-19
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology. 10.1038/s41564-019-0588-1
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The Epipeptide Biosynthesis Locus epeXEPAB Is Widely Distributed in Firmicutes and Triggers Intrinsic Cell Envelope Stress 10.1159/000516750
Michael Galperin
Galperin Michael / Michael Y. Galperin
ORCID: 0000-0002-2265-5572
Email: galperin@ncbi.nlm.nih.gov
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New feel for new phyla 10.1111/j.1462-2920.2008.01699.x
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Globins Synthesize the Second Messenger Bis-(3′-5′)-Cyclic Diguanosine Monophosphate in Bacteria 10.1016/j.jmb.2009.03.015
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Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae 10.1093/nar/gkh555
Identification of Sensory and Signal-Transducing Domains in Two-Component Signaling Systems 10.1016/S0076-6879(06)22003-2
In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium 10.1089/153623104773547471
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Linear chromosomes in bacteria: No straight edge advantage? 10.1111/j.1462-2920.2007.01328.x
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Microbial genomics as pursuit of happiness 10.1111/j.1751-7915.2009.00090_6.x
Microbial systems biology: Bottom up and top down 10.1111/j.1574-6976.2008.00147.x
More cool news from marine bacteria 10.1111/j.1462-2920.2005.00951.x
Mycobacterial genomes for all tastes: From BCG to biodegradation of naphtalene and pyrene 10.1111/j.1462-2920.2007.01275.x
New metrics for comparative genomics 10.1016/j.copbio.2006.08.007
New structural and functional contexts of the Dx[DN]xDG linear motif: Insights into evolution of Calcium-binding proteins 10.1371/journal.pone.0021507
Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution 10.1186/1745-6150-5-31
Novel domains of the prokaryotic two-component signal transduction systems 10.1016/S0378-1097(01)00326-3
Nucleic acids research annual database issue and the NAR online molecular biology database collection in 2009 10.1093/nar/gkn942
OMICS-related research in Latin America 10.1089/omi.2005.9.129
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On the abundance of zinc in the evolutionarily old protein domains 10.1073/pnas.1008745107
On the bottom of the deep blue sea 10.1111/j.1462-2920.2005.00812.x
On the origin of life in the Zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on earth 10.1186/1745-6150-4-27
Open Questions on the Origin of Life at Anoxic Geothermal Fields 10.1007/s11084-012-9315-0
Origin of first cells at terrestrial, anoxic geothermal fields 10.1073/pnas.1117774109
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Physico-chemical and evolutionary constraints for the formation and selection of first biopolymers: Towards the consensus paradigm of the abiogenic origin of life 10.1002/cbdv.200790167
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Planctomycetes and eukaryotes: A case of analogy not homology 10.1002/bies.201100045
Prokaryotic genomes: The emerging paradigm of genome-based microbiology 10.1016/S0959-437X(97)80037-8
Protecting sausages with bacteria instead of salt 10.1111/j.1462-2920.2005.00985.x
Purification, cloning, and expression of an apyrase from the bed bug Cimex lectularius: A new type of nucleotide-binding enzyme 10.1074/jbc.273.46.30583
Salt in the wound: A possible role of Na+ gradient in chlamydial infection 10.1159/000082075
Sampling of microbial diversity by complete genomes 10.1111/j.1462-2920.2006.01089.x
Searching for drug targets in microbial genomes 10.1016/S0958-1669(99)00035-X
Sentra: A database of signal transduction proteins for comparative genome analysis 10.1093/nar/gkl949
Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution 10.1093/bioinformatics/btn314
Sequence conservation in the chagasin family suggests a common trend in cysteine proteinase binding by unrelated protein inhibitors 10.1110/ps.0207202
Single domain response regulators: molecular switches with emerging roles in cell organization and dynamics 10.1016/j.mib.2009.01.010
Social bacteria and asocial eukaryotes 10.1111/j.1462-2920.2007.01552.x
Sodium ion cycle in bacterial pathogens: Evidence from cross-genome comparisons 10.1128/MMBR.65.3.353-370.2001
Some bacteria degrade explosives, others prefer boiling methanol 10.1111/j.1462-2920.2007.01480.x
Sorting out the mix in microbial genomics 10.1111/j.1462-2920.2008.01811.x
Structural classification of bacterial response regulators: Diversity of output domains and domain combinations 10.1128/JB.01887-05
Structural diversity of calcium-binding proteins in bacteria: Single-handed EF-hands? 10.1016/S0966-842X(03)00153-7
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases 10.1016/j.jmb.2010.07.050
Subspecies-specific haemagglutination patterns of fimbriated Bacillus thuringiensis spores 10.1016/0378-1097(91)90636-O
Systems biology: sprint or marathon? 10.1016/j.copbio.2006.08.008
Telling Bacteria: Do Not LytTR 10.1016/j.str.2008.04.003
The 2010 Nucleic Acids Research Database Issue and online Database Collection: A community of data resources 10.1093/nar/gkp1077
The 2011 Nucleic acids research database issue and the online molecular biology database collection 10.1093/nar/gkq1243
The 2012 Nucleic Acids Research database issue and the online molecular biology database collection 10.1093/nar/gkr1196
The DxDxDG motif for calcium binding: Multiple structural contexts and implications for evolution 10.1016/j.jmb.2004.08.077
The Molecular Biology Database Collection: 2005 update 10.1093/nar/gki139
The PA14 domain, a conserved all-β domain in bacterial toxins, enzymes, adhesins and signaling molecules 10.1016/j.tibs.2004.05.002
The Role of Energy in the Emergence of Biology from Chemistry 10.1007/s11084-012-9308-z
The bugs that came in from the cold 10.1111/j.1462-2920.2004.00707.x
The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold 10.1016/S0968-0004(98)01189-X
The crystal structure of a complex of Campylobacter jejuni dUTPase with substrate analogue sheds light on the mechanism and suggests the "basic module" for dimeric d(C/U)TPases 10.1016/j.jmb.2004.07.050
The cyanobacterial genome core and the origin of photosynthesis 10.1073/pnas.0605709103
The dawn of synthetic genomics 10.1111/j.1462-2920.2008.01581.x
The fuzzy border between a cell and an organelle 10.1111/j.1462-2920.2006.01178.x
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: The role of genome evolution in cold adaptation 10.1038/ismej.2009.45
The minimal genome keeps growing 10.1111/j.1462-2920.2006.01021.x
The molecular biology database collection: 2007 update 10.1093/nar/gkl1008
The molecular biology database collection: 2008 update 10.1093/nar/gkm1037
The past and present of sodium energetics: May the sodium-motive force be with you 10.1016/j.bbabio.2008.04.028
The quest for biofuels fuels genome sequencing 10.1111/j.1462-2920.2008.01754.x
The secret of being cool 10.1111/j.1462-2920.2005.00923.x
The synthetase domains of cobalamin biosynthesis amidotransferases CobB and CobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase 10.1002/1097-0134(20001101)41:2<238::AID-PROT80>3.0.CO;2-L
The vibrio that sheds light 10.1111/j.1462-2920.2005.00839.x
To finish or not to finish? 10.1111/j.1462-2920.2005.00879.x
Toward community standards in the quest for orthologs 10.1093/bioinformatics/bts050
Towards BioDBcore: A community-defined information specification for biological databases 10.1093/nar/gkq1173
Using archaeal genomics to fight global warming and clostridia to fight cancer 10.1111/j.1462-2920.2006.01223.x
Using metabolic pathway databases for functional annotation 10.1016/S0168-9525(98)01523-6
Using the COG database to improve gene recognition in complete genomes 10.1023/A:1004031323748
Who's your neighbor? New computational approaches for functional genomics 10.1038/76443
ΔμH+ is required for flagellar growth in Escherichia coli 10.1016/0014-5793(82)80125-7
Two forms of phosphomannomutase in gammaproteobacteria: The overlooked membrane-bound form of AlgC is required for twitching motility of Lysobacter enzymogenes 10.1111/1462-2920.14615
A bacterial coat that is not pure cotton: Biofilms formed by E. coli and Salmonella contain a new form of modified cellulose 10.1126/science.aar5253
Effect of ultrasound on adhesiveness of Escherichia coli 10.1007/BF00834193
Microbial genome analysis: The COG approach 10.1093/bib/bbx117
Structural and Functional Characterization of the BcsG Subunit of the Cellulose Synthase in Salmonella typhimurium 10.1016/j.jmb.2018.07.008
Class A GPCRs use the membrane potential to increase their sensitivity and selectivity 10.1016/j.bbamem.2019.183051
Structural Conservation and Diversity of PilZ-Related Domains 10.1128/JB.00664-19
Cyclic di-AMP, a second messenger of primary importance: tertiary structures and binding mechanisms 10.1093/nar/gkaa112
Complete Genome Sequences of the Human Pathogen Paenibacillus thiaminolyticus Mbale and Type Strain P. thiaminolyticus NRRL B-4156 10.1128/MRA.00181-20
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology. 10.1038/s41564-019-0588-1
Cyclic di-GMP in Streptomycetes: A New Conformation, New Binding Mode, New Receptor, and a New Mechanism to Control Cell Development. 10.1016/j.molcel.2020.01.018
Towards BioDBcore: A community-defined information specification for biological databases 10.1093/database/baq027
Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism 10.1101/420133
A decade of research on the second messenger c-di-AMP 10.1093/femsre/fuaa019
The Bacterial and Viral Complexity of Postinfectious Hydrocephalus in Uganda 10.1101/2020.08.03.20167544
Paenibacillus infection with frequent viral coinfection contributes to postinfectious hydrocephalus in Ugandan infants 10.1126/scitranslmed.aba0565
Noncanonical Cyclic di-GMP Binding Modes 10.1007/978-3-030-33308-9_8
COG database update: focus on microbial diversity, model organisms, and widespread pathogens 10.1093/nar/gkaa1018
Comparative analysis of active sites in P-loop nucleoside triphosphatases suggests an ancestral activation mechanism 10.1101/439992
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. 10.1093/nar/gkx021
Ways to control harmful biofilms: prevention, inhibition, and eradication 10.1080/1040841X.2020.1842325
Nonessential Ribosomal Proteins in Bacteria and Archaea Identified Using Clusters of Orthologous Genes 10.1128/JB.00058-21
Comparative Genome Analysis http://dx.doi.org/10.1002/0471223921.ch15
Evolutionary origins of membrane proteins http://dx.doi.org/10.1007/978-3-7091-0045-5_1
Life is not defined just in base pairs http://dx.doi.org/10.1111/j.1462-2920.2005.00774.x
Linear chromosomes in bacteria: no straight edge advantage? http://dx.doi.org/10.1111/j.1462-2920.2007.01328.x
Looking at big brothers for clues http://dx.doi.org/10.1111/j.1462-2920.2004.00682.x
Microbial genomics as pursuit of happiness http://dx.doi.org/10.1111/j.1751-7915.2009.00090_6.x
Protecting sausages with bacteria instead of salt http://dx.doi.org/10.1111/j.1462-2920.2005.00985.x
Protein Domains Involved in Intracellular Signal Transduction http://dx.doi.org/10.1002/9783527629237.ch15
Social bacteria and asocial eukaryotes http://dx.doi.org/10.1111/j.1462-2920.2007.01552.x
Telling Bacteria: Do Not LytTR http://dx.doi.org/10.1016/j.str.2008.04.003
The minimal genome keeps growing http://dx.doi.org/10.1111/j.1462-2920.2006.01021.x
Mycobacterial CarD defines a novel mechanism of response to starvation stress 10.1101/2021.04.15.439805
Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae 10.1128/MRA.00559-21
damien devos
devos damien
ORCID: 0000-0002-9453-4753
Practical limits of function prediction 10.1002/1097-0134(20001001)41:1<98::AID-PROT120>3.0.CO;2-S
Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile 10.1016/j.cell.2011.06.039
Transitional forms between the three domains of life and evolutionary implications 10.1098/rspb.2011.1581
Subtle Changes in Motif Positioning Cause Tissue-Specific Effects on Robustness of an Enhancer's Activity 10.1371/journal.pgen.1004060
BRICHOS: A conserved domain in proteins associated with dementia, respiratory distress and cancer 10.1016/S0968-0004(02)02134-5
Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor 10.1074/mcp.M900038-MCP200
The compartmentalized bacteria of the planctomycetes-verrucomicrobia- chlamydiae superphylum have membrane coat-like proteins 10.1371/journal.pbio.1000281
Proteome organization in a genome-reduced bacterium 10.1126/science.1176343
Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner 10.1186/s12859-015-0866-8
A bacterial tubulovesicular network 10.1242/jcs.137596
Evolution of the nucleus 10.1016/j.ceb.2014.01.004
A more complete, complexed and structured interactome 10.1016/j.sbi.2007.05.011
Structural aspects of MC proteins of PVC superphylum members 10.1007/978-1-62703-502-6_3
Mind the PVCs 10.1111/1462-2920.12349
POTRA: A conserved domain in the FtsQ family and a class of β-barrel outer membrane proteins 10.1016/j.tibs.2003.08.003
Components of coated vesicles and nuclear pore complexes share a common molecular architecture 10.1371/journal.pbio.0020380
A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae 10.1074/mcp.M110.006478
RAWUL: A new ubiquitin-like domain in PRC1 Ring finger proteins that unveils putative plant and worm PRC1 orthologs 10.1186/1471-2164-9-308
Endocytosis-like protein uptake in the bacterium Gemmata obscuriglobus 10.1073/pnas.1001085107
Ten Simple Rules for Organizing an Unconference 10.1371/journal.pcbi.1003905
À la carte transcriptional regulators: Unlocking responses of the prokaryotic enhancer-binding protein XylR to non-natural effectors 10.1046/j.1365-2958.2001.02633.x
A composite score for predicting errors in protein structure models 10.1110/ps.062095806
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation 10.1038/ng.3497
Analysis of the yeast nucleoporin Nup188 reveals a conserved S-like structure with similarity to karyopherins 10.1016/j.jsb.2011.11.008
Conservation of helical bundle structure between the exocyst subunits 10.1371/journal.pone.0004443
Subunit architecture of intact protein complexes from mass spectrometry and homology modeling 10.1021/ar700218q
Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: A structural model of its N-terminal domain 10.1046/j.1462-2920.2002.00265.x
The three-dimensional molecular structure of the desmosomal plaque 10.1073/pnas.1019469108
Re-interpretation of the evidence for the PVC cell plan supports a Gram-negative origin 10.1007/s10482-013-0087-y
Gemmata obscuriglobus 10.1016/j.cub.2013.07.013
Harry Potter and the structural biologist's (Key)stone 10.1186/gb-2006-7-12-333
Simple fold composition and modular architecture of the nuclear pore complex 10.1073/pnas.0506345103
Evaluation of annotation strategies using an entire genome sequence 10.1093/bioinformatics/btg077
The 1st EMBO workshop on PVC bacteria - Planctomycetes-verrucomicrobia- chlamydiae superphylum: Exceptions to the bacterial definition? 10.1007/s10482-013-0026-y
Intermediate steps 10.1126/science.1196720
Regarding the presence of membrane coat proteins in bacteria: Confusion? What confusion? 10.1002/bies.201100147
Solution structure of the hypothetical protein Mth677 from Methanobacterium thermoautotrophicum: A novel α+β fold 10.1110/ps.04620504
Prediction of human protein function from post-translational modifications and localization features 10.1016/S0022-2836(02)00379-0
Determining the architectures of macromolecular assemblies 10.1038/nature06404
PVC bacteria: Variation of, but not exception to, the Gram-negative cell plan 10.1016/j.tim.2013.10.008
The single tryptophan of the PsbQ protein of photosystem II is at the end of a 4-α-helical bundle domain 10.1046/j.1432-1033.2003.03774.x
The molecular architecture of the nuclear pore complex 10.1038/nature06405
Evaluating the evolutionary origins of unexpected character distributions within the bacterial Planctomycetes-Verrucomicrobia-Chlamydiae superphylum 10.3389/fmicb.2012.00401
Conformational flexibility of RNA polymerase III during transcriptional elongation 10.1038/emboj.2010.266
Protease Accessibility Laddering: A Proteomic Tool for Probing Protein Structure 10.1016/j.str.2006.02.006
Three-Dimensional Reconstruction of Bacteria with a Complex Endomembrane System 10.1371/journal.pbio.1001565
Intrinsic errors in genome annotation 10.1016/S0168-9525(01)02348-4
Development of genetic tools for the manipulation of the planctomycetes 10.3389/fmicb.2016.00914
The changing view of eukaryogenesis – fossils, cells, lineages and how they all come together 10.1242/jcs.178566
4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data 10.1371/journal.pcbi.1006030
Introduction to papers from the third meeting on the Planctomycetes-Verrucomicrobia-Chlamydiae bacteria: new model organisms in the omics era 10.1007/s10482-018-1089-6
PVCbase: an integrated web resource for the PVC bacterial proteomes 10.1093/database/bay042
Planctomycetes attached to algal surfaces: Insight into their genomes 10.1016/j.ygeno.2017.10.007
The Paradigms They Are a-Changin’: past, present and future of PVC bacteria research 10.1007/s10482-017-0962-z
Editorial: Planctomycetes-verrucomicrobia-chlamydiae bacterial superphylum: New model organisms for evolutionary cell biology 10.3389/fmicb.2017.01458
Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements 10.1186/s13059-017-1225-z
Determining the bacterial cell biology of Planctomycetes 10.1038/ncomms14853
The In Vivo Architecture of the Exocyst Provides Structural Basis for Exocytosis 10.1016/j.cell.2017.01.004
Evolutionary cell biology of division mode in the bacterial Planctomycetes-verrucomicrobia- Chlamydiae superphylum 10.3389/fmicb.2016.01964
A multi-functional tubulovesicular network as the ancestral eukaryotic endomembrane system 10.3390/biology4020264
Nuclear Pore Complex Components in the Malaria Parasite Plasmodium berghei 10.1038/s41598-018-29590-5
The nucleoporin MEL-28 promotes RanGTP-dependent γ-tubulin recruitment and microtubule nucleation in mitotic spindle formation 10.1038/ncomms4270
ICBdocker: a Docker image for proteome annotation and visualization 10.1093/bioinformatics/bty493
Essentiality of sterol synthesis genes in the planctomycete bacterium Gemmata obscuriglobus 10.1038/s41467-019-10983-7
Non-essentiality of canonical cell division genes in the planctomycete Planctopirus limnophila 10.1038/s41598-019-56978-8
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology. 10.1038/s41564-019-0588-1
Hansenula polymorpha Pex37 is a peroxisomal membrane protein required for organelle fission and segregation. 10.1111/febs.15123
Live-Cell Structural Biology to Solve Biological Mechanisms: The Case of the Exocyst. 10.1016/j.str.2019.04.010
Commentary: Manifold Routes to a Nucleus. 10.3389/fmicb.2019.01198
Transcriptome, proteome and draft genome of Euglena gracilis. 10.1186/s12915-019-0626-8
Origin and Evolution of Polycyclic Triterpene Synthesis 10.1093/molbev/msaa054
Peroxisome retention involves Inp1-dependent peroxisome–plasma membrane contact sites in yeast 10.1083/jcb.201906023
Pex24 and Pex32 are required to tether peroxisomes to the ER for organelle biogenesis, positioning and segregation 10.1242/jcs.246983
Complementary Tendencies in the Use of Regulatory Elements (Transcription Factors, Sigma Factors, and Riboswitches) in Bacteria and Archaea 10.1128/JB.00413-20
Functional diversity of isoprenoidal lipids in Methylobacterium extorquens PA1 10.1101/2020.12.21.423902
Comparative genomics of peroxisome biogenesis proteins: making sense of the PEX mess 10.1101/2020.12.16.423121
Reconciling Asgardarchaeota Phylogenetic Proximity to Eukaryotes and Planctomycetes Cellular Features in the Evolution of Life 10.1093/molbev/msab186
Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System 10.1093/gbe/evab125
Daniela Pinto
Pinto Daniela
ORCID: 0000-0002-2405-8755
(Actino)Bacterial "intelligence": using comparative genomics to unravel the information processing capacities of microbes 10.1007/s00294-016-0569-3
Environmental Sensing in Actinobacteria: a Comprehensive Survey on the Signaling Capacity of This Phylum. 10.1128/JB.00176-15
Thirty years of viable but nonculturable state research: Unsolved molecular mechanisms 10.3109/1040841X.2013.794127
Characterization of two resuscitation promoting factors of Listeria monocytogenes 10.1099/mic.0.067850-0
Hospital-Adapted Clonal Complex 17 Enterococcus faecium Found among Sand Enterococcal Isolates 10.4236/jep.2012.31010
Large-Scale Screening of a Targeted Enterococcus faecalis Mutant Library Identifies Envelope Fitness Factors 10.1371/journal.pone.0029023
Resuscitation of Escherichia coli VBNC cells depends on a variety of environmental or chemical stimuli 10.1111/j.1365-2672.2011.05016.x
The three-component system EsrISR regulates a cell envelope stress response in Corynebacterium glutamicum 10.1111/mmi.13839
The ECF classification: a phylogenetic reflection of the regulatory diversity in the extracytoplasmic function 𝛔 factor protein family 10.1002/9781119004813.ch7
Engineering orthogonal synthetic timer circuits based on extracytoplasmic function σ factors. 10.1093/nar/gky614
Characterization of the widely distributed novel ECF42 group of extracytoplasmic function σ factors in Streptomyces venezuelae 10.1128/JB.00437-18
Extracytoplasmic function σ factors can be implemented as robust heterologous genetic switches in Bacillus subtilis https://doi.org/10.1016/j.isci.2019.03.001
Defining the regulon of genes controlled by σE, a key regulator of the cell envelope stress response in Streptomyces coelicolor 10.1111/mmi.14250
ECF σ factors with regulatory extensions: The one‐component systems of the σ universe 10.1111/mmi.14323
Cultivation and functional characterization of 79 Planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Evolution of the extracytoplasmic function σ factor protein family 10.1093/nargab/lqz026
Marnix H. Medema
Medema Marnix H.
ORCID: 0000-0002-2191-2821
Bioinformatics Approaches and Software for Detection of Secondary Metabolic Gene Clusters 10.1007/978-1-62703-122-6_2
Synthetic Biology in Streptomyces Bacteria 10.1016/b978-0-12-385075-1.00021-4
Computational approaches to natural product discovery 10.1038/nchembio.1884
Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms 10.1038/nrmicro2478
A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis 10.1371/journal.pcbi.1004016
Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism 10.1016/j.febslet.2011.06.014
MultiMetEval: Comparative and Multi-Objective Analysis of Genome-Scale Metabolic Models 10.1371/journal.pone.0051511
The future of industrial antibiotic production: From random mutagenesis to synthetic biology 10.4161/bbug.2.4.16114
Metabolomics methods for the synthetic biology of secondary metabolism 10.1016/j.febslet.2012.02.008
Computational tools for the synthetic design of biochemical pathways 10.1038/nrmicro2717
A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis 10.1186/1471-2164-11-299
Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus 10.1111/j.1751-7915.2010.00226.x
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea 10.1111/j.1462-2920.2008.01724.x
Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters 10.1016/j.cell.2014.06.034
Pep2Path: Automated Mass Spectrometry-Guided Genome Mining of Peptidic Natural Products 10.1371/journal.pcbi.1003822
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters 10.1093/nar/gkv437
Design-based re-engineering of biosynthetic gene clusters: plug-and-play in practice 10.1016/j.copbio.2013.03.006
Functional Exchangeability of Oxidase and Dehydrogenase Reactions in the Biosynthesis of Hydroxyphenylglycine, a Nonribosomal Peptide Building Block 10.1021/sb500368w
antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers 10.1093/nar/gkt449
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences 10.1093/nar/gkr466
The Sequence of a 1.8-Mb Bacterial Linear Plasmid Reveals a Rich Evolutionary Reservoir of Secondary Metabolic Pathways 10.1093/gbe/evq013
MS/MS networking guided analysis of molecule and gene cluster families 10.1073/pnas.1303471110
Detecting Sequence Homology at the Gene Cluster Level with MultiGeneBlast 10.1093/molbev/mst025
Complete Genome Sequence of the Frog Pathogen Mycobacterium ulcerans Ecovar Liflandii 10.1128/jb.02132-12
NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity 10.1093/nar/gkr323
Mechanisms and Evolution of Control Logic in Prokaryotic Transcriptional Regulation 10.1128/mmbr.00037-08
Genomic mutational analysis of the impact of the classical strain improvement program on β-lactam producing Penicillium chrysogenum. 10.1186/s12864-015-2154-4
Leucanicidin and endophenasides result from methyl-rhamnosylation by the same tailoring enzymes in Kitasatospora sp. MBT66 10.1021/acschembio.5b00801
Computational strategies for genome-based natural product discovery and engineering in fungi 10.1016/j.fgb.2016.01.006
The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters 10.1093/nar/gkw960
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides 10.1038/nmicrobiol.2016.197
Editorial: Synthetic biology and bioinformatics 10.1039/c6np90031c
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters 10.1093/nar/gkx305
Genome-based exploration of the specialized metabolic capacities of the genus Rhodococcus 10.1186/s12864-017-3966-1
Mining prokaryotes for antimicrobial compounds: from diversity to function 10.1093/femsre/fux014
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters 10.1093/bib/bbx146
Standardization for natural product synthetic biology 10.1039/c6np00030d
Computational genomic identification and functional reconstitution of plant natural product biosynthetic pathways 10.1039/c6np00035e
Draft Genome Sequence of a Porcine Commensal, Rothia nasimurium , Encoding a Nonribosomal Peptide Synthetase Predicted To Produce the Ionophore Antibiotic Valinomycin 10.1128/genomea.00453-17
SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria 10.1093/bioinformatics/btx400
Collaborating with Undergraduates To Contribute to Biochemistry Community Resources 10.1021/acs.biochem.7b00872
Road MAPs to engineer host microbiomes. 10.1016/j.mib.2017.11.023
Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens. 10.1111/1462-2920.13927
Unearthing a sesterterpene biosynthetic repertoire in the Brassicaceae through genome mining reveals convergent evolution. 10.1073/pnas.1705567114
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification. 10.1093/nar/gkx319
Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products. 10.1016/j.fgb.2016.01.012
Exploration and exploitation of the environment for novel specialized metabolites. 10.1016/j.copbio.2018.01.017
Computational Genomics of Specialized Metabolism: from Natural Product Discovery to Microbiome Ecology 10.1128/mSystems.00182-17
Analysis of the Pseudouridimycin Biosynthetic Pathway Provides Insights into the Formation of C-nucleoside Antibiotics. 10.1016/j.chembiol.2018.02.008
HEx: A heterologous expression platform for the discovery of fungal natural products. 10.1126/sciadv.aar5459
luxR Homolog-Linked Biosynthetic Gene Clusters in Proteobacteria. 10.1128/msystems.00208-17
A Pressure Test to Make 10 Molecules in 90 Days: External Evaluation of Methods to Engineer Biology. 10.1021/jacs.7b13292
Evolution and Diversity of Biosynthetic Gene Clusters in Fusarium. 10.3389/fmicb.2018.01158
Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils. 10.1038/s41396-018-0186-x
Genomic Identification and Analysis of Specialized Metabolite Biosynthetic Gene Clusters in Plants Using PlantiSMASH. 10.1007/978-1-4939-7874-8_15
A standardized workflow for submitting data to the Minimum Information about a Biosynthetic Gene cluster (MIBiG) repository: prospects for research-based educational experiences 10.1186/s40793-018-0318-y
The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters 10.1093/nar/gky1060
Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1101/463620
Mining bacterial genomes to reveal secret synergy 10.1074/jbc.H118.006669
Computational identification of co-evolving multi-gene modules in microbial biosynthetic gene clusters 10.1038/s42003-019-0333-6
Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1111/tpj.14292
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters 10.1186/s13104-019-4222-3
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline 10.1093/nar/gkz310
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools 10.1101/654459
BiosyntheticSPAdes: Reconstructing Biosynthetic Gene Clusters From Assembly Graphs 10.1101/gr.243477.118
Genome Mining Approaches to Bacterial Natural Product Discovery 10.1016/b978-0-12-409547-2.14627-x
Computer-aided re-engineering of nonribosomal peptide and polyketide biosynthetic assembly lines 10.1039/C9NP00021F
PlantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters 10.1101/083535
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools 10.3390/metabo9070144
Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L. 10.3389/fpls.2019.00846
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome 10.1126/science.aaw9285
MIBiG 2.0: a repository for biosynthetic gene clusters of known function 10.1093/nar/gkz882
A metabolic pathway for bile acid dehydroxylation by the gut microbiome 10.1101/758557
Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines 10.1101/669291
The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery 10.1021/acscentsci.9b00806
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Global analysis of adenylate-forming enzymes reveals β-lactone biosynthesis pathway in pathogenic Nocardia 10.1101/856955
Drivers of metabolic diversification: how dynamic genomic neighbourhoods generate new biosynthetic pathways in the Brassicaceae 10.1111/nph.16338
Microbial and volatile profiling of soils suppressive to Fusarium culmorum of wheat 10.1098/rspb.2019.2527
Computational genomic discovery of diverse gene clusters harboring Fe-S flavoenzymes in anaerobic gut microbiota 10.1101/2020.03.06.976126
RRE-Finder: A Genome-Mining Tool for Class-Independent RiPP Discovery 10.1101/2020.03.14.992123
Linking genomics and metabolomics to chart specialized metabolic diversity 10.1039/D0CS00162G
Computational genomic discovery of diverse gene clusters harbouring Fe-S flavoenzymes in anaerobic gut microbiota 10.1099/mgen.0.000373
ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining 10.1093/nar/gkaa374
Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products 10.1101/2020.05.19.104752
Ecology and genomics of Actinobacteria: new concepts for natural product discovery 10.1038/s41579-020-0379-y
The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-0993-2
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters 10.1101/2020.08.17.240838
Global analysis of adenylate-forming enzymes reveals β-lactone biosynthesis pathway in pathogenic Nocardia 10.1074/jbc.RA120.013528
Microbial natural product databases: moving forward in the multi-omics era 10.1039/D0NP00053A
Author Correction: The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-01228-1
RRE-Finder: a Genome-Mining Tool for Class-Independent RiPP Discovery 10.1128/mSystems.00267-20
Author Correction: The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-01271-y
BiG-FAM: the biosynthetic gene cluster families database 10.1093/nar/gkaa812
Coevolution-based prediction of protein–protein interactions in polyketide biosynthetic assembly lines 10.1093/bioinformatics/btaa595
The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes 10.1093/nar/gkaa978
Pan-genome analysis and ancestral state reconstruction of class halobacteria: probability of a new super-order 10.1038/s41598-020-77723-6
BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes 10.1101/2020.12.14.422671
Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides 10.1371/journal.pbio.3001026
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters 10.1093/gigascience/giaa154
The year 2020 in natural product bioinformatics: an overview of the latest tools and databases 10.1039/D0NP00090F
Do size and shape matter? Exploring the interactions and the metabolome of the soil isolate Hylemonella gracilis 10.1101/2021.02.11.430889
A systematic analysis of metabolic pathways in the human gut microbiota 10.1101/2021.02.25.432841
Omics-based strategies to discover novel classes of RiPP natural products 10.1016/j.copbio.2020.12.008
Evolution of combinatorial diversity in trans-acyltransferase polyketide synthase assembly lines across bacteria 10.1038/s41467-021-21163-x
The Surfactin-Like Lipopeptides From Bacillus spp.: Natural Biodiversity and Synthetic Biology for a Broader Application Range 10.3389/fbioe.2021.623701
Mining metagenomes for natural product biosynthetic gene clusters: unlocking new potential with ultrafast techniques 10.1101/2021.01.20.427441
Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes 10.3389/fmicb.2020.574053
A mammalian commensal of the oropharyngeal cavity produces antibiotic and antiviral valinomycin in vivo 10.21203/rs.3.rs-126949/v1
A biaryl-linked tripeptide from Planomonospora reveals a widespread class of minimal RiPP gene clusters 10.1016/j.chembiol.2020.11.009
cblaster: a remote search tool for rapid identification and visualisation of homologous gene clusters 10.1101/2020.11.08.370601
antiSMASH 6.0: improving cluster detection and comparison capabilities 10.1093/nar/gkab335
The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota 10.1093/nar/gkab353
Mining genomes to illuminate the specialized chemistry of life 10.1038/s41576-021-00363-7
Dominant drivers of the human plasma metabolome 10.21203/rs.3.rs-688716/v1
A global survey of specialized metabolic diversity encoded in bacterial genomes 10.1101/2021.08.11.455920
cblaster: a remote search tool for rapid identification and visualization of homologous gene clusters 10.1093/bioadv/vbab016
Sandra Wiegand
Wiegand Sandra
ORCID: 0000-0001-5403-4896
Fermentation stage-dependent adaptations of Bacillus licheniformis during enzyme production. 10.1186/1475-2859-12-120
RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation. 10.1186/1471-2164-14-667
TraV: a genome context sensitive transcriptome browser. 10.1371/journal.pone.0093677
Complete Genome Sequence of Geobacillus sp. Strain GHH01, a Thermophilic Lipase-Secreting Bacterium. 10.1128/genomeA.00092-13
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters! 10.1371/journal.pone.0169662
Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea. 10.3389/fmicb.2016.02079
Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. 10.3389/fmicb.2017.00202
Unravelling the Identity, Metabolic Potential and Global Biogeography of the Atmospheric Methane-Oxidizing Upland Soil Cluster α. 10.1111/1462-2920.14036
Reevaluation of the Complete Genome Sequence of Magnetospirillum gryphiswaldense MSR-1 with Single-Molecule Real-Time Sequencing Data 10.1128/genomeA.00309-18
On the maverick Planctomycetes 10.1093/femsre/fuy029
The novel shapeshifting bacterial phylum Saltatorellota 10.1101/817700
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Non-essentiality of canonical cell division genes in the planctomycete Planctopirus limnophila 10.1038/s41598-019-56978-8
The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-0993-2
Author Correction: The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-01228-1
Author Correction: The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-01271-y
Nicolai Kallscheuer
Kallscheuer Nicolai
ORCID: 0000-0003-4925-6923
Construction of a Corynebacterium glutamicum platform strain for the production of stilbenes and (2S)-flavanones 10.1016/j.ymben.2016.06.003
Single-domain peptidyl-prolyl cis/trans isomerase FkpA from Corynebacterium glutamicum improves the biomass yield at increased growth temperatures 10.1128/AEM.02113-15
Identification of the phd gene cluster responsible for phenylpropanoid utilization in Corynebacterium glutamicum 10.1007/s00253-015-7165-1
Improved production of adipate with Escherichia coli by reversal of β-oxidation 10.1007/s00253-016-8033-3
A novel synthetic pathway enables microbial production of polyphenols independent from the endogenous aromatic amino acid metabolism 10.1021/acssynbio.6b00291
Functional expression of plant-derived O-methyltransferase, flavanone 3-hydroxylase, and flavonol synthase in Corynebacterium glutamicum for production of pterostilbene, kaempferol, and quercetin 10.1016/j.jbiotec.2017.01.006
Produktion pflanzlicher Polyphenole mit Corynebacterium glutamicum 10.1007/s12268-017-0804-6
Reversal of β-oxidative pathways for the microbial production of chemicals and polymer building blocks 10.1016/j.ymben.2017.05.004
BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits 10.1007/s11101-017-9532-2
Impact of the cultivation strategy on resveratrol production from glucose in engineered Corynebacterium glutamicum 10.1016/j.jbiotec.2017.11.006
OptPipe - a pipeline for optimizing metabolic engineering targets 10.1186/s12918-017-0515-0
Construction of a Corynebacterium glutamicum Platform Strain for the Production of High-Value Plant Secondary Metabolites 10.1002/cite.201650133
Production of plant-derived polyphenols in microorganisms: current state and perspectives 10.1007/s00253-018-8747-5
Corynebacterium glutamicum as platform for the production of hydroxybenzoic acids 10.1186/s12934-018-0923-x
Corynebacterium glutamicum — eine Zellfabrik für pflanzliche Polyphenole 10.1007/s12268-018-0939-0
Production of plant metabolites with applications in the food industry using engineered microorganisms https://doi.org/10.1016/j.copbio.2018.07.008
Engineered Microorganisms for the Production of Food Additives Approved by the European Union—A Systematic Analysis 10.3389/fmicb.2018.01746
Identification and microbial production of the raspberry phenol salidroside that is active against Huntington's disease 10.1104/pp.18.01074
Modulation of the central carbon metabolism of Corynebacterium glutamicum improves malonyl-CoA availability and increases plant polyphenol synthesis 10.1002/bit.26939
Tailoring Corynebacterium glutamicum towards increased malonyl-CoA availability for efficient synthesis of the plant pentaketide noreugenin 10.1186/s12934-019-1117-x
Competence of Corynebacterium glutamicum as a host for the production of type I polyketides 10.1101/622399
Pink‐ and orange‐pigmented Planctomycetes produce saproxanthin‐type carotenoids including a rare C 45 carotenoid 10.1111/1758-2229.12796
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Microbial synthesis of the type I polyketide 6-methylsalicylate with Corynebacterium glutamicum 10.1007/s00253-019-10121-9
Alienimonas californiensis gen. nov. sp. nov., a novel Planctomycete isolated from the kelp forest in Monterey Bay 10.1007/s10482-019-01367-4
Alienimonas chondri sp. nov., a novel planctomycete isolated from the biofilm of the red alga Chondrus crispus 10.1016/j.syapm.2020.126083
Rubinisphaera italica sp. nov. isolated from a hydrothermal area in the Tyrrhenian Sea close to the volcanic island Panarea 10.1007/s10482-019-01329-w
Rhodopirellula heiligendammensis sp. nov., Rhodopirellula pilleata sp. nov., and Rhodopirellula solitaria sp. nov. isolated from natural or artificial marine surfaces in Northern Germany and California, USA, and emended description of the genus Rhodopirellula 10.1007/s10482-019-01366-5
Three novel Rubripirellula species isolated from plastic particles submerged in the Baltic Sea and the estuary of the river Warnow in northern Germany 10.1007/s10482-019-01368-3
Description of three bacterial strains belonging to the new genus Novipirellula gen. nov., reclassificiation of Rhodopirellula rosea and Rhodopirellula caenicola and readjustment of the genus threshold of the phylogenetic marker rpoB for Planctomycetaceae 10.1007/s10482-019-01374-5
Three marine strains constitute the novel genus and species Crateriforma conspicua in the phylum Planctomycetes 10.1007/s10482-019-01375-4
Description of the novel planctomycetal genus Bremerella, containing Bremerella volcania sp. nov., isolated from an active volcanic site, and reclassification of Blastopirellula cremea as Bremerella cremea comb. nov. 10.1007/s10482-019-01378-1
Blastopirellula retiformator sp. nov. isolated from the shallow-sea hydrothermal vent system close to Panarea Island 10.1007/s10482-019-01377-2
Aureliella helgolandensis gen. nov., sp. nov., a novel Planctomycete isolated from a jellyfish at the shore of the island Helgoland 10.1007/s10482-020-01403-8
Lignipirellula cremea gen. nov., sp. nov., a planctomycete isolated from wood particles in a brackish river estuary 10.1007/s10482-020-01407-4
Description of Polystyrenella longa gen. nov., sp. nov., isolated from polystyrene particles incubated in the Baltic Sea 10.1007/s10482-020-01406-5
Calycomorphotria hydatis gen. nov., sp. nov., a novel species in the family Planctomycetaceae with conspicuous subcellular structures 10.1007/s10482-020-01419-0
Tautonia plasticadhaerens sp. nov., a novel species in the family Isosphaeraceae isolated from an alga in a hydrothermal area of the Eolian Archipelago 10.1007/s10482-020-01424-3
The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-0993-2
Stieleria varia sp. nov., isolated from wood particles in the Baltic Sea, constitutes a novel species in the family Pirellulaceae within the phylum Planctomycetes 10.1007/s10482-020-01456-9
Author Correction: The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-01228-1
Author Correction: The planctomycete Stieleria maiorica Mal15T employs stieleriacines to alter the species composition in marine biofilms 10.1038/s42003-020-01271-y
Analysis of bacterial communities in a municipal duck pond during a phytoplankton bloom and isolation of Anatilimnocola aggregata gen. nov., sp. nov., Lacipirellula limnantheis sp. nov. and Urbifossiella limnaea gen. nov., sp. nov. belonging to the phylum Planctomycetes 10.1111/1462-2920.15341
Cultivation-Independent Analysis of the Bacterial Community Associated With the Calcareous Sponge Clathrina clathrus and Isolation of Poriferisphaera corsica Gen. Nov., Sp. Nov., Belonging to the Barely Studied Class Phycisphaerae in the Phylum Planctomycetes 10.3389/fmicb.2020.602250
Maioricimonas rarisocia gen. nov., sp. nov., a novel planctomycete isolated from marine sediments close to Mallorca Island 10.1007/s10482-020-01436-z
Thalassoglobus polymorphus sp. nov., a novel Planctomycete isolated close to a public beach of Mallorca Island 10.1007/s10482-020-01437-y
Caulifigura coniformis gen. nov., sp. nov., a novel member of the family Planctomycetaceae isolated from a red biofilm sampled in a hydrothermal area 10.1007/s10482-020-01439-w
Rosistilla oblonga gen. nov., sp. nov. and Rosistilla carotiformis sp. nov., isolated from biotic or abiotic surfaces in Northern Germany, Mallorca, Spain and California, USA 10.1007/s10482-020-01441-2
Three Planctomycetes isolated from biotic surfaces in the Mediterranean Sea and the Pacific Ocean constitute the novel species Symmachiella dynata gen. nov., sp. nov. and Symmachiella macrocystis sp. nov. 10.1007/s10482-020-01464-9
Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana 10.1007/s10482-020-01486-3
Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere 10.1007/s10482-020-01489-0
Metabolic and Process Engineering for Microbial Production of Protocatechuate from Xylose with Corynebacterium glutamicum 10.1101/2021.02.12.430943
Bremerella alba sp. nov., a novel planctomycete isolated from the surface of the macroalga Fucus spiralis 10.1016/j.syapm.2021.126189
Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov. 10.3390/microorganisms9071494
Metabolic and process engineering for microbial production of protocatechuate with Corynebacterium glutamicum 10.1002/bit.27909
Olga Lage
Lage Olga / Olga Maria Lage / O M Lage
ORCID: 0000-0002-3950-3970
Rhodopirellula lusitana sp. nov. and Rhodopirellula rubra sp. nov., isolated from the surface of macroalgae 10.1016/j.syapm.2013.11.004
RpoB gene as a novel molecular marker to infer phylogeny in Planctomycetales 10.1007/s10482-013-9980-7
Insights into the ultrastructural morphology of novel Planctomycetes 10.1007/s10482-013-9969-2
High ultraviolet C resistance of marine Planctomycetes 10.1007/s10482-013-0027-x
Chemoecological screening reveals high bioactivity in diverse culturable Portuguese marine cyanobacteria 10.3390/md11041316
Characterization of a planctomycete associated with the marine dinoflagellate Prorocentrum micans Her 10.1007/s10482-013-9991-4
Antimicrobial activity of heterotrophic bacterial communities from the marine sponge Erylus discophorus (Astrophorida, Geodiidae) 10.1371/journal.pone.0078992
Isolation and characterization of Planctomycetes from the sediments of a fish farm wastewater treatment tank 10.1007/s00203-012-0821-2
Determination of zeta potential in Planctomycetes and its application in heavy metals toxicity assessment 10.1007/s00203-012-0818-x
Bringing Planctomycetes into pure culture 10.3389/fmicb.2012.00405
Planctomycetes diversity associated with macroalgae 10.1111/j.1574-6941.2011.01168.x
Aquisphaera giovannonii gen. nov., sp. nov., a planctomycete isolated from a freshwater aquarium 10.1099/ijs.0.027474-0
Flow cytometric analysis of chronic and acute toxicity of copper(II) on the marine dinoflagellate Amphidinium carterae 10.1002/1097-0320(20010701)44:3<226::AID-CYTO1115>3.0.CO;2-9
Suitability of the pH buffers 3-[N-N-bis(hydroxyethyl)amino]-2- hydroxypropanesulfonic acid and N-2-hydroxyethylpiperazine-N'-2- ethanesulfonic acid for in vitro copper toxicity studies 10.1007/s002449900098
Electrochemical Evidence of Surfactant Activity of the Hepes pH Buffer Which May Have Implications on Trace Metal Availability to Culturesin Vitro 10.1006/abio.1996.0406
Some effects of copper on the dinoflagellates amphidirtium carterae and prorocentrum micans in batch culture 10.1080/09670269400650711
Roseimaritima ulvae gen. nov., sp. nov. and Rubripirellula obstinata gen. nov., sp. nov. two novel planctomycetes isolated from the epiphytic community of macroalgae 10.1016/j.syapm.2014.10.004
Assessment of planctomycetes cell viability after pollutants exposure 10.1007/s10482-014-0206-4
Planctomycetes and macroalgae, a striking association 10.3389/fmicb.2014.00267
Community composition of the Planctomycetes associated with different macroalgae 10.1111/1574-6941.12258
Toxicity effects of copper (ii) on the marine dinoflagellate amphidinium carterae: Influence of metal speciation 10.1080/09670269600651571
Electrophoretic analysis of polypeptides of Prorocentrum micans Ehrenberg exposed to toxic levels of copper 10.1016/0034-6667(94)90044-2
Feasibility of planctomycetes as a nutritional or supplementary food source forDaphniaspp 10.1051/limn/2016019
Mariniblastus fucicola gen. nov., sp. nov. a novel planctomycete associated with macroalgae 10.1099/ijsem.0.001760
Epiphytic Planctomycetes communities associated with three main groups of macroalgae 10.1093/femsec/fiw255
The antimicrobial activity of heterotrophic bacteria isolated from the marine sponge Erylus deficiens (Astrophorida, Geodiidae) 10.3389/fmicb.2015.00389
Planctomycetes as novel source of bioactive molecules 10.3389/fmicb.2016.01241
Planctomycetes attached to algal surfaces: Insight into their genomes 10.1016/j.ygeno.2017.10.007
Adequacy of planctomycetes as supplementary food source for Daphnia magna 10.1007/s10482-017-0997-1
Assessment of Rhodopirellula rubra as a supplementary and nutritional food source to the microcrustacean Daphnia magna 10.1007/s10482-019-01255-x
Antibiotic susceptibility of marine Planctomycetes 10.1007/s10482-019-01259-7
Pink‐ and orange‐pigmented Planctomycetes produce saproxanthin‐type carotenoids including a rare C 45 carotenoid 10.1111/1758-2229.12796
Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum bacteroidetes and the description of raineyaceae fam. nov 10.1099/ijsem.0.002556
Current screening methodologies in drug discovery for selected human diseases 10.3390/md16080279
Anticancer activity in planctomycetes 10.3389/fmars.2018.00499
Culturable bacteria from two Portuguese salterns: diversity and bioactive potential 10.1007/s10482-019-01356-7
Incidence and serotype characterisation ofStreptococcus agalactiaein a Portuguese hospital 10.1136/jclinpath-2017-204646
Epiphytic fungal community in Vitis vinifera of the Portuguese wine regions 10.1111/lam.12826
Bioactivities and extract dereplication of actinomycetales isolated from marine sponges 10.3389/fmicb.2019.00727
Introduction to papers from the third meeting on the Planctomycetes-Verrucomicrobia-Chlamydiae bacteria: new model organisms in the omics era 10.1007/s10482-018-1089-6
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology 10.1038/s41564-019-0588-1
Diketopiperazines and other bioactive compounds from bacterial symbionts of marine sponges 10.1007/s10482-020-01398-2
Alienimonas chondri sp. nov., a novel planctomycete isolated from the biofilm of the red alga Chondrus crispus 10.1016/j.syapm.2020.126083
Planctomycetes as a Vital Constituent of the Microbial Communities Inhabiting Different Layers of the Meromictic Lake Sælenvannet (Norway) 10.3390/microorganisms8081150
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Summary of the Sussex-Huawei locomotion-transportation recognition challenge
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Localized temporal variation of Earth's inner-core boundary from high-quality waveform doublets
Off-axis multi-wavelength dispersion controlling metalens for multi-color imaging
Impact of United States political sanctions on international collaborations and research in Iran