Maturation of the gut microbiome and risk of asthma in childhood
Jakob Stokholm Martin J. Blaser Jonathan Thorsen Morten Arendt Rasmussen Johannes Eichler Waage Rebecca K. Vinding Ann-Marie Malby Schoos Asja Kunøe Nadia R. Fink Bo Chawes Klaus Bønnelykke Asker Brejnrod Martin Steen Mortensen Waleed Abu Al-Soud Søren Johannes Sørensen Bisgaard H
Nature Communications, 2018
https://doi.org/10.1038/s41467-017-02573-2
Asker Brejnrod
Brejnrod Asker
ORCID: 0000-0002-1327-2051
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Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
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Morten Arendt Rasmussen
Rasmussen Morten Arendt
ORCID: 0000-0001-7431-5206
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Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
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Waleeed Abu Al-Soud
Abu Al-Soud Waleeed
ORCID: 0000-0002-1143-9233
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Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
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[397] DETERMINATION OF YMDD VARIANTS OF HEPATITIS B VIRUS POLYMERASE GENE BY DENATURING GRADIENT GEL ELECTROPHORESIS (DGGE) - A NOVEL APPROACH TO DRUG RESISTANCE MONITORING 10.1016/S0168-8278(07)61995-3
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Bo Chawes
Chawes Bo
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Elevated eosinophil protein X in urine from healthy neonates precedes development of atopy in the first 6 years of life. 10.1164/rccm.201101-0111oc
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Children with allergic and nonallergic rhinitis have a similar risk of asthma. 10.1016/j.jaci.2010.06.026
A novel method for assessing unchallenged levels of mediators in nasal epithelial lining fluid. 10.1016/j.jaci.2010.01.039
Elevated exhaled nitric oxide in high-risk neonates precedes transient early but not persistent wheeze. 10.1164/rccm.200909-1377oc
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Fish Oil Supplementation in Pregnancy Increases Gestational Age, Size for Gestational Age, and Birth Weight in Infants: A Randomized Controlled Trial 10.1093/jn/nxy204
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Neonatal Urine Metabolic Profiling and Development of Childhood Asthma 10.3390/metabo9090185
Environmental and Genetic Determinants of Serum 25(OH)-Vitamin D Levels during Pregnancy and Early Childhood 10.3390/children6100116
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma 10.1038/s41467-019-12989-7
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Assessment of adherence to asthma controllers in children and adolescents 10.1111/pai.13312
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Delayed Motor Milestones Achievement in Infancy Associates with Perturbations of Amino Acids and Lipid Metabolic Pathways 10.3390/metabo10090337
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Airway immune mediator levels during asthma‐like symptoms in young children and their possible role in response to azithromycin 10.1111/all.14651
FUT2–ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses 10.1038/s41467-020-19814-6
The Metabolomics of Childhood Atopic Diseases: A Comprehensive Pathway-Specific Review 10.3390/metabo10120511
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Maternal Metabolome in Pregnancy and Childhood Asthma or Recurrent Wheeze in the Vitamin D Antenatal Asthma Reduction Trial 10.3390/metabo11020065
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Innate IL‐23/Type 17 immune responses mediate the effect of the 17q21 locus on childhood asthma 10.1111/cea.13900
Jonathan Thorsen
Thorsen Jonathan
ORCID: 0000-0003-0200-0461
Neonates colonized with pathogenic bacteria in the airways have a low-grade systemic inflammation 10.1111/all.13461
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Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
Cadherin-related Family Member 3 Genetics and Rhinovirus C Respiratory Illnesses. 10.1164/rccm.201705-1021oc
Moderate to severe hidradenitis suppurativa patients do not have an altered bacterial composition in peripheral blood compared to healthy controls 10.1111/jdv.14538
Noninvasive sampling of mucosal lining fluid for the quantification of in vivo upper airway immune-mediator levels 10.3791/55800
The follicular skin microbiome in patients with hidradenitis suppurativa and healthy controls 10.1001/jamadermatol.2017.0904
Antibiotics in Pregnancy Increase Children's Risk of Otitis Media and Ventilation Tubes 10.1016/j.jpeds.2016.12.046
The developing hypopharyngeal microbiota in early life 10.1186/s40168-016-0215-9
Fish Oil-Derived Fatty Acids in Pregnancy and Wheeze and Asthma in Offspring. 10.1056/nejmoa1503734
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies 10.1186/s40168-016-0208-8
Cesarean section changes neonatal gut colonization 10.1016/j.jaci.2016.01.028
Genetic, Clinical, and Environmental Factors Associated With Persistent Atopic Dermatitis in Childhood 10.1001/jamadermatol.2018.4061
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children 10.1016/j.ebiom.2018.11.035
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Author Correction: Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis 10.1038/s41588-018-0197-6
Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis 10.1038/s41588-018-0157-1
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Determinants of neurodevelopment in early childhood - results from the Copenhagen Prospective Studies on Asthma in Childhood (COPSAC2010 ) Mother-Child Cohort 10.1111/apa.14753
Levels of Systemic Low-grade Inflammation in Pregnant Mothers and Their Offspring are Correlated 10.1038/s41598-019-39620-5
The microbiome of tunnels in hidradenitis suppurativa patients 10.1111/jdv.15597
A protocol for extraction of infective viromes suitable for metagenomics sequencing from low volume fecal samples 10.3390/v11070667
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma 10.1038/s41467-019-12989-7
Predictive Metagenomic Analysis Reveals a Role of Cutaneous Dysbiosis in the Development of Hidradenitis Suppurativa 10.1016/j.jid.2019.11.011
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial 10.1038/s41467-020-14308-x
Universal Dermal Microbiome in Human Skin 10.1128/mBio.02945-19
Effect of High-Dose vs Standard-Dose Vitamin D Supplementation in Pregnancy on Bone Mineralization in Offspring Until Age 6 Years 10.1001/jamapediatrics.2019.6083
Ecological succession in the vaginal microbiota during pregnancy and birth 10.1038/s41396-020-0686-3
Early life bacterial airway colonization, local immune mediator response and risk of otitis media 10.1099/jmm.0.001227
Clinically-suspected cast nephropathy 10.1002/ajh.25959
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age 10.1016/j.jaci.2020.07.005
Genetics of human gut microbiome composition 10.1101/2020.06.26.173724
Stability of the vaginal microbiota during pregnancy and its importance for early infant colonization 10.1101/2020.04.16.044255
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma 10.1126/scitranslmed.aax9929
Modeling transfer of vaginal microbiota from mother to infant in early life 10.7554/eLife.57051
High-Dose Vitamin D Supplementation in Pregnancy and Neurodevelopment in Childhood: A Prespecified Secondary Analysis of a Randomized Clinical Trial 10.1001/jamanetworkopen.2020.26018
Urbanized microbiota in infants, immune constitution and later risk of atopic diseases 10.1016/j.jaci.2020.12.621
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition 10.1016/j.chom.2021.03.017
Fish Oil Supplementation in Pregnancy and Neurodevelopment in Childhood—A Randomized Clinical Trial 10.1111/cdev.13541
The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial. 10.1164/rccm.202008-3226oc
Prophages in the infant gut are largely induced, and may be functionally relevant to their hosts 10.1101/2021.06.25.449885
Hundreds of viral families in the healthy infant gut 10.1101/2021.07.02.450849
Prenatal tobacco exposure and risk of asthma and allergy outcomes in childhood 10.1183/13993003.00453-2021
Hundreds of viral families in the healthy infant gut 10.21203/rs.3.rs-748587/v1
Asja Kunøe
Kunøe Asja
ORCID: 0000-0003-2854-6550
Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-017-02573-2
HIV testing in the Danish population: a national representative survey, 2000. 10.1080/14034940701431122
Hepatitis B vaccination coverage and risk factors associated with incomplete vaccination of children born to hepatitis B surface antigen-positive mothers, Denmark, 2006 to 2010. 10.2807/1560-7917.es.2016.21.7.30136
Compression bandage as treatment for ulcers induced by intramuscular self-injection of paraffin oil. 10.2340/00015555-0583
Hans Bisgaard
Bisgaard Hans / Bisgaard H / Hans Bisgaard
ORCID: 0000-0003-4131-7592
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Objective assessment of levels and patterns of physical activity in preschool children 10.1038/pr.2013.99
Public Hygiene Campaign in Denmark during the 2009 H1N1 Pandemic Had No Effect on Hospitalization Rate of Communicable Diseases in Children 10.1371/journal.pone.0070946
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Increased Risk of Pneumonia and Bronchiolitis after Bacterial Colonization of the Airways as Neonates 10.1164/rccm.201302-0215oc
Deep Phenotyping of the Unselected COPSAC 2010 Birth Cohort Study 10.1111/cea.12213
VEGFA variants are associated with pre-school lung function but not neonatal lung function 10.1111/cea.12188
The PCDH1-gene and asthma in early childhood 10.1183/09031936.00021613
Association between whole-blood polyunsaturated fatty acids in pregnant women and early fetal weight 10.1038/ejcn.2013.108
Antibiotic Use during Pregnancy Alters the Commensal Vaginal Microbiota 10.1111/1469-0691.12411
Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity 10.1093/hmg/ddt104
Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization 10.1038/ng.2694
Interaction between Asthma and Lung Function Growth in Early Life 10.1164/rccm.201110-1922oc
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Cord blood Th2-related chemokine CCL22 levels associate with elevated total-IgE during preschool age 10.1111/j.1365-2222.2012.04048.x
“To wheeze or not to wheeze”: That is not the question—the sequel 10.1016/j.jaci.2011.10.047
Neonatal bronchial hyperresponsiveness precedes acute severe viral bronchiolitis in infants 10.1016/j.jaci.2012.04.045
Alcohol Intake in Pregnancy Increases the Child's Risk of Atopic Dermatitis. The COPSAC Prospective Birth Cohort Study of a High Risk Population 10.1371/journal.pone.0042710
Validity of information on atopic disease and other illness in young children reported by parents in a prospective birth cohort study 10.1186/1471-2288-12-160
Infant acetaminophen use associates with early asthmatic symptoms independently of respiratory tract infections: The Copenhagen Prospective Study on Asthma in Childhood 2000 (COPSAC2000) cohort 10.1016/j.jaci.2012.09.017
Living with Cat and Dog Increases Vaginal Colonization with E. coli in Pregnant Women 10.1371/journal.pone.0046226
Neonatal Cytokine Profile in the Airway Mucosal Lining Fluid Is Skewed by Maternal Atopy 10.1164/rccm.201108-1471oc
Filaggrin and fissured skin 10.1111/j.1365-2133.2011.10530.x
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A genome-wide association meta-analysis identifies new childhood obesity loci 10.1038/ng.2247
Common variants at 12q15 and 12q24 are associated with infant head circumference 10.1038/ng.2238
Predictors of indoor fine particulate matter in infants’ bedrooms in Denmark 10.1016/j.envres.2010.10.007
Endotyping early childhood asthma by quantitative symptom assessment 10.1016/j.jaci.2011.02.007
Elevated Eosinophil Protein X in Urine from Healthy Neonates Precedes Development of Atopy in the First 6 Years of Life 10.1164/rccm.201101-0111oc
Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age 10.1016/j.jaci.2011.04.060
Robustness of genome-wide scanning using archived dried blood spot samples as a DNA source 10.1186/1471-2156-12-58
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Transfer of maternal IgE can be a common cause of increased IgE levels in cord blood 10.1016/j.jaci.2010.06.027
Elevated Exhaled Nitric Oxide in High-Risk Neonates Precedes Transient Early but Not Persistent Wheeze 10.1164/rccm.200909-1377oc
Respiratory medicines for children: current evidence, unlicensed use and research priorities 10.1183/09031936.00139508
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Increased risk of eczema but reduced risk of early wheezy disorder from exclusive breast-feeding in high-risk infants 10.1016/j.jaci.2010.01.026
A novel method for assessing unchallenged levels of mediators in nasal epithelial lining fluid 10.1016/j.jaci.2010.01.039
Variants of DENND1B Associated with Asthma in Children 10.1056/nejmoa0901867
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Objective assessments of allergic and nonallergic rhinitis in young children 10.1111/j.1398-9995.2009.02085.x
Risk analysis of early childhood eczema 10.1016/j.jaci.2009.03.046
Prenatal determinants of neonatal lung function in high-risk newborns 10.1016/j.jaci.2008.11.036
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A Registry-based Twin Study 10.1164/rccm.200809-1471oc
Safety and tolerability of montelukast in placebo-controlled pediatric studies and their open-label extensions 10.1002/ppul.21018
The causal direction in the association between respiratory syncytial virus hospitalization and asthma 10.1016/j.jaci.2008.10.042
Chromosome 17q21 Gene Variants Are Associated with Asthma and Exacerbations but Not Atopy in Early Childhood 10.1164/rccm.200809-1436oc
17q12-21 variants interact with smoke exposure as a risk factor for pediatric asthma but are equally associated with early-onset versus late-onset asthma in North Americans of European ancestry 10.1016/j.jaci.2009.05.047
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Delivery of Inhaled Medication to Children 10.3109/02770909709055389
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A New Strategy in Pediatric Asthma 10.1378/chest.130.6.1733
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Age dependent systemic exposure to inhaled salbutamol 10.1111/j.1365-2125.2007.02868.x
Quantitation of Microcirculatory Blood Flow Changes in Human Cutaneous Tissue Induced by Inflammatory Mediators. 10.1111/1523-1747.ep12263541
Leukotriene- and Histamine-Induced Increases in Vascular Permeability and Interstitial Transport in the Skin. 10.1111/1523-1747.ep12265527
A Mathematical Model of Aerosol Holding Chambers 10.1089/jam.1999.12.187
A Randomized Trial of Montelukast in Respiratory Syncytial Virus Postbronchiolitis 10.1164/rccm.200207-747oc
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In utero exposure to 25-hydroxyvitamin D and risk of childhood asthma, wheeze, and respiratory tract infections: A meta-analysis of birth cohort studies. 10.1016/j.jaci.2016.06.065
A genome-wide association meta-analysis of diarrhoeal disease in young children identifies FUT2 locus and provides plausible biological pathways. 10.1093/hmg/ddw264
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Sensitization trajectories in childhood revealed by using a cluster analysis. 10.1016/j.jaci.2017.01.041
A rare IL33 loss-of-function mutation reduces blood eosinophil counts and protects from asthma. 10.1371/journal.pgen.1006659
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A functional IFN-λ4-generating DNA polymorphism could protect older asthmatic women from aeroallergen sensitization and associate with clinical features of asthma. 10.1038/s41598-017-10467-y
Noninvasive Sampling of Mucosal Lining Fluid for the Quantification of In Vivo Upper Airway Immune-mediator Levels. 10.3791/55800
CDHR3 gene variation and childhood bronchiolitis. 10.1016/j.jaci.2017.06.044
Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus. 10.1038/s41467-017-00108-3
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Cesarean Delivery and Body Mass Index at 6 Months and Into Childhood. 10.1542/peds.2016-4066
Investigating the causal effect of smoking on hay fever and asthma: a Mendelian randomization meta-analysis in the CARTA consortium. 10.1038/s41598-017-01977-w
Precision allergy: Separate allergies to male and female dogs. 10.1016/j.jaip.2017.03.028
Safety and efficacy of tiotropium in children aged 1-5 years with persistent asthmatic symptoms: a randomised, double-blind, placebo-controlled trial. 10.1016/s2213-2600(18)30012-2
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Genome-wide association study of offspring birth weight in 86 577 women identifies five novel loci and highlights maternal genetic effects that are independent of fetal genetics. 10.1093/hmg/ddx429
Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects. 10.1016/j.ajhg.2017.12.005
Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks. 10.1038/s41588-017-0014-7
FeNO and Exercise Testing in Children at Risk of Asthma. 10.1016/j.jaip.2017.10.014
Cadherin-related Family Member 3 Genetics and Rhinovirus C Respiratory Illnesses. 10.1164/rccm.201705-1021oc
Prenatal vitamin D supplementation reduces risk of asthma/recurrent wheeze in early childhood: A combined analysis of two randomized controlled trials. 10.1371/journal.pone.0186657
Cat exposure in early life decreases asthma risk from the 17q21 high-risk variant. 10.1016/j.jaci.2017.07.044
Consortium genome-wide meta-analysis for childhood dental caries traits. 10.1093/hmg/ddy237
NKG2D gene variation and susceptibility to viral bronchiolitis in childhood. 10.1038/s41390-018-0086-9
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Prenatal Vitamin D Supplementation to Improve Health in Offspring. 10.1001/jamapediatrics.2018.0917
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Neonates colonized with pathogenic bacteria in the airways have a low-grade systemic inflammation. 10.1111/all.13461
The Role of Infections in Pediatric Asthma 10.3388/jspaci.17.383
Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis. 10.1038/s41588-018-0157-1
Effect of fish oil supplementation in pregnancy on bone, lean, and fat mass at six years: randomised clinical trial. 10.1136/bmj.k3312
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Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: A double-blind, randomized, placebo-controlled trial. 10.1016/j.ebiom.2018.11.035
Genetic, Clinical, and Environmental Factors Associated With Persistent Atopic Dermatitis in Childhood. 10.1001/jamadermatol.2018.4061
Fish Oil Supplementation in Pregnancy Increases Gestational Age, Size for Gestational Age, and Birth Weight in Infants: A Randomized Controlled Trial. 10.1093/jn/nxy204
Limited clinical value of exhaled volatile organic compound measurements in childhood asthma. 10.1183/23120541.00026-2018
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume. 10.1038/s41467-018-07863-x
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Multiple Breath Washout for Diagnosing Asthma and Persistent Wheeze in Young Children. 10.1513/annalsats.201807-503oc
Effect modification of FADS2 polymorphisms on the association between breastfeeding and intelligence: results from a collaborative meta-analysis. 10.1093/ije/dyy273
Low-frequency variation inTP53has large effects on head circumference and intracranial volume 10.1101/349845
Consortium genome-wide meta-analysis for childhood dental caries traits 10.1101/238824
Effect modification of FADS2 polymorphisms on the association between breastfeeding and intelligence: results from a collaborative meta-analysis 10.1101/184234
High-Dose Vitamin D Supplementation During Pregnancy and Asthma in Offspring at the Age of 6 Years. 10.1001/jama.2019.0052
Levels of Systemic Low-grade Inflammation in Pregnant Mothers and Their Offspring are Correlated. 10.1038/s41598-019-39620-5
Determinants of neurodevelopment in early childhood - results from the copenhagen prospective studies on asthma in childhood (COPSAC2010 ) mother-child cohort. 10.1111/apa.14753
Sensitivity of multiple breath washout to detect mild-to-moderate asthma in adolescence. 10.1016/j.jaip.2019.01.035
Reduced IL-2 response from peripheral blood mononuclear cells exposed to bacteria at 6 months of age is associated with elevated total-IgE and allergic rhinitis during the first 7 years of life. 10.1016/j.ebiom.2019.04.047
Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors. 10.1038/s41588-019-0403-1
Fish oil supplementation during pregnancy is protective against asthma/wheeze in offspring. 10.1016/j.jaip.2019.05.054
Single and Multiple Time-point Allergic Sensitization during Childhood and Risk of Asthma by Age 13. 10.1111/pai.13109
A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples. 10.3390/v11070667
Optimal timing of influenza vaccine during pregnancy: A systematic review and meta-analysis. 10.1111/irv.12649
Fish-oil supplementation in pregnancy, child metabolomics and asthma risk. 10.1016/j.ebiom.2019.07.057
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing. 10.1038/s42003-019-0540-1
Association of High-Dose Vitamin D Supplementation During Pregnancy With the Risk of Enamel Defects in Offspring: A 6-Year Follow-up of a Randomized Clinical Trial. 10.1001/jamapediatrics.2019.2545
The Role of the 17q21 Genotype in the Prevention of Early Childhood Asthma and Recurrent Wheeze by Vitamin D. 10.1183/13993003.00761-2019
Children with Asthma have Fixed Airway Obstruction through Childhood Unaffected by Exacerbations. 10.1016/j.jaip.2019.10.031
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma. 10.1038/s41467-019-12989-7
Environmental and Genetic Determinants of Serum 25(OH)-Vitamin D Levels during Pregnancy and Early Childhood. 10.3390/children6100116
Neonatal Urine Metabolic Profiling and Development of Childhood Asthma. 10.3390/metabo9090185
Whole Genome Sequencing Identifies CRISPLD2 as a Lung Function Gene in Children With Asthma. 10.1016/j.chest.2019.08.2202
Association of Birth Weight With Type 2 Diabetes and Glycemic Traits: A Mendelian Randomization Study. 10.1001/jamanetworkopen.2019.10915
Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration. 10.1038/s41467-019-11881-8
A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity. 10.1093/hmg/ddz161
Interaction between filaggrin mutations and neonatal cat exposure in atopic dermatitis. 10.1111/all.14162
Children mono-sensitized to Can f 5 show different reactions to male- and female dog allergen extract provocation: a randomized controlled trial. 10.1016/j.jaip.2019.12.012
Antibiotic exposure in infancy and development of BMI and body composition in childhood. 10.1016/j.eclinm.2019.10.020
Stability of the vaginal microbiota during pregnancy and its importance for early infant colonization 10.1101/2020.04.16.044255
Plasma 25-Hydroxyvitamin D Concentrations are Associated with Polyunsaturated Fatty Acid Metabolites in Young Children: Results from the Vitamin D Antenatal Asthma Reduction Trial. 10.3390/metabo10040151
Kernel integration by Graphical LASSO 10.1101/2020.03.11.986968
Effect of High-Dose vs Standard-Dose Vitamin D Supplementation in Pregnancy on Bone Mineralization in Offspring Until Age 6 Years: A Prespecified Secondary Analysis of a Double-Blinded, Randomized Clinical Trial. 10.1001/jamapediatrics.2019.6083
Distinct immune phenotypes in infants developing asthma during childhood. 10.1126/scitranslmed.aaw0258
Vitamin D Supplement During Pregnancy and Enamel Defects in Offspring-Reply. 10.1001/jamapediatrics.2019.5731
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial. 10.1038/s41467-020-14308-x
Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages. 10.1038/s41467-019-14042-z
Pharmacogenomic associations of adverse drug reactions in asthma: systematic review and research prioritisation. 10.1038/s41397-019-0140-y
Ecological succession in the vaginal microbiota during pregnancy and birth. 10.1038/s41396-020-0686-3
Early life bacterial airway colonization, local immune mediator response and risk of otitis media. 10.1099/jmm.0.001227
Breast milk n-3 long-chain polyunsaturated fatty acids and blood pressure: an individual participant meta-analysis. 10.1007/s00394-020-02310-4
Asthma-like Symptoms in Young Children Increase the Risk of COPD. 10.1016/j.jaci.2020.05.043
Allergen Specificity in Specific IgE Cutoff. 10.1001/jamapediatrics.2020.0944
Season of Birth Impacts the Neonatal Nasopharyngeal Microbiota. 10.3390/children7050045
Correction: Pharmacogenomic associations of adverse drug reactions in asthma: systematic review and research prioritization. 10.1038/s41397-020-0178-x
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age. 10.1016/j.jaci.2020.07.005
Parent-specific effects on risk of developing allergic sensitization and asthma in childhood. 10.1111/cea.13670
Effect of prenatal bisphenol A exposure on early childhood body mass index through epigenetic influence on the insulin-like growth factor 2 receptor (IGF2R) gene. 10.1016/j.envint.2020.105929
Delayed Motor Milestones Achievement in Infancy Associates with Perturbations of Amino Acids and Lipid Metabolic Pathways 10.3390/metabo10090337
Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits. 10.1371/journal.pgen.1008718
Association between childhood asthma and attention deficit hyperactivity or autism spectrum disorders: A systematic review with meta-analysis. 10.1111/cea.13750
Symptom burden of atopic dermatitis in early childhood assessed from daily monitoring of symptoms and topical steroid usage. 10.1016/j.jaad.2020.09.038
Maternal High-Dose Vitamin D Supplementation and Offspring Bone Mineralization Until Age 6 Years-Reply. 10.1001/jamapediatrics.2020.2017
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota. 10.1186/s40168-020-00895-w
Maternal Metabolome in Pregnancy and Childhood Asthma or Recurrent Wheeze in the Vitamin D Antenatal Asthma Reduction Trial 10.3390/metabo11020065
Cost of Illness in Young Children: A Prospective Birth Cohort Study 10.3390/children8030173
Maternal 17q21 genotype influences prenatal vitamin D effects on offspring asthma/recurrent wheeze. 10.1183/13993003.02012-2020
Characteristics and Mechanisms of a Sphingolipid-associated Childhood Asthma Endotype. 10.1164/rccm.202008-3206oc
Fish Oil Supplementation in Pregnancy and Neurodevelopment in Childhood-A Randomized Clinical Trial. 10.1111/cdev.13541
High-dose vitamin D during pregnancy and pathway gene polymorphisms in prevention of offspring persistent wheeze. 10.1111/pai.13453
Modeling transfer of vaginal microbiota from mother to infant in early life. 10.7554/elife.57051
FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses. 10.1038/s41467-020-19814-6
Urbanized microbiota in infants, immune constitution, and later risk of atopic diseases. 10.1016/j.jaci.2020.12.621
High-Dose Vitamin D Supplementation in Pregnancy and Neurodevelopment in Childhood: A Prespecified Secondary Analysis of a Randomized Clinical Trial. 10.1001/jamanetworkopen.2020.26018
Airway immune mediator levels during asthma-like symptoms in young children and their possible role in response to azithromycin. 10.1111/all.14651
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma. 10.1126/scitranslmed.aax9929
Mendelian randomization analysis does not support causal associations of birth weight with hypertension risk and blood pressure in adulthood. 10.1007/s10654-020-00638-z
GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI. 10.1126/sciadv.aaw3095
Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Large-scale association analyses identify host factors influencing human gut microbiome composition. 10.1038/s41588-020-00763-1
Jakob Stokholm
Stokholm Jakob
ORCID: 0000-0003-4989-9769
Associations between Inhaled Corticosteroid Use in the First 6 Years of Life and Obesity-related Traits 10.1164/rccm.202009-3537OC
Increasing Severity of Early‐Onset Atopic Dermatitis, But Not Late‐Onset, Associates with Development of Aeroallergen Sensitization and Allergic Rhinitis in Childhood 10.1111/all.15108
Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
FeNO and Exercise Testing in Children at Risk of Asthma 10.1016/j.jaip.2017.10.014
Cadherin-related Family Member 3 Genetics and Rhinovirus C Respiratory Illnesses. 10.1164/rccm.201705-1021oc
Prenatal vitamin D supplementation reduces risk of asthma/recurrent wheeze in early childhood 10.1371/journal.pone.0186657
Cat exposure in early life decreases asthma risk from the 17q21 high-risk variant 10.1016/j.jaci.2017.07.044
Noninvasive sampling of mucosal lining fluid for the quantification of in vivo upper airway immune-mediator levels 10.3791/55800
CDHR3 gene variation and childhood bronchiolitis 10.1016/j.jaci.2017.06.044
Vaginal seeding or vaginal microbial transfer from the mother to the caesarean-born neonate 10.1111/1471-0528.14792
Cesarean delivery and body mass index at 6 months and into childhood 10.1542/peds.2016-4066
Precision allergy 10.1016/j.jaip.2017.03.028
Antibiotics in Pregnancy Increase Children's Risk of Otitis Media and Ventilation Tubes 10.1016/j.jpeds.2016.12.046
The developing hypopharyngeal microbiota in early life 10.1186/s40168-016-0215-9
Allergic sensitization at school age is a systemic low-grade inflammatory disorder 10.1111/all.13108
Fish Oil-Derived Fatty Acids in Pregnancy and Wheeze and Asthma in Offspring. 10.1056/nejmoa1503734
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies 10.1186/s40168-016-0208-8
Incidence and determinants of ventilation tubes in Denmark 10.1371/journal.pone.0165657
Preeclampsia Associates with Asthma, Allergy, and Eczema in Childhood. 10.1164/rccm.201604-0806oc
Domestic dog exposure at birth reduces the incidence of atopic dermatitis 10.1111/all.12980
Cesarean section changes neonatal gut colonization 10.1016/j.jaci.2016.01.028
Chronic Chlamydia pneumoniae lung infection: a neglected explanation for macrolide effects in wheezing and asthma? - Authors' reply. 10.1016/s2213-2600(16)00050-3
Risk of Asthma from Cesarean Delivery Depends on Membrane Rupture 10.1016/j.jpeds.2015.12.066
Effect of vitamin D3 supplementation during pregnancy on risk of persistent wheeze in the offspring 10.1001/jama.2015.18318
Azithromycin for episodes with asthma-like symptoms in young children aged 1-3 years: a randomised, double-blind, placebo-controlled trial. 10.1016/s2213-2600(15)00500-7
Season of birth shapes neonatal immune function 10.1016/j.jaci.2015.08.041
The burden of severe asthma in childhood and adolescence: results from the paediatric U-BIOPRED cohorts. 10.1183/13993003.00780-2015
Clinical and inflammatory characteristics of the European U-BIOPRED adult severe asthma cohort. 10.1183/13993003.00779-2015
Blood lipid levels associate with childhood asthma, airway obstruction, bronchial hyperresponsiveness, and aeroallergen sensitization 10.1016/j.jaci.2015.05.033
Prelabor cesarean section bypasses natural immune cell maturation 10.1016/j.jaci.2015.04.044
Neonates with reduced neonatal lung function have systemic low-grade inflammation 10.1016/j.jaci.2014.11.020
The gut microbiota and inflammatory noncommunicable diseases: associations and potentials for gut microbiota therapies. 10.1016/j.jaci.2014.11.012
Cesarean section chronic immune disorders 10.1542/peds.2014-0596
Maternal antibiotic use and risk of asthma in offspring--Authors' reply. 10.1016/s2213-2600(14)70221-8
Maternal propensity for infections and risk of childhood asthma: a registry-based cohort study. 10.1016/s2213-2600(14)70152-3
Immune-mediated diseases and microbial exposure in early life 10.1111/cea.12291
Prevalence and predictors of antibiotic administration during pregnancy and birth 10.1371/journal.pone.0082932
Deep phenotyping of the unselected COPSAC2010 birth cohort study 10.1111/cea.12213
Antibiotic use during pregnancy alters the commensal vaginal microbiota 10.1111/1469-0691.12411
Altered Response to A(H1N1)pnd09 Vaccination in Pregnant Women 10.1371/journal.pone.0056700
Living with Cat and Dog Increases Vaginal Colonization with E. coli in Pregnant Women 10.1371/journal.pone.0046226
Neonatal cytokine profile in the airway mucosal lining fluid is skewed by maternal atopy. 10.1164/rccm.201108-1471oc
Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age 10.1016/j.jaci.2011.04.060
Association of bacteria and viruses with wheezy episodes in young children 10.1136/bmj.c4978
Bronchiolitis needs a revisit: Distinguishing between virus entities and their treatments 10.1111/all.13624
Effect of fish oil supplementation in pregnancy on bone, lean, and fat mass at six years 10.1136/bmj.k3312
Neonates colonized with pathogenic bacteria in the airways have a low-grade systemic inflammation 10.1111/all.13461
Fish Oil Supplementation in Pregnancy Increases Gestational Age, Size for Gestational Age, and Birth Weight in Infants 10.1093/jn/nxy204
Airway obstruction and bronchial reactivity from age 1 month until 13 years in children with asthma 10.1371/journal.pmed.1002722
Levels of Systemic Low-grade Inflammation in Pregnant Mothers and Their Offspring are Correlated 10.1038/s41598-019-39620-5
Determinants of neurodevelopment in early childhood - results from the Copenhagen Prospective Studies on Asthma in Childhood (COPSAC2010 ) Mother-Child Cohort 10.1111/apa.14753
High-Dose Vitamin D Supplementation during Pregnancy and Asthma in Offspring at the Age of 6 Years 10.1001/jama.2019.0052
Sensitivity of multiple breath washout to detect mild-to-moderate asthma in adolescence 10.1016/j.jaip.2019.01.035
Genetic, Clinical, and Environmental Factors Associated with Persistent Atopic Dermatitis in Childhood 10.1001/jamadermatol.2018.4061
Multiple Breath Washout for Diagnosing Asthma and Persistent Wheeze in Young Children. 10.1513/annalsats.201807-503oc
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children 10.1016/j.ebiom.2018.11.035
Limited clinical value of exhaled volatile organic compound measurements in childhood asthma 10.1183/23120541.00026-2018
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing 10.1038/s42003-019-0540-1
Reduced IL-2 response from peripheral blood mononuclear cells exposed to bacteria at 6 months of age is associated with elevated total-IgE and allergic rhinitis during the first 7 years of life 10.1016/j.ebiom.2019.04.047
A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples 10.20944/preprints201906.0125.v1
Single and multiple time-point allergic sensitization during childhood and risk of asthma by age 13 10.1111/pai.13109
A protocol for extraction of infective viromes suitable for metagenomics sequencing from low volume fecal samples 10.3390/v11070667
Association of High-Dose Vitamin D Supplementation During Pregnancy With the Risk of Enamel Defects in Offspring 10.1001/jamapediatrics.2019.2545
Fish-oil supplementation in pregnancy, child metabolomics and asthma risk 10.1016/j.ebiom.2019.07.057
The role of the 17q21 genotype in the prevention of early childhood asthma and recurrent wheeze by vitamin D 10.1183/13993003.00761-2019
Neonatal urine metabolic profiling and development of childhood asthma 10.3390/metabo9090185
Environmental and Genetic Determinants of Serum 25(OH)-Vitamin D Levels during Pregnancy and Early Childhood 10.3390/children6100116
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma 10.1038/s41467-019-12989-7
Distinct immune phenotypes in infants developing asthma during childhood 10.1126/scitranslmed.aaw0258
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial 10.1038/s41467-020-14308-x
Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages 10.1038/s41467-019-14042-z
Interaction between filaggrin mutations and neonatal cat exposure in atopic dermatitis 10.1111/all.14162
Children Monosensitized to Can f 5 Show Different Reactions to Male and Female Dog Allergen Extract Provocation 10.1016/j.jaip.2019.12.012
Antibiotic exposure in infancy and development of BMI and body composition in childhood 10.1016/j.eclinm.2019.10.020
Children with Asthma Have Fixed Airway Obstruction through Childhood Unaffected by Exacerbations 10.1016/j.jaip.2019.10.031
Questionnaire development for the Lolland-Falster Health Study, Denmark 10.1186/s12874-020-00931-1
Effect of High-Dose vs Standard-Dose Vitamin D Supplementation in Pregnancy on Bone Mineralization in Offspring Until Age 6 Years 10.1001/jamapediatrics.2019.6083
Correspondence to “Bronchiolitis needs a revisit: Distinguishing between virus entities and their treatments” 10.1111/all.14193
Early life bacterial airway colonization, local immune mediator response and risk of otitis media 10.1099/jmm.0.001227
Parent‐specific effects on risk of developing allergic sensitization and asthma in childhood 10.1111/cea.13670
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma 10.1126/scitranslmed.aax9929
Airway immune mediator levels during asthma‐like symptoms in young children and their possible role in response to azithromycin 10.1111/all.14651
FUT2–ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses 10.1038/s41467-020-19814-6
Urbanized microbiota in infants, immune constitution and later risk of atopic diseases 10.1016/j.jaci.2020.12.621
High-Dose Vitamin D Supplementation in Pregnancy and Neurodevelopment in Childhood 10.1001/jamanetworkopen.2020.26018
Allergen Specificity in Specific IgE Cutoff 10.1001/jamapediatrics.2020.0944
Association between childhood asthma and attention deficit hyperactivity or autism spectrum disorders 10.1111/cea.13750
Symptom burden of atopic dermatitis in early childhood assessed from daily monitoring of symptoms and topical steroid use 10.1016/j.jaad.2020.09.038
Delayed motor milestones achievement in infancy associates with perturbations of amino acids and lipid metabolic pathways 10.3390/metabo10090337
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota 10.1186/s40168-020-00895-w
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age 10.1016/j.jaci.2020.07.005
Genetics of human gut microbiome composition 10.1101/2020.06.26.173724
Asthma-like symptoms in young children increase the risk of COPD 10.1016/j.jaci.2020.05.043
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota 10.21203/rs.3.rs-21642/v1
Stability of the vaginal microbiota during pregnancy and its importance for early infant colonization 10.1101/2020.04.16.044255
Can perturbations in microbial maturation cause asthma? 10.1016/s2213-2600(20)30002-3
Kernel integration by Graphical LASSO 10.1101/2020.03.11.986968
A genome-wide association study of total child psychiatric problems scores 10.1101/2020.06.04.20121061
Ecological succession in the vaginal microbiota during pregnancy and birth 10.1038/s41396-020-0686-3
Season of Birth Impacts the Neonatal Nasopharyngeal Microbiota 10.3390/children7050045
Modeling transfer of vaginal microbiota from mother to infant in early life 10.7554/eLife.57051
The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial. 10.1164/rccm.202008-3226oc
High-dose vitamin D during pregnancy and pathway gene polymorphisms in prevention of offspring persistent wheeze 10.1111/pai.13453
Fish Oil Supplementation in Pregnancy and Neurodevelopment in Childhood—A Randomized Clinical Trial 10.1111/cdev.13541
Characteristics and Mechanisms of a Sphingolipid-associated Childhood Asthma Endotype. 10.1164/rccm.202008-3206oc
Cost of Illness in Young Children 10.3390/children8030173
Maternal 17q21 genotype influences prenatal vitamin D effects on offspring asthma/recurrent wheeze. 10.1183/13993003.02012-2020
On using kernel integration by graphical LASSO to study partial correlations between heterogeneous data sets 10.1002/cem.3324
Cesarean section and chronic immune disorders 10.1097/01.ogx.0000466336.81671.9f
Evolution of cerebral PET glucose metabolism from presymptomatic to symtomatic frontotemporal dementia linked to chromosome 3 (FTD-3) - a voxel based SPM analysis 10.1111/jnc.13692
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition 10.1016/j.chom.2021.03.017
Genome binning of viral entities from bulk metagenomics data 10.1101/2021.07.07.451412
Vaginal dysbiosis in pregnancy associates with risk of emergency cesarean section: a prospective cohort study 10.1016/j.cmi.2021.08.028
The maternal gut microbiome during pregnancy and offspring allergy and asthma 10.1016/j.jaci.2021.07.011
Ann-Marie Malby Schoos
Schoos Ann-Marie Malby
ORCID: 0000-0002-5827-0885
Increasing Severity of Early‐Onset Atopic Dermatitis, But Not Late‐Onset, Associates with Development of Aeroallergen Sensitization and Allergic Rhinitis in Childhood 10.1111/all.15108
Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-018-03150-x
Maturation of the gut microbiome and risk of asthma in childhood. 10.1038/s41467-017-02573-2
FeNO and Exercise Testing in Children at Risk of Asthma. 10.1016/j.jaip.2017.10.014
Precision allergy: Separate allergies to male and female dogs. 10.1016/j.jaip.2017.03.028
Sensitization trajectories in childhood revealed by using a cluster analysis. 10.1016/j.jaci.2017.01.041
Allergic sensitization at school age is a systemic low-grade inflammatory disorder. 10.1111/all.13108
Fish Oil-Derived Fatty Acids in Pregnancy and Wheeze and Asthma in Offspring. 10.1056/nejmoa1503734
High breast milk IL-1β level is associated with reduced risk of childhood eczema. 10.1111/cea.12770
Early indoor aeroallergen exposure is not associated with development of sensitization or allergic rhinitis in high-risk children. 10.1111/all.12853
Effect of Vitamin D3 Supplementation During Pregnancy on Risk of Persistent Wheeze in the Offspring: A Randomized Clinical Trial. 10.1001/jama.2015.18318
Azithromycin for episodes with asthma-like symptoms in young children aged 1-3 years: a randomised, double-blind, placebo-controlled trial. 10.1016/s2213-2600(15)00500-7
Atopic endotype in childhood. 10.1016/j.jaci.2015.10.004
Sensitization phenotypes based on protein groups and associations to allergic diseases in children. 10.1016/j.jaci.2015.09.035
Breast-feeding does not protect against allergic sensitization in early childhood and allergy-associated disease at age 7 years. 10.1016/j.jaci.2015.02.023
Disagreement between skin prick test and specific IgE in young children. 10.1111/all.12523
Cord blood 25(OH)-vitamin D deficiency and childhood asthma, allergy and eczema: the COPSAC2000 birth cohort study. 10.1371/journal.pone.0099856
Fraction of exhaled nitric oxide and bronchial responsiveness are associated and continuous traits in young children independent of asthma. 10.1378/chest.12-0658
Infant acetaminophen use associates with early asthmatic symptoms independently of respiratory tract infections: the Copenhagen Prospective Study on Asthma in Childhood 2000 (COPSAC(2000)) cohort. 10.1016/j.jaci.2012.09.017
Environmental and Genetic Determinants of Serum 25(OH)-Vitamin D Levels during Pregnancy and Early Childhood 10.3390/children6100116
Season of Birth Impacts the Neonatal Nasopharyngeal Microbiota 10.3390/children7050045
Parent‐specific effects on risk of developing allergic sensitization and asthma in childhood 10.1111/cea.13670
Neonatal airway immune profiles and asthma and allergy endpoints in childhood. 10.1111/all.14862
Component-resolved diagnostics in pet allergy: Current perspectives and future directions. 10.1016/j.jaci.2020.12.640
Immunological Outcomes of Allergen-Specific Immunotherapy in Food Allergy. 10.3389/fimmu.2020.568598
Allergen Specificity in Specific IgE Cutoff. 10.1001/jamapediatrics.2020.0944
Connectivity patterns between multiple allergen specific IgE antibodies and their association with severe asthma. 10.1016/j.jaci.2020.02.031
Children Monosensitized to Can f 5 Show Different Reactions to Male and Female Dog Allergen Extract Provocation: A Randomized Controlled Trial. 10.1016/j.jaip.2019.12.012
Single and multiple time-point allergic sensitization during childhood and risk of asthma by age 13. 10.1111/pai.13109
Reduced IL-2 response from peripheral blood mononuclear cells exposed to bacteria at 6 months of age is associated with elevated total-IgE and allergic rhinitis during the first 7 years of life. 10.1016/j.ebiom.2019.04.047
Environmental grass pollen levels in utero and at birth and cord blood IgE: Analysis of three birth cohorts. 10.1016/j.envint.2018.06.036
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age. 10.1016/j.jaci.2020.07.005
Increasing Severity of Early-Onset Atopic Dermatitis, But Not Late-Onset, Associates with Development of Aeroallergen Sensitization and Allergic Rhinitis in Childhood 10.22541/au.162577238.82748980/v1
Søren Sørensen
Sørensen Søren / Søren Johannes Sørensen
ORCID: 0000-0001-6227-9906
Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer 10.1371/journal.pone.0162390
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients 10.1016/j.jgar.2016.03.001
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies 10.1093/femsec/fiw087
Metagenomes provide valuable comparative information on soil microeukaryotes 10.1016/j.resmic.2016.03.003
High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples 10.1017/S2040174415001506
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases 10.1111/1751-7915.12343
Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark 10.1128/genomeA.00076-16
Genome sequence of Kocuria palustris strain W4 10.1128/genomeA.00074-16
Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse 10.1128/genomeA.00073-16
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods 10.1093/femsec/fiv157
Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark 10.1128/genomeA.00075-16
Draft genome assembly of two Pseudoclavibacter helvolus strains, G8 and W3, isolated from slaughterhouse environments 10.1128/genomeA.00077-16
Diverse gene functions in a soil mobilome 10.1016/j.soilbio.2016.07.018
Coping with copper 10.1093/femsec/fiw175
Coexistence facilitates interspecific biofilm formation in complex microbial communities 10.1111/1462-2920.13335
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment 10.1007/s00248-015-0692-6
Back to the future of soil metagenomics 10.3389/fmicb.2016.00073
Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission 10.1111/1462-2920.12827
Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming 10.1016/j.soilbio.2015.06.027
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law 10.1002/biot.201400537
Natural hot spots for gain of multiple resistances 10.1128/AEM.03240-14
Microbial diversity in a permanently cold and alkaline environment in Greenland 10.1371/journal.pone.0124863
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques 10.1016/j.ijfoodmicro.2015.09.012
Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere 10.1007/s00374-015-1045-9
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment 10.1016/j.fm.2015.04.008
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment 10.1111/1462-2920.12539
Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1 10.1021/acs.est.5b02309
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation 10.1038/ismej.2014.96
Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models 10.1128/AEM.02628-15
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments 10.1128/genomeA.00585-15
Current strategies for mobilome research 10.3389/fmicb.2014.00750
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community 10.1038/ismej.2014.191
Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts 10.1111/mec.13216
Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential 10.1128/AEM.00961-15
The microbiome of New World vultures 10.1038/ncomms6498
The giraffe (Giraffa camelopardalis) rumen microbiome 10.1111/1574-6941.12402
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids 10.1111/1574-6941.12397
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year 10.1128/AEM.04016-13
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal 10.1111/1751-7915.12079
Sequence and comparative analysis of Leuconostoc dairy bacteriophages 10.1016/j.ijfoodmicro.2014.01.019
Rapid TaqMan-based quantification of Chlorophyll d-containing Cyanobacteria in the Genus Acaryochloris 10.1128/AEM.00334-14
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts 10.1111/jam.12584
Metabolic variability in bioprocessing 10.1016/j.tibtech.2014.10.002
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine 10.1111/1574-6941.12189
Loss of microbial diversity in soils is coincident with reductions in some specialized functions 10.1111/1462-2920.12353
Identifying the core microbial community in the gut of fungus-growing termites 10.1111/mec.12874
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes 10.1038/nbt.2939
Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome 10.1371/journal.pone.0087924
Host-specific microbial communities in three sympatric North Sea sponges 10.1111/1574-6941.12400
High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions 10.1007/s00248-013-0315-z
Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures 10.1128/genomeA.00484-14
Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter 10.1128/genomeA.00485-14
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance 10.1111/1574-6941.12403
Draft genome sequence of Burkholderia sordidicola S170, a potential plant growth promoter isolated from coniferous forest soil in the Czech Republic 10.1128/genomeA.00810-14
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque 10.1016/j.jviromet.2013.10.040
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species 10.1128/genomeA.00265-14
Characterization of the gut microbiota in leptin deficient obese mice 10.1016/j.rvsc.2014.01.007
Bioinformatic approaches reveal metagenomic characterization of soil microbial community 10.1371/journal.pone.0093445
An improved method for including upper size range plasmids in metamobilomes 10.1371/journal.pone.0104405
The murine lung microbiome in relation to the intestinal and vaginal bacterial communities 10.1186/1471-2180-13-303
The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host 10.1111/1574-6968.12175
The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains 10.1111/1574-6968.12036
Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis 10.1111/mec.12380
Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes 10.1016/j.mimet.2013.09.016
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations 10.1007/s00248-012-0112-0
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny 10.1128/AEM.00653-13
Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques 10.1007/s00284-013-0382-x
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing 10.1016/j.soilbio.2011.12.023
Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors 10.1002/btpr.1694
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes 10.1371/journal.pone.0068484
Cell mass and cell cycle dynamics of an asynchronous budding yeast population 10.1002/bit.24749
Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation 10.3402/polar.v32i0.17390
Bacterial chitinolytic communities respond to chitin and pH alteration in soil 10.1128/AEM.02546-12
Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments 10.1128/AEM.02920-12
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures 10.1002/bit.25109
A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors 10.1186/1475-2859-12-100
454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters 10.1111/1574-6941.12148
The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors 10.1016/j.ijfoodmicro.2011.05.012
The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR 10.1016/j.ijfoodmicro.2011.11.014
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae 10.1371/journal.pone.0041259
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure 10.1128/AEM.01071-12
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing 10.1016/j.jbiotec.2012.01.020
Physiological heterogeneities in microbial populations and implications for physical stress tolerance 10.1186/1475-2859-11-94
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics 10.1007/s00253-012-4057-5
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella 10.1038/ismej.2011.181
Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing 10.1111/j.1469-0691.2012.03862.x
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential 10.1007/s10482-011-9633-7
Heterogeneity in recombinant protein production 10.1016/j.nbt.2012.08.217
Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse 10.1371/journal.pone.0046231
Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse 10.1007/s00125-012-2564-7
Draft Genome Sequence of the Soil Bacterium Burkholderia terrae Strain BS001, Which Interacts with Fungal Surface Structures 10.1128/JB.00725-12
Culture-dependent and -independent investigations of microbial diversity on urinary catheters 10.1128/JCM.01237-12
Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina 10.1128/AEM.00397-12
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing 10.1111/j.1574-6968.2012.02601.x
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities 10.1111/j.1365-2745.2011.01894.x
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil 10.1016/j.soilbio.2011.06.019
Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools 10.5772/20088
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0 10.1371/journal.pone.0019912
Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic 10.1111/j.1574-6941.2010.01016.x
Quantitative metagenomic analyses based on average genome size normalization 10.1128/AEM.02167-10
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07 10.1111/j.1574-6941.2010.01024.x
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria 10.1371/journal.pone.0019223
Investigation of diversity of plasmids carrying the blaTEM-52 gene 10.1093/jac/dkr331
Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect 10.1002/biot.201000410
Experimental methods and modeling techniques for description of cell population heterogeneity 10.1016/j.biotechadv.2011.03.007
Endolithic chlorophyll d-containing phototrophs 10.1038/ismej.2010.195
Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing 10.1016/j.idairyj.2010.10.007
Biofilms in soil 10.1007/978-90-481-3585-1
An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain 10.1371/journal.pone.0016193
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults 10.1371/journal.pone.0009085
The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria 10.1016/j.mimet.2009.08.006
Persistence Mechanisms of Conjugative Plasmids 10.1007/978-1-60327-853-9_5
Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains 10.1007/978-1-60327-853-9_15
All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant 10.1016/j.plasmid.2009.05.004
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains 10.1099/mic.0.2007/010454-0
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux 10.1016/j.plasmid.2008.03.003
Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences 10.1128/AEM.00049-08
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment 10.1016/j.envint.2007.07.011
Acclimation of subsurface microbial communities to mercury 10.1111/j.1574-6941.2008.00501.x
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups 10.1016/j.plasmid.2006.11.007
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria 10.1016/j.ympev.2006.11.013
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations 10.1111/j.1574-6968.2006.00536.x
Establishment and early succession of a multispecies biofilm composed of soil bacteria 10.1007/s00248-007-9222-5
Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat 10.1128/AEM.01971-06.
Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp. 10.1016/j.envpol.2005.11.047
Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil 10.1111/j.1462-2920.2005.00935.x
Making bio-sense of toxicity: new developments in whole-cell biosencors 10.1016/j.copbio.2005.12.007
Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms 10.1128/AEM.03022-05
Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site 10.1021/es060008u
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments 10.1016/j.mrgentox.2005.11.008
Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition 10.1007/s00248-004-0113-8
The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs 10.1089/mdr.2005.11.378
Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene 10.1016/j.femsle.2005.09.034
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters 10.1128/AEM.71.5.2338-2346.2005
The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum) 10.1016/S0038-0717(03)00214-1
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor 10.1016/S0378-1135(02)00029-9
The Effect of Long Term Mercury Pollution on the Soil Microbial Community 10.1111/j.1574-6941.2001.tb00821.x
An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities 10.1016/S0038-0717(01)00094-3
Application of a mer-lux biosensor for estimating bioavailable mercury in soil 10.1016/S0038-0717(99)00190-X
A new method for determining the metabolic activity of specific bacterial populations in soil using tritiated leucine and immunomagnetic separation 10.1007/s003740000236
Antagonism correlates with metabolic similarity in diverse bacteria 10.1073/pnas.1706016114
Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities 10.1128/AEM.02755-17
Fluorescence Recovery Allows the Implementation of a Fluorescence Reporter Gene Platform Applicable for the Detection and Quantification of Horizontal Gene Transfer in Anoxic Environments 10.1128/AEM.02507-17
Deep mutational scanning by FACS-sorting of encapsulated E. coli micro-colonies 10.1101/274753
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm 10.1038/s41396-018-0112-2
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer 10.1038/s41396-018-0183-0
Enhanced bacterial mutualism through an evolved biofilm phenotype 10.1038/s41396-018-0165-2
Impact of long-term agricultural management practices on soil prokaryotic communities 10.1016/j.soilbio.2018.11.002
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli 10.1128/AAC.02528-18
It is elemental: soil nutrient stoichiometry drives bacterial diversity 10.1111/1462-2920.13642
Direct detection and quantification of horizontal gene transfer by using flow cytometry and gfp as a reporter gene 10.1007/s00284-002-3978-0
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures 10.1002/bit.25204
High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA) 10.1038/ismej.2007.56
Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium 10.3389/fmicb.2017.00357
The cda GenoTox assay: A new and sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines 10.1016/j.mrgentox.2007.02.011
Conjugative plasmids: Vessels of the communal gene pool 10.1098/rstb.2009.0037
Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation 10.1038/ismej.2016.107
Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome 10.1093/femsec/fiy193
Microbiomes associated with infective stages of root-knot and lesion nematodes in soil 10.1371/journal.pone.0177145
Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil 10.1016/S0168-6496(01)00111-8
Stability and resilience of the intestinal microbiota in children in daycare - A 12 month cohort study 10.1186/s12866-018-1367-5
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches 10.1016/j.ijfoodmicro.2018.02.012
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies 10.1186/s40168-016-0208-8
Detection and quantification of tetracyclines by whole cell biosensors 10.1016/S0378-1097(00)00347-5
Metagenomic analysis of dairy bacteriophages: Extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures 10.1128/AEM.00888-17
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period 10.1371/journal.pone.0187858
Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere 10.1016/S0168-6496(99)00079-3
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities 10.1016/j.mimet.2018.07.009
Effects of tylosin as a disturbance on the soil microbial community 10.1016/S0038-0717(01)00134-1
Recovery of GFP-labeled bacteria for culturing and molecular analysis after cell sorting using a benchtop flow cytometer 10.1007/s00248-003-1069-9
Adaptation of the bacterial community to mercury contamination 10.1016/S0378-1097(01)00376-7
Detection of oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry 10.1128/AEM.67.1.239-244.2001
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives 10.1016/j.plasmid.2018.08.002
The diversity and function of soil microbial communities exposed to different disturbances 10.1007/s00248-001-0042-8
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium 10.1038/ismej.2015.14
Methods for detection of conjugative plasmid transfer in aquatic environments 10.1007/s002849900378
Survival of Escherichia coli K12 in seawater 10.1111/j.1574-6968.1991.tb04708.x-i1
Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry 10.1016/S0378-1097(04)00015-1
Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization 10.3389/fmicb.2016.01366
Microbial indicators for soil quality 10.1007/s00374-017-1248-3
Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions 10.1073/pnas.1804850115
Utilization of phenoxyacetic acid, by strains using either the ortho or meta cleavage of catechol during phenol degradation, after conjugal transfer of tfdA, the gene encoding a 2,4-dichlorophenoxyacetic acid/2-oxoglutarate dioxygenase 10.1007/s002530051383
Survival of Escherichia coli K12 in seawater 10.1016/0378-1097(91)90512-9
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters 10.1038/ismej.2016.16
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages 10.1186/s40168-018-0606-1
Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D 10.1016/j.heliyon.2017.e00262
The effect of longterm exposure to mercury on the bacterial community in marine sediment 10.1007/s002849900312
Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels 10.1016/j.plasmid.2016.10.001
Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization 10.1093/femsec/fiy027
The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia Coli and Pseudomonas fluorescens 10.1007/s002849900320
The effect of long-term mercury pollution on the soil microbial community 10.1016/S0168-6496(01)00112-X
Plasmid-encoded multidrug efflux pump conferring resistance to olaquindox in Escherichia coli 10.1128/AAC.48.9.3332-3337.2004
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome 10.1016/j.jhazmat.2017.09.046
Studying plasmid horizontal transfer in situ: A critical review 10.1038/nrmicro1232
Erratum: Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood (Nature communications (2018) 9 1 (141)) 10.1038/s41467-018-03150-x
Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner 10.1186/s12931-016-0435-3
A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media 10.1080/1040841X.2016.1252312
The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems 10.1007/s00248-001-0025-9
Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats 10.1128/AEM.70.2.758-764.2004
The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review 10.1071/EN11140
The interconnection between biofilm formation and horizontal gene transfer 10.1111/j.1574-695X.2012.00960.x
Synergistic interactions within a multispecies biofilm enhance individual species protection against grazing by a pelagic protozoan 10.3389/fmicb.2017.02649
Presence of N-acyl homoserine lactones in soil detected by a whole-cell biosensor and flow cytometry 10.1007/s00248-002-2028-6
Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community 10.1021/acs.estlett.8b00105
Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software 10.1038/nmeth.4458
Effects of soil pre-treatment with Basamid® granules, Brassica juncea, Raphanus sativus, and tagetes patula on bacterial and fungal communities at two apple replant disease sites 10.3389/fmicb.2017.01604
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass 10.1016/j.ijfoodmicro.2019.02.003
Erratum: The microbiome of New World vultures (Nature Communications (2014) 5 (5498) DOI:10.1038/ncomms6498) 10.1038/ncomms9774
Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere 10.1128/AEM.00013-06
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites 10.1016/j.envint.2019.02.048
How Microbial Aggregates Protect against Nanoparticle Toxicity 10.1016/j.tibtech.2018.06.009
Use of a PNA probe to block DNA-mediated PCR product formation in prokaryotic RT-PCR 10.2144/000112437
Maturation of the gut microbiome and risk of asthma in childhood 10.1038/s41467-017-02573-2
Genome sequence of Psychrobacter cibarius strain W1 10.1128/genomeA.00078-16
Effect of root exudates and bacterial metabolic activity on conjugal gene transfer in the rhizosphere of a marsh plant 10.1016/S0168-6496(98)00007-5
Investigation of diversity of plasmids carrying the bla TEM-52 gene 10.1093/jac/dkr559
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam 10.1093/femsec/fiy214
Synergistic interactions in microbial biofilms facilitate the establishment of opportunistic pathogenic fungi in household dishwashers 10.3389/fmicb.2018.00021
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community 10.1038/s41598-017-16633-6
Enhanced degradation of phenoxyacetic acid in soil by horizontal transfer of the tfdA gene encoding a 2,4-dichlorophenoxyacetic acid dioxygenase 10.1016/S0168-6496(00)00113-6
The bacterial microbiota in first-void urine from men with and without idiopathic urethritis 10.1371/journal.pone.0201380
Nutrient fortification of human donor milk affects intestinal function and protein metabolism in preterm pigs 10.1093/jn/nxx033
Deciphering conjugative plasmid permissiveness in wastewater microbiomes 10.1111/mec.14138
Effect of genomic location on horizontal transfer of a recombinant gene cassette between Pseudomonas strains in the rhizosphere and spermosphere of barley seedlings 10.1007/s002840010197
A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil 10.1371/journal.pone.0187116
Conjugative plasmid conferring resistance to olaquindox 10.1128/AAC.47.2.798-799.2003
Biofilms in chronic infections - A matter of opportunity - Monospecies biofilms in multispecies infections 10.1111/j.1574-695X.2010.00714.x
Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system 10.1016/S0378-1119(96)00688-9
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: A double-blind, randomized, placebo-controlled trial 10.1016/j.ebiom.2018.11.035
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina 10.1038/ismej.2017.192
Survival of Escherichia coli K12 in seawater 10.1111/j.1574-6941.1991.tb01720.x
Versatile biosensor vectors for detection and quantification of mercury 10.1016/S0378-1097(00)00462-6
Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner 10.1038/ismej.2016.98
Erratum: Group-specific PCR primers to amplify 24S a-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis (Microbial Ecology 42 (109-000)) 10.1007/s00248-001-0019-7
Bacterial social interactions and the emergence of community-intrinsic properties 10.1016/j.mib.2017.11.018
Soil bacteria show different tolerance ranges to an unprecedented disturbance 10.1007/s00374-017-1255-4
The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures 10.1002/btpr.2796
Genetic barcoding of dark-spored myxomycetes (Amoebozoa)—Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies 10.1111/1755-0998.12725
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria 10.1093/jac/dkm167
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps 10.1007/s00248-019-01347-1
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