Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
Wenzheng Liu
Samuel Jacquiod
Asker Brejnrod
Jakob Russel
Mette Burmølle
Søren Johannes Sørensen
The ISME Journal, 2019
Asker Brejnrod
Brejnrod Asker
ORCID: 0000-0002-1327-2051
The developing hypopharyngeal microbiota in early life
10.1186/s40168-016-0215-9
A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation
10.1002/mnfr.201600528
Coping with copper
10.1093/femsec/fiw175
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
10.1186/s40168-016-0208-8
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
10.1111/jam.12584
Soil bacteria show different tolerance ranges to an unprecedented disturbance
10.1007/s00374-017-1255-4
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
10.1128/AEM.02755-17
Eosinophilic airway inflammation in asthmatic patients is associated with an altered airway microbiome
10.1016/j.jaci.2016.10.046
Deciphering conjugative plasmid permissiveness in wastewater microbiomes
10.1111/mec.14138
Maturation of the gut microbiome and risk of asthma in childhood
10.1038/s41467-017-02573-2
Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
10.1038/s41598-017-16007-y
Local diversity of heathland Cercozoa explored by in-depth sequencing
10.1038/ismej.2016.31
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
10.1016/j.fm.2015.04.008
Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora
10.1128/genomeA.00026-17
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance
10.1111/1574-6941.12403
Genetic barcoding of dark-spored myxomycetes (Amoebozoa)
10.1111/1755-0998.12725
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
10.1371/journal.pone.0187858
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium
10.1038/ismej.2015.14
Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
10.3389/fmicb.2017.01832
In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment
10.1128/AEM.01450-18
Papio spp. Colon microbiome and its link to obesity in pregnancy
10.1111/jmp.12366
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children
10.1016/j.ebiom.2018.11.035
Stability and resilience of the intestinal microbiota in children in daycare - a 12 month cohort study
10.1186/s12866-018-1367-5
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
10.1186/s40168-018-0606-1
The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome
10.1002/mnfr.201700976
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
10.1016/j.ijfoodmicro.2019.02.003
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites
10.1016/j.envint.2019.02.048
Variations in microbiome composition of sewer biofilms due to ferrous and ferric iron dosing
10.1080/23311843.2019.1595293
Treatment of Active Crohn's Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition
10.1053/j.gastro.2018.12.002
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
10.1007/s00248-019-01347-1
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
10.1038/s41467-019-12989-7
The human milk microbiota is modulated by maternal diet
10.3390/microorganisms7110502
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
10.1038/s41396-019-0494-9
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial
10.1038/s41467-020-14308-x
Implementations of the chemical structural and compositional similarity metric in R and Python
10.1101/546150
Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age
10.3390/nu12041081
Ecological succession in the vaginal microbiota during pregnancy and birth
10.1038/s41396-020-0686-3
Modeling transfer of vaginal microbiota from mother to infant in early life
10.7554/eLife.57051
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
10.1101/2021.01.26.428250
Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment
10.1101/2021.06.04.446988
Søren Sørensen
Sørensen Søren
/ Søren Johannes Sørensen
ORCID: 0000-0001-6227-9906
Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer
10.1371/journal.pone.0162390
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients
10.1016/j.jgar.2016.03.001
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies
10.1093/femsec/fiw087
Metagenomes provide valuable comparative information on soil microeukaryotes
10.1016/j.resmic.2016.03.003
High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples
10.1017/S2040174415001506
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases
10.1111/1751-7915.12343
Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark
10.1128/genomeA.00076-16
Genome sequence of Kocuria palustris strain W4
10.1128/genomeA.00074-16
Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse
10.1128/genomeA.00073-16
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods
10.1093/femsec/fiv157
Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark
10.1128/genomeA.00075-16
Draft genome assembly of two Pseudoclavibacter helvolus strains, G8 and W3, isolated from slaughterhouse environments
10.1128/genomeA.00077-16
Diverse gene functions in a soil mobilome
10.1016/j.soilbio.2016.07.018
Coping with copper
10.1093/femsec/fiw175
Coexistence facilitates interspecific biofilm formation in complex microbial communities
10.1111/1462-2920.13335
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment
10.1007/s00248-015-0692-6
Back to the future of soil metagenomics
10.3389/fmicb.2016.00073
Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission
10.1111/1462-2920.12827
Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming
10.1016/j.soilbio.2015.06.027
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law
10.1002/biot.201400537
Natural hot spots for gain of multiple resistances
10.1128/AEM.03240-14
Microbial diversity in a permanently cold and alkaline environment in Greenland
10.1371/journal.pone.0124863
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques
10.1016/j.ijfoodmicro.2015.09.012
Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere
10.1007/s00374-015-1045-9
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
10.1016/j.fm.2015.04.008
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment
10.1111/1462-2920.12539
Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1
10.1021/acs.est.5b02309
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation
10.1038/ismej.2014.96
Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models
10.1128/AEM.02628-15
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments
10.1128/genomeA.00585-15
Current strategies for mobilome research
10.3389/fmicb.2014.00750
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
10.1038/ismej.2014.191
Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts
10.1111/mec.13216
Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential
10.1128/AEM.00961-15
The microbiome of New World vultures
10.1038/ncomms6498
The giraffe (Giraffa camelopardalis) rumen microbiome
10.1111/1574-6941.12402
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids
10.1111/1574-6941.12397
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year
10.1128/AEM.04016-13
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal
10.1111/1751-7915.12079
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
10.1016/j.ijfoodmicro.2014.01.019
Rapid TaqMan-based quantification of Chlorophyll d-containing Cyanobacteria in the Genus Acaryochloris
10.1128/AEM.00334-14
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
10.1111/jam.12584
Metabolic variability in bioprocessing
10.1016/j.tibtech.2014.10.002
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
10.1111/1574-6941.12189
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
10.1111/1462-2920.12353
Identifying the core microbial community in the gut of fungus-growing termites
10.1111/mec.12874
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
10.1038/nbt.2939
Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
10.1371/journal.pone.0087924
Host-specific microbial communities in three sympatric North Sea sponges
10.1111/1574-6941.12400
High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions
10.1007/s00248-013-0315-z
Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures
10.1128/genomeA.00484-14
Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter
10.1128/genomeA.00485-14
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance
10.1111/1574-6941.12403
Draft genome sequence of Burkholderia sordidicola S170, a potential plant growth promoter isolated from coniferous forest soil in the Czech Republic
10.1128/genomeA.00810-14
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque
10.1016/j.jviromet.2013.10.040
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species
10.1128/genomeA.00265-14
Characterization of the gut microbiota in leptin deficient obese mice
10.1016/j.rvsc.2014.01.007
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
10.1371/journal.pone.0093445
An improved method for including upper size range plasmids in metamobilomes
10.1371/journal.pone.0104405
The murine lung microbiome in relation to the intestinal and vaginal bacterial communities
10.1186/1471-2180-13-303
The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host
10.1111/1574-6968.12175
The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains
10.1111/1574-6968.12036
Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis
10.1111/mec.12380
Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes
10.1016/j.mimet.2013.09.016
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations
10.1007/s00248-012-0112-0
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny
10.1128/AEM.00653-13
Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques
10.1007/s00284-013-0382-x
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing
10.1016/j.soilbio.2011.12.023
Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors
10.1002/btpr.1694
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
10.1371/journal.pone.0068484
Cell mass and cell cycle dynamics of an asynchronous budding yeast population
10.1002/bit.24749
Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation
10.3402/polar.v32i0.17390
Bacterial chitinolytic communities respond to chitin and pH alteration in soil
10.1128/AEM.02546-12
Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments
10.1128/AEM.02920-12
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures
10.1002/bit.25109
A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors
10.1186/1475-2859-12-100
454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters
10.1111/1574-6941.12148
The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors
10.1016/j.ijfoodmicro.2011.05.012
The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR
10.1016/j.ijfoodmicro.2011.11.014
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae
10.1371/journal.pone.0041259
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure
10.1128/AEM.01071-12
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
10.1016/j.jbiotec.2012.01.020
Physiological heterogeneities in microbial populations and implications for physical stress tolerance
10.1186/1475-2859-11-94
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics
10.1007/s00253-012-4057-5
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella
10.1038/ismej.2011.181
Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing
10.1111/j.1469-0691.2012.03862.x
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential
10.1007/s10482-011-9633-7
Heterogeneity in recombinant protein production
10.1016/j.nbt.2012.08.217
Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse
10.1371/journal.pone.0046231
Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse
10.1007/s00125-012-2564-7
Draft Genome Sequence of the Soil Bacterium Burkholderia terrae Strain BS001, Which Interacts with Fungal Surface Structures
10.1128/JB.00725-12
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
10.1128/JCM.01237-12
Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina
10.1128/AEM.00397-12
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing
10.1111/j.1574-6968.2012.02601.x
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
10.1111/j.1365-2745.2011.01894.x
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil
10.1016/j.soilbio.2011.06.019
Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools
10.5772/20088
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0
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Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic
10.1111/j.1574-6941.2010.01016.x
Quantitative metagenomic analyses based on average genome size normalization
10.1128/AEM.02167-10
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07
10.1111/j.1574-6941.2010.01024.x
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
10.1371/journal.pone.0019223
Investigation of diversity of plasmids carrying the blaTEM-52 gene
10.1093/jac/dkr331
Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect
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Experimental methods and modeling techniques for description of cell population heterogeneity
10.1016/j.biotechadv.2011.03.007
Endolithic chlorophyll d-containing phototrophs
10.1038/ismej.2010.195
Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing
10.1016/j.idairyj.2010.10.007
Biofilms in soil
10.1007/978-90-481-3585-1
An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain
10.1371/journal.pone.0016193
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
10.1371/journal.pone.0009085
The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria
10.1016/j.mimet.2009.08.006
Persistence Mechanisms of Conjugative Plasmids
10.1007/978-1-60327-853-9_5
Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains
10.1007/978-1-60327-853-9_15
All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant
10.1016/j.plasmid.2009.05.004
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains
10.1099/mic.0.2007/010454-0
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
10.1016/j.plasmid.2008.03.003
Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences
10.1128/AEM.00049-08
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment
10.1016/j.envint.2007.07.011
Acclimation of subsurface microbial communities to mercury
10.1111/j.1574-6941.2008.00501.x
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups
10.1016/j.plasmid.2006.11.007
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria
10.1016/j.ympev.2006.11.013
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations
10.1111/j.1574-6968.2006.00536.x
Establishment and early succession of a multispecies biofilm composed of soil bacteria
10.1007/s00248-007-9222-5
Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat
10.1128/AEM.01971-06.
Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp.
10.1016/j.envpol.2005.11.047
Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil
10.1111/j.1462-2920.2005.00935.x
Making bio-sense of toxicity: new developments in whole-cell biosencors
10.1016/j.copbio.2005.12.007
Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms
10.1128/AEM.03022-05
Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site
10.1021/es060008u
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments
10.1016/j.mrgentox.2005.11.008
Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition
10.1007/s00248-004-0113-8
The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs
10.1089/mdr.2005.11.378
Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene
10.1016/j.femsle.2005.09.034
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters
10.1128/AEM.71.5.2338-2346.2005
The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)
10.1016/S0038-0717(03)00214-1
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor
10.1016/S0378-1135(02)00029-9
The Effect of Long Term Mercury Pollution on the Soil Microbial Community
10.1111/j.1574-6941.2001.tb00821.x
An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities
10.1016/S0038-0717(01)00094-3
Application of a mer-lux biosensor for estimating bioavailable mercury in soil
10.1016/S0038-0717(99)00190-X
A new method for determining the metabolic activity of specific bacterial populations in soil using tritiated leucine and immunomagnetic separation
10.1007/s003740000236
Antagonism correlates with metabolic similarity in diverse bacteria
10.1073/pnas.1706016114
Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities
10.1128/AEM.02755-17
Fluorescence Recovery Allows the Implementation of a Fluorescence Reporter Gene Platform Applicable for the Detection and Quantification of Horizontal Gene Transfer in Anoxic Environments
10.1128/AEM.02507-17
Deep mutational scanning by FACS-sorting of encapsulated E. coli micro-colonies
10.1101/274753
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
10.1038/s41396-018-0112-2
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer
10.1038/s41396-018-0183-0
Enhanced bacterial mutualism through an evolved biofilm phenotype
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Impact of long-term agricultural management practices on soil prokaryotic communities
10.1016/j.soilbio.2018.11.002
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli
10.1128/AAC.02528-18
It is elemental: soil nutrient stoichiometry drives bacterial diversity
10.1111/1462-2920.13642
Direct detection and quantification of horizontal gene transfer by using flow cytometry and gfp as a reporter gene
10.1007/s00284-002-3978-0
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures
10.1002/bit.25204
High diversity of bacterial mercuric reductase genes from surface and sub-surface floodplain soil (Oak Ridge, USA)
10.1038/ismej.2007.56
Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium
10.3389/fmicb.2017.00357
The cda GenoTox assay: A new and sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines
10.1016/j.mrgentox.2007.02.011
Conjugative plasmids: Vessels of the communal gene pool
10.1098/rstb.2009.0037
Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation
10.1038/ismej.2016.107
Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome
10.1093/femsec/fiy193
Microbiomes associated with infective stages of root-knot and lesion nematodes in soil
10.1371/journal.pone.0177145
Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil
10.1016/S0168-6496(01)00111-8
Stability and resilience of the intestinal microbiota in children in daycare - A 12 month cohort study
10.1186/s12866-018-1367-5
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
10.1016/j.ijfoodmicro.2018.02.012
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
10.1186/s40168-016-0208-8
Detection and quantification of tetracyclines by whole cell biosensors
10.1016/S0378-1097(00)00347-5
Metagenomic analysis of dairy bacteriophages: Extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
10.1128/AEM.00888-17
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
10.1371/journal.pone.0187858
Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere
10.1016/S0168-6496(99)00079-3
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities
10.1016/j.mimet.2018.07.009
Effects of tylosin as a disturbance on the soil microbial community
10.1016/S0038-0717(01)00134-1
Recovery of GFP-labeled bacteria for culturing and molecular analysis after cell sorting using a benchtop flow cytometer
10.1007/s00248-003-1069-9
Adaptation of the bacterial community to mercury contamination
10.1016/S0378-1097(01)00376-7
Detection of oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry
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Samuel Jacquiod
Jacquiod Samuel
ORCID: 0000-0002-0713-7996
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