Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats
Petras, D. Nothias, L. F. Quinn, R. A. Alexandrov, T. Bandeira, N. Bouslimani, A. Castro-Falcon, G. Chen, L. Y. Dang, T. Floros, D. J. Hook, V. Garg, N. Haffner, N. Jiang, Y. K. Kapono, C. A. Koester, I. Knight, R. Leber, C. A. Ling, T. J. Luzzatto-Knaan, T. McCall, L. I. McGrath, A. P. Meehan, M. J. Merritt, J. K. Mills, R. H. Morton, J. Podvin, S. Protsyuk, I. Purdy, T. Satterfield, K. Searles, S. Shah, S. Shires, S. Steffen, D. White, M. Todoric, J. Tuttle, R. Wojnicz, A. Sapp, V. Vargas, F. Yang, J. Zhang, C. Dorrestein, P. C.
Neha Garg
Garg Neha
ORCID: 0000-0002-2760-7123
Creating a 3D microbial and chemical snapshot of a human habitat 10.1038/s41598-018-21541-4
Dereplication of peptidic natural products through database search of mass spectra 10.1038/nchembio.2219
Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae 10.7554/eLife.24214
Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules 10.1128/mSystems.00058-17
Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment 10.1128/mSystems.00016-17
Natural products as mediators of disease 10.1039/c6np00063k
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung 10.1016/j.chom.2017.10.001
Two Flavoenzymes Catalyze the Post-Translational Generation of 5-Chlorotryptophan and 2-Aminovinyl-Cysteine during NAI-107 Biosynthesis 10.1021/acschembio.6b01031
Characterization of the Stereochemical Configuration of Lanthionines Formed by the Lanthipeptide Synthetase GeoM 10.1002/bip.22876
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats 10.1021/acs.analchem.6b03456
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome 10.1038/ismej.2015.207
Microbiome-wide association studies link dynamic microbial consortia to disease 10.1038/nature18850
Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen 10.1128/mSystems.00139-16
Chemoenzymatic Synthesis of Acyl Coenzyme A Substrates Enables in Situ Labeling of Small Molecules and Proteins 10.1021/acs.orglett.5b02113
Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures 10.1016/j.ijms.2014.06.005
Chemical Rescue and Inhibition Studies to Determine the Role of Arg301 in Phosphite Dehydrogenase 10.1371/journal.pone.0087134
Mass spectrometry of natural products: current, emerging and future technologies 10.1039/c4np00044g
Mode of action and structure-activity relationship studies of geobacillin I 10.1038/ja.2013.112
Specialized Metabolites from the Microbiome in Health and Disease 10.1016/j.cmet.2014.10.016
Substrate Specificity of the Lanthipeptide Peptidase ElxP and the Oxidoreductase ElxO 10.1021/cb5002526
The Intestinal Metabolome: An Intersection Between Microbiota and Host 10.1053/j.gastro.2014.03.001
In vitro activity of the nisin dehydratase NisB 10.1073/pnas.1222488110
Cloning, sequence analysis, expression of Cyathus bulleri laccase in Pichia pastoris and characterization of recombinant laccase 10.1186/1472-6750-12-75
Lantibiotics from Geobacillus thermodenitrificans 10.1073/pnas.1116815109
Production of Lantipeptides in Escherichia coli 10.1021/ja109044r
Mass Spectrometry-Based Integration and Expansion of the Chemical Diversity Harbored Within a Marine Sponge. 10.1007/s13361-019-02207-5
The chemical topology of a bacterial swarm. 10.1074/jbc.H118.003178
Chemoenzymatic Synthesis of Starting Materials and Characterization of Halogenases Requiring Acyl Carrier Protein-Tethered Substrates. 10.1016/bs.mie.2018.01.028
Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis 10.1128/msystems.00375-19
Feature-based molecular networking in the GNPS analysis environment. 10.1038/s41592-020-0933-6
Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. 10.3390/md18020124
Global chemical effects of the microbiome include new bile-acid conjugations. 10.1038/s41586-020-2047-9
Differences in Cystic Fibrosis-Associated Burkholderia spp. Bacteria Metabolomes after Exposure to the Antibiotic Trimethoprim. 10.1021/acsinfecdis.9b00513
Precursor-Guided Mining of Marine Sponge Metabolomes Lends Insight into Biosynthesis of Pyrrole-Imidazole Alkaloids. 10.1021/acschembio.0c00375
A community resource for paired genomic and metabolomic data mining. 10.1038/s41589-020-00724-z
Presence of Bromotyrosine Alkaloids in Marine Sponges Is Independent of Metabolomic and Microbiome Architectures. 10.1128/msystems.01387-20
LanCLs add glutathione to dehydroamino acids generated at phosphorylated sites in the proteome. 10.1016/j.cell.2021.04.001
Sahil Shah
Shah Sahil
ORCID: 0000-0002-6601-219X
The Role of Axon Transport in Neuroprotection and Regeneration 10.1002/dneu.22630
Cholinergic neural activity directs retinal layer-specific angiogenesis and blood retinal barrier formation 10.1038/s41467-019-10219-8
The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo. 10.1016/j.celrep.2019.07.037
Regulation of Neuronal Survival and Axon Growth by a Perinuclear cAMP Compartment. 10.1523/jneurosci.2752-18.2019
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats. 10.1021/acs.analchem.6b03456
Maps of interaural delay in the owl's nucleus laminaris. 10.1152/jn.00644.2015
A functional circuit model of interaural time difference processing. 10.1152/jn.00484.2014
Maps of ITD in the nucleus laminaris of the barn owl. 10.1007/978-1-4614-1590-9_24
Twice-weekly fluconazole prophylaxis in premature infants: association with cholestasis. 10.1111/j.1442-200x.2010.03286.x
The effect of comprehensive infection control measures on the rate of late-onset bloodstream infections in very low-birth-weight infants. 10.1055/s-0030-1268237
Dana Ramms
Ramms Dana / Dana J. Ramms / Dana Ramms
ORCID: 0000-0002-7700-1728
4E-BP1 Is a Tumor Suppressor Protein Reactivated by mTOR Inhibition in Head and Neck Cancer. 10.1158/0008-5472.can-18-1220
GNAS R201C Induces Pancreatic Cystic Neoplasms in Mice That Express Activated KRAS by Inhibiting YAP1 Signaling. 10.1053/j.gastro.2018.08.006
Expression of an active Gαs mutant in skeletal stem cells is sufficient and necessary for fibrous dysplasia initiation and maintenance. 10.1073/pnas.1713710115
Genetic evidence that β-arrestins are dispensable for the initiation of β2-adrenergic receptor signaling to ERK. 10.1126/scisignal.aal3395
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats. 10.1021/acs.analchem.6b03456
Evaluating the anticancer properties of liposomal copper in a nude xenograft mouse model of human prostate cancer: formulation, in vitro, in vivo, histology and tissue distribution studies. 10.1007/s11095-014-1403-6
Iron Complexation to Histone Deacetylase Inhibitors SAHA and LAQ824 in PEGylated Liposomes Can Considerably Improve Pharmacokinetics in Rats 10.18433/j3ts4v
Irina Koester
Koester Irina
ORCID: 0000-0002-1571-882X
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 10.1038/s41587-019-0209-9
Biological Impacts of the 2013–2015 Warm-Water Anomaly in the Northeast Pacific: Winners, Losers, and the Future 10.5670/oceanog.2016.32
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats 10.1021/acs.analchem.6b03456
High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter 10.3389/fmars.2017.00405
Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level 10.3389/fmicb.2016.00321
Spatiotemporal variability in seawater carbon chemistry for a coral reef flat in Kāne‘ohe Bay, Hawai‘i 10.1002/lno.11084
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages 10.1016/j.foodchem.2019.125290
Feature-based molecular networking in the GNPS analysis environment 10.1038/s41592-020-0933-6
Database-independent molecular formula annotation using Gibbs sampling through ZODIAC 10.1038/s42256-020-00234-6
Database-independent molecular formula annotation using Gibbs sampling through ZODIAC 10.1038/s42256-020-00259-x
Tam Dang
Dang Tam
ORCID: 0000-0002-3602-1917
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats 10.1021/acs.analchem.6b03456
Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking 10.1002/chem.201704074
Bioactive Peptide Natural Products as Lead Structures for Medicinal Use 10.1021/acs.accounts.7b00159
Feature-based molecular networking in the GNPS analysis environment 10.1038/s41592-020-0933-6
A community resource for paired genomic and metabolomic data mining 10.1038/s41589-020-00724-z
Chao Zhang
Zhang Chao
ORCID: 0000-0002-4222-9968
A Fast and Flexible Framework for Network-Assisted Genomic Association 10.1016/j.isci.2019.05.025
ASTRAL-III: Increased scalability and impacts of contracting low support branches 10.1007/978-3-319-67979-2_4
ASTRAL-III: Polynomial time species tree reconstruction from partially resolved gene trees 10.1186/s12859-018-2129-y
ASTRAL-MP: Scaling ASTRAL to very large datasets using randomization and parallelization 10.1093/bioinformatics/btz211
Mass spectrometry-based visualization of molecules associated with human habitats 10.1021/acs.analchem.6b03456
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy 10.1093/molbev/msaa139
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications 10.1038/s41467-020-18099-z
ASTRAL-Pro: quartet-based species tree inference despite paralogy 10.1101/2019.12.12.874727
Scalable Models of Antibody Evolution and Benchmarking of Clonal Tree Reconstruction Methods 10.1101/2020.09.17.302505
TAPER: Pinpointing errors in multiple sequence alignments despite varying rates of evolution 10.1101/2020.11.30.405589
TAPER: Pinpointing errors in multiple sequence alignments despite varying rates of evolution 10.1111/2041-210X.13696