Polyphenol identification based on systematic and robust high-resolution accurate mass spectrometry fragmentation
Justin J.J. van der Hooft Jacques Vervoort R.J. Bino Jules Beekwilder Ric de Vos
Jules Beekwilder
Beekwilder Jules
ORCID: 0000-0003-3238-4427
Methyl Perillate as a Highly Functionalized Natural Starting Material for Terephthalic Acid 10.1002/open.201700178
Engineering de novo anthocyanin production in Saccharomyces cerevisiae 10.1186/s12934-018-0951-6
Plant protease inhibitors: Functional evolution for defense 10.1007/978-1-4020-8182-8_11
Prunus Fruit Juices 10.1002/9781118929346.ch3
(+)-Valencene production in Nicotiana benthamiana is increased by down-regulation of competing pathways 10.1002/biot.201400288
Phage display selects for amylases with improved low pH starch-binding 10.1016/S0168-1656(02)00041-X
Affinity of Avr2 for tomato cysteine protease Rcr3 correlates with the Avr2-triggered Cf-2-mediated hypersensitive response 10.1111/j.1364-3703.2010.00647.x
Structural basis of the resistance of an insect carboxypeptides to plant protease inhibitors 10.1073/pnas.0505489102
Bioactive compounds in berries relevant to human health 10.1111/j.1753-4887.2009.00178.x
An oligonucleotide hybridization assay for the identification and enumeration of F-specific RNA phages in surface water 10.1111/j.1365-2672.1996.tb03207.x
A single arabidopsis gene encodes two differentially targeted geranylgeranyl diphosphate synthase isoforms 10.1104/pp.16.01392
Cloning, functional expression in Pichia pastoris, and purification of potato cystatin and multicystatin 10.1263/jbb.95.118
Globe artichoke callus as an alternative system for the production of dicaffeoylquinic acids 10.17660/ActaHortic.2012.961.33
Cytochrome P450s from Cynara cardunculus L. CYP71AV9 and CYP71BL5, catalyze distinct hydroxylations in the sesquiterpene lactone biosynthetic pathway 10.1016/j.plantsci.2014.03.007
Production of resveratrol in recombinant microorganisms 10.1128/AEM.00609-06
In vitro callogenesis and agrobacterium-mediated transformation of globe artichoke 10.17660/ActaHortic.2012.961.34
Secondary structure model for the first three domains of Qβ RNA. Control of A-protein synthesis 10.1006/jmbi.1996.0064
Genetic mapping and characterization of the globe artichoke (+)-germacrene A synthase gene, encoding the first dedicated enzyme for biosynthesis of the bitter sesquiterpene lactone cynaropicrin 10.1016/j.plantsci.2012.03.006
Self-assembled functional organic monolayers on oxide-free copper 10.1021/la200932w
A Review on the Effect of Drying on Antioxidant Potential of Fruits and Vegetables 10.1080/10408398.2015.1045969
A phagemid vector using the E. coli phage shock promoter facilitates phage display of toxic proteins 10.1016/S0378-1119(99)00013-X
Sour cherry (prunus cerasus L.) anthocyanins: Effects of juice processing on phenolic compounds and bioavailability 10.17660/ActaHortic.2014.1017.47
Caffeoylquinic acids biosynthesis and accumulation in cynara cardunculus: State of the art 10.17660/ActaHortic.2013.983.58
Expression of plant flavor genes in Lactococcus lactis 10.1128/AEM.01870-06
Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C 10.1038/s41598-017-00893-3
Stable recombinant alpaca antibodies for detection of Tulip virus X 10.1007/s10658-007-9265-y
Microbial production of natural raspberry ketone 10.1002/biot.200700076
Polycistronic expression of a β-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to β-ionone production 10.1016/j.jbiotec.2013.12.016
Changes in sour cherry (Prunus cerasus L.) antioxidants during nectar processing and in vitro gastrointestinal digestion 10.1016/j.jff.2013.05.008
Evaluation of glucosinolate variation in a collection of turnip (Brassica rapa) germplasm by the analysis of intact and desulfo glucosinolates 10.1021/jf400890p
A broad set of different llama antibodies specific for a 16 kda heat shock protein of mycobacterium tuberculosis 10.1371/journal.pone.0026754
Effect of dietary fiber (inulin) addition on phenolics and in vitro bioaccessibility of tomato sauce 10.1016/j.foodres.2017.12.050
Exploring the genomic traits of fungus-feeding bacterial genus Collimonas 10.1186/s12864-015-2289-3
The effect of uniform capture molecule orientation on biosensor sensitivity: Dependence on analyte properties 10.1016/j.bios.2012.07.027
Biotechnological production of limonene in microorganisms 10.1007/s00253-016-7337-7
De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae 10.1186/1475-2859-11-155
Identification and characterization of digestive serine proteases from inhibitor-resistant Helicoverpa zea larval midgut 10.1016/j.jchromb.2005.10.021
16 kDa Heat Shock Protein from Heat-Inactivated Mycobacterium tuberculosis Is a Homodimer - Suitability for Diagnostic Applications with Specific Llama VHH Monoclonals 10.1371/journal.pone.0064040
Effects of cysteine protease inhibitors on oviposition rate of the western flower thrips, Frankliniella occidentalis 10.1016/S0022-1910(02)00093-8
Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16 10.1093/jxb/err464
Polyphenol identification based on systematic and robust high-resolution accurate mass spectrometry fragmentation 10.1021/ac102546x
Control of anthocyanin and non-flavonoid compounds by anthocyanin-regulating MYB and bHLH transcription factors in Nicotiana benthamiana leaves 10.3389/fpls.2014.00519
GLYCOALKALOID METABOLISM1 is required for steroidal alkaloid glycosylation and prevention of phytotoxicity in tomato 10.1105/tpc.111.088732
Reconstitution of the costunolide biosynthetic pathway in yeast and Nicotiana benthamiana 10.1371/journal.pone.0023255
Genome-wide identification of bahd acyltransferases and in vivo characterization of HQT-like enzymes involved in caffeoylquinic acid synthesis in globe artichoke 10.3389/fpls.2016.01424
Characterization of potato proteinase inhibitor II reactive site mutants 10.1046/j.1432-1327.2000.01201.x
Stress-induced biosynthesis of dicaffeoylquinic acids in globe artichoke 10.1021/jf801653w
Antioxidants in raspberry: On-line analysis links antioxidant activity to a diversity of individual metabolites 10.1021/jf047880b
A chicory cytochrome P450 mono-oxygenase CYP71AV8 for the oxidation of (+)-valencene 10.1016/j.febslet.2010.11.040
Metabolic diversity in apple germplasm 10.1111/pbr.12134
Correlation of Rutin Accumulation with 3-O-Glucosyl Transferase and Phenylalanine Ammonia-lyase Activities During the Ripening of Tomato Fruit 10.1007/s11130-012-0321-1
Functional characterization of enzymes forming volatile esters from strawberry and banana 10.1104/pp.104.042580
Nicotiana benthamianaα-galactosidase A1.1 can functionally complement human α-galactosidase A deficiency associated with Fabry disease 10.1074/jbc.RA118.001774
Changes in antioxidant and metabolite profiles during production of tomato paste 10.1021/jf072990e
Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus 10.1128/AEM.02675-08
Metabolic engineering for the microbial production of carotenoids and related products with a focus on the rare C50 carotenoids 10.1007/s00253-014-5693-8
Functional expression on bacteriophage of the mustard trypsin inhibitor MTI-2 10.1006/bbrc.2000.4182
The effect of industrial food processing on potentially health-beneficial tomato antioxidants 10.1080/10408390903001503
Differences in acidity of apples are probably mainly caused by a malic acid transporter gene on LG16 10.1007/s11295-012-0571-y
Evaluation of the bioactive properties of avenanthramide analogs produced in recombinant yeast 10.1002/biof.1197
Interaction of lipophorin with the plasma membrane of locust flight muscles,Wechselwirkung von lipophorin mit der plasmamembran des heuschrecken-flugmuskels 10.1515/bchm3.1990.371.1.159
Cloning of the chrysanthemum UEP1 promoter and comparative expression in florets and leaves of Dendranthema grandiflora 10.1023/A:1016313924844
Biosynthesis and localization of parthenolide in glandular trichomes of feverfew (Tanacetum parthenium L. Schulz Bip.) 10.1016/j.phytochem.2011.04.021
The effect of isabelin, a sesquiterpene lactone from Ambrosia artemisiifolia on soil microorganisms and human pathogens 10.1093/femsle/fny001
Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes 10.1126/science.1240230
Evidence for a hydrogen-sink mechanism of (+)catechin-mediated emission reduction of the ruminant greenhouse gas methane 10.1007/s11306-013-0554-5
Engineering storage capacity for volatile sesquiterpenes in Nicotiana benthamiana leaves 10.1111/pbi.12933
Industrial processing versus home processing of tomato sauce: Effects on phenolics, flavonoids and in vitro bioaccessibility of antioxidants 10.1016/j.foodchem.2016.09.201
Boosting beneficial phytochemicals in vegetable crop plants 10.1079/PAVSNNR20083025
Antioxidants, phenolic compounds, and nutritional quality of different strawberry genotypes 10.1021/jf0719959
Fruit flavor formation in wild and cultivated strawberry 10.17660/ActaHortic.2005.682.24
The metabolite chemotype of Nicotiana benthamiana transiently expressing artemisinin biosynthetic pathway genes is a function of CYP71AV1 type and relative gene dosage 10.1111/nph.12274
Antibody orientation on biosensor surfaces: A minireview 10.1039/c2an36787d
The mQTL hotspot on linkage group 16 for phenolic compounds in apple fruits is probably the result of a leucoanthocyanidin reductase gene at that locus. 10.1186/1756-0500-5-618
Isoprenoid biosynthesis in Artemisia annua: Cloning and heterologous expression of a germacrene A synthase from a glandular trichome cDNA library 10.1016/j.abb.2006.02.026
Changes in polyphenol content during production of grape juice concentrate 10.1016/j.foodchem.2013.01.023
Identification of major loci and genomic regions controlling acid and volatile content in tomato fruit: implications for flavor improvement 10.1111/nph.14615
Industrial processing effects on phenolic compounds in sour cherry (Prunus cerasus L.) fruit 10.1016/j.foodres.2013.04.009
Transcription factor-mediated control of anthocyanin biosynthesis in vegetative tissues 10.1104/pp.17.01662
Investigating the transport dynamics of anthocyanins from unprocessed fruit and processed fruit juice from sour cherry (Prunus cerasus L.) across intestinal epithelial cells 10.1021/jf4032519
In vitro callus-induction in globe artichoke (Cynara cardunculus L. var. scolymus) as a system for the production of caffeoylquinic acids 10.1080/14620316.2013.11513003
Secondary Structure Model of the Last Two Domains of Single-stranded RNA Phage Qβ 10.1006/jmbi.1995.0189
Orientation of llama antibodies strongly increases sensitivity of biosensors 10.1016/j.bios.2014.04.017
Cloning and characterisation of a maize carotenoid cleavage dioxygenase (ZmCCD1) and its involvement in the biosynthesis of apocarotenoids with various roles in mutualistic and parasitic interactions 10.1007/s00425-008-0781-6
Identification and dietary relevance of antioxidants from raspberry 10.1002/biof.5520230404
Identification and recombinant expression of a novel chymotrypsin from Spodoptera exigua 10.1016/j.ibmb.2005.05.006
Non-smoky GLYCOSYLTRANSFERASE1 prevents the release of smoky aroma from tomato fruit 10.1105/tpc.113.114231
Selection by phage display of a variant mustard trypsin inhibitor toxic against aphids 10.1046/j.1365-313X.2003.01645.x
Capturing of the monoterpene olefin limonene produced in Saccharomyces cerevisiae 10.1002/yea.3038
Production of (+)-valencene in the mushroom-forming fungus S. commune 10.1007/s00253-014-5581-2
Properties of purified gut trypsin from Helicoverpa zea, adapted to proteinase inhibitors 10.1046/j.1432-1033.2003.03368.x
IdsA is the major geranylgeranyl pyrophosphate synthase involved in carotenogenesis in Corynebacterium glutamicum 10.1111/febs.13033
Isolation and mapping of a C3?H gene (CYP98A49) from globe artichoke, and its expression upon UV-C stress 10.1007/s00299-009-0695-1
Construction of a multifunctional enzyme complex via the strain-promoted azide-alkyne cycloaddition 10.1021/bc400021j
Fruit antioxidants during vinegar processing: Changes in content and in vitro bio-accessibility 10.3390/ijms17101658
The Flavonoid Pathway in Tomato Seedlings: Transcript Abundance and the Modeling of Metabolite Dynamics 10.1371/journal.pone.0068960
The effects of juice processing on black mulberry antioxidants 10.1016/j.foodchem.2014.11.151
Processing black mulberry into jam: effects on antioxidant potential and in vitro bioaccessibility 10.1002/jsfa.8152
Policy response to technological developments: The case of GURTs 10.1300/J153v04n01_07
Production of the sesquiterpene (+)-valencene by metabolically engineered Corynebacterium glutamicum 10.1016/j.jbiotec.2014.05.032
Accumulation of cynaropicrin in globe artichoke and localization of enzymes involved in its biosynthesis 10.1016/j.plantsci.2015.07.020
An O-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato 10.1111/tpj.12664
Response of the digestive system of Helicoverpa zea to ingestion of potato carboxypeptidase inhibitor and characterization of an uninhibited carboxypeptidase B 10.1016/j.ibmb.2006.05.010
Valencene synthase from the heartwood of Nootka cypress (Callitropsis nootkatensis) for biotechnological production of valencene 10.1111/pbi.12124
Co-evolution of insect proteases and plant protease inhibitors 10.2174/138920311796391115
Valencene oxidase CYP706M1 from Alaska cedar (Callitropsis nootkatensis) 10.1016/j.febslet.2014.01.061
Procyanidins in fruit from Sour cherry (Prunus cerasus) differ strongly in chainlength from those in Laurel cherry (Prunus lauracerasus) and Cornelian cherry (Cornus mas) 10.3233/BR-2011-015
Nicotiana benthamiana as a production platform for artemisinin precursors 10.1371/journal.pone.0014222
Toward Developing a Yeast Cell Factory for the Production of Prenylated Flavonoids 10.1021/acs.jafc.9b01367
A MYB Triad Controls Primary and Phenylpropanoid Metabolites for Pollen Coat Patterning 10.1104/pp.19.00009
Glucosinolate variability between turnip organs during development 10.1371/journal.pone.0217862
Silencing of germacrene A synthase genes reduces guaianolide oxalate content in Cichorium intybus L. 10.1080/21645698.2019.1681868
Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes 10.1093/jxb/eraa086
Plant Aromatic Prenyltransferases: Tools for Microbial Cell Factories 10.1016/j.tibtech.2020.02.006
Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases 10.1101/2020.07.28.224527
The transition of Rhodobacter sphaeroides into a microbial cell factory 10.1002/bit.27593
The santalene synthase from Cinnamomum camphora: Reconstruction of a sesquiterpene synthase from a monoterpene synthase 10.1016/j.abb.2020.108647
Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases 10.1371/journal.pcbi.1008197
Several geranylgeranyl diphosphate synthase isoforms supply metabolic substrates for carotenoid biosynthesis in tomato 10.1111/nph.17283
Justin van der Hooft
van der Hooft Justin / Justin J.J. van der Hooft
ORCID: 0000-0002-9340-5511
Structural elucidation of low abundant metabolites in complex sample matrices 10.1007/s11306-013-0519-8
Non-smoky GLYCOSYLTRANSFERASE1 prevents the release of smoky aroma from tomato fruit 10.1105/tpc.113.114231
Automatic chemical structure annotation of an LC-MSn based metabolic profile from green tea 10.1021/ac400861a
Substructure-based annotation of high-resolution multistage MSn spectral trees 10.1002/rcm.6364
Structural annotation and elucidation of conjugated phenolic compounds in black, green, and white tea extracts 10.1021/jf300297y
Structural elucidation and quantification of phenolic conjugates present in human urine after tea intake 10.1021/ac3017339
Spectral trees as a robust annotation tool in LC-MS based metabolomics 10.1007/s11306-011-0363-7
Metabolite identification using automated comparison of high-resolution multistage mass spectral trees 10.1021/ac2034216
Inhibitory activity of plumbagin produced by Drosera intermedia on food spoilage fungi 10.1002/jsfa.5522
A strategy for fast structural elucidation of metabolites in small volume plant extracts using automated MS-guided LC-MS-SPE-NMR 10.1002/mrc.2833
Thermal diffusivity of periderm from tomatoes of different maturity stages as determined by the concept of the frequency-domain open photoacoustic cell 10.1063/1.3530735
Polyphenol identification based on systematic and robust high-resolution accurate mass spectrometry fragmentation 10.1021/ac102546x
Iridoid and caffeoyl phenylethanoid glycosides of the endangered carnivorous plant Pinguicula lusitanica L. (Lentibulariaceae) 10.1016/j.bse.2009.05.003
Topic modeling for untargeted substructure exploration in metabolomics 10.1073/pnas.1608041113
Propagating annotations of molecular networks using in silico fragmentation 10.1371/journal.pcbi.1006089
Did a plant-herbivore arms race drive chemical diversity in Euphorbia? 10.1101/323014
Automatic Compound Annotation from Mass Spectrometry Data Using MAGMa. 10.5702/massspectrometry.S0033
Interactions of blacktea polyphenols with human gut microbiota: implications for gut and cardiovascular health 10.3945/ajcn.113.058263
Identification of a drimenol synthase and drimenol oxidase from Persicaria hydropiper, involved in the biosynthesis of insect deterrent drimanes 10.1111/tpj.13527
Enhanced Acylcarnitine Annotation in High-Resolution Mass Spectrometry Data: Fragmentation Analysis for the Classification and Annotation of Acylcarnitines 10.3389/fbioe.2015.00026
Rapid and sustained systemic circulation of conjugated gut microbiol catabolites after single-dose black tea extract consumption 10.1021/pr5001253
In Silico Prediction and Automatic LC–MSn Annotation of Green Tea Metabolites in Urine 10.1021/ac403875b
Unexpected differential metabolic responses of Campylobacter jejuni to the abundant presence of glutamate and fucose 10.1007/s11306-018-1438-5
Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1101/463620
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra 10.1101/491506
Accelerating metabolite identification in natural product research: toward an ideal combination of LC-HRMS/MS and NMR profiling, in silico databases and chemometrics 10.1021/acs.analchem.8b05112
Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages 10.1101/347716
Absorption, metabolism, distribution and excretion of (−)-epicatechin: A review of recent findings https://doi.org/10.1016/j.mam.2017.11.002
Metabolite Identification in Complex Mixtures Using Nuclear Magnetic Resonance Spectroscopy 10.1007/978-3-319-28275-6_6-2
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry 10.1093/bioinformatics/btx582
A comprehensive evaluation of the [2-14C](–)-epicatechin metabolome in rats https://doi.org/10.1016/j.freeradbiomed.2016.08.001
The food metabolome: a window over dietary exposure 10.3945/ajcn.113.076133
Human studies on the absorption, distribution, metabolism, and excretion of tea polyphenols 10.3945/ajcn.113.058958
Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics 10.1021/acs.analchem.7b01391
A community-driven paired data platform to accelerate natural product mining by combining structural information from genomes and metabolomes 10.18174/FAIRdata2018.16286
Implementations of the chemical structural and compositional similarity metric in R and Python 10.1101/546150
Comprehensive mass spectrometry-guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae 10.1111/tpj.14292
A genetical metabolomics approach for bioprospecting plant biosynthetic gene clusters 10.1186/s13104-019-4222-3
The Metabolomics Society—Current State of the Membership and Future Directions 10.3390/metabo9050089
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra 10.1039/C8FD00235E
MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools 10.1101/654459
Substantial extracellular metabolic differences found between phylogenetically closely related probiotic and pathogenic strains of Escherichia coli 10.3389/fmicb.2019.00252
Assessing specialized metabolite diversity in the cosmopolitan plant genus Euphorbia l. 10.3389/fpls.2019.00846
Molnetenhancer: Enhanced molecular networks by integrating metabolome mining and annotation tools 10.3390/metabo9070144
In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics 10.3390/metabo9100219
MIBiG 2.0: a repository for biosynthetic gene clusters of known function 10.1093/nar/gkz882
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages 10.1016/j.foodchem.2019.125290
The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery 10.1021/acscentsci.9b00806
Mass spectrometry searches using MASST 10.1038/s41587-019-0375-9
Assessing specialized metabolite diversity of Alnus species by a digitized LC–MS/MS data analysis workflow 10.1016/j.phytochem.2020.112292
Microbiome-derived carnitine mimics as previously unknown mediators of gut-brain axis communication 10.1126/sciadv.aax6328
Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree 10.1101/2020.05.04.077636
Linking genomics and metabolomics to chart specialized metabolic diversity 10.1039/D0CS00162G
Reproducible molecular networking of untargeted mass spectrometry data using GNPS 10.1038/s41596-020-0317-5
Decomposing metabolite set activity levels with PALS 10.1101/2020.06.07.138974
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions 10.1101/2020.06.12.148205
Phenylpropane as an Alternative Dearomatizing Unit of Indoles: Discovery of Inaequalisines A and B Using Substructure-Informed Molecular Networking 10.1021/acs.orglett.0c02153
matchms - processing and similarity evaluation of mass spectrometry data 10.1101/2020.08.06.239244
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships 10.1101/2020.08.11.245928
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters 10.1101/2020.08.17.240838
matchms - processing and similarity evaluation of mass spectrometry data. 10.21105/joss.02411
ReDU: a framework to find and reanalyze public mass spectrometry data 10.1038/s41592-020-0916-7
Feature-based molecular networking in the GNPS analysis environment 10.1038/s41592-020-0933-6
Rapid Development of Improved Data-dependent Acquisition Strategies 10.1101/2020.09.11.293092
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree 10.1038/s41589-020-00677-3
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data 10.1038/s41587-020-0700-3
The ant fungus garden acts as an external digestive system 10.1101/2020.11.18.389361
BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes 10.1101/2020.12.14.422671
BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters 10.1093/gigascience/giaa154
Veterinary trypanocidal benzoxaboroles are peptidase-activated prodrugs 10.1371/journal.ppat.1008932
Comparative Metabologenomics Analysis of Polar Actinomycetes 10.3390/md19020103
Ranking Metabolite Sets by Their Activity Levels 10.3390/metabo11020103
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships 10.1371/journal.pcbi.1008724
Rapid Development of Improved Data-Dependent Acquisition Strategies 10.1021/acs.analchem.0c03895
MS2DeepScore - a novel deep learning similarity measure for mass fragmentation spectrum comparisons 10.1101/2021.04.18.440324
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions 10.1371/journal.pcbi.1008920
Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview 10.3390/metabo11070445
Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden 10.1128/mSystems.00601-21
Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery 10.1128/mSystems.00726-21