Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016
Duah Alkam
Piroon Jenjaroenpun
Thidathip Wongsurawat
Zulema Udaondo
Preecha Patumcharoenpol
Michael Robeson
Dirk Haselow
William Mason
Intawat Nookaew
David Ussery
Se-Ran Jun
Thidathip Wongsurawat
Wongsurawat Thidathip
/ Tip
ORCID: 0000-0002-3659-2074
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016
10.1016/j.meegid.2019.103965
The Interaction between 30b-5p miRNA and MBNL1 mRNA is Involved in Vascular Smooth Muscle Cell Differentiation in Patients with Coronary Atherosclerosis
10.3390/ijms21010011
Systematic genome analysis of a novel arachidonic acid-producing strain uncovered unique metabolic traits in the production of acetyl-CoA-derived products in Mortierellale fungi
10.1016/j.gene.2020.144559
R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses.
10.1038/s41598-020-63101-9
Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing
10.1093/ofid/ofaa180
Decoding the epitranscriptional landscape from native RNA sequences
10.1093/nar/gkaa620
Detection and Discrimination of DNA Adducts Differing in Size, Regiochemistry, and Functional Group by Nanopore Sequencing
10.1021/acs.chemrestox.0c00202
Activation-induced cytidine deaminase localizes to G-quadruplex motifs at mutation hotspots in lymphoma
10.1093/narcan/zcaa029
Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing
10.1128/MRA.01109-20
RNA Sequencing Data Sets and Their Whole-Genome Sequence Assembly of Dengue Virus from Three Serial Passages in Vero Cells
10.1128/MRA.00145-21
Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Harboring Staphylococcal Cassette Chromosome mec Type IX, Isolated from a Fatal Bacteremic Pneumonia Case
10.1128/MRA.00616-21
Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon
10.3390/life11080862
Michael Robeson
Robeson Michael
/ Michael S. Robeson II
ORCID: 0000-0001-7119-6301
Email: MRobeson@uams.edu
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
10.1038/ismej.2008.127
Soil CO 2 flux and photoautotrophic community composition in high-elevation, ‘barren’ soil
10.1111/j.1462-2920.2008.01844.x
Insights and inferences about integron evolution from genomic data
10.1186/1471-2164-9-261
Global Distribution of Polaromonas Phylotypes - Evidence for a Highly Successful Dispersal Capacity
10.1371/journal.pone.0023742
Dispersal, niche breadth and population extinction: colonization ratios predict range size in North American dragonflies
10.1111/1365-2656.12181
Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers
10.1186/1472-6785-9-25
Characterizing microbial communities through space and time
10.1016/j.copbio.2011.11.017
Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments
10.1371/journal.pone.0102826
Functional shifts in unvegetated, perhumid, recently-deglaciated soils do not correlate with shifts in soil bacterial community composition
10.1007/s12275-009-0194-7
Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants
10.1111/mec.12821
PyCogent: a toolkit for making sense from sequence
10.1186/gb-2007-8-8-r171
Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil
10.1128/aem.00358-07
Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally
10.1073/pnas.1012678108
Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica
10.1098/rspb.2010.1254
Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania
10.3389/fmicb.2015.00253
Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes
10.1038/ismej.2015.60
Microbial community composition and diversity in Caspian Sea sediments
10.1093/femsec/fiu013
PanFP: pangenome-based functional profiles for microbial communities.
10.1186/s13104-015-1462-8
Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment
10.3389/fmicb.2015.01118
Seasonal Shifts in Diet and Gut Microbiota of the American Bison ( Bison bison )
10.1371/journal.pone.0142409
A native and an invasive dune grass share similar, patchily distributed, root-associated fungal communities
10.1016/j.funeco.2016.08.003
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
10.1128/aem.01285-16
Temporal Development of Gut Microbiota in Triclocarban Exposed Pregnant and Neonatal Rats
10.1038/srep33430
Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation
10.1021/acs.est.6b04751
Scattered far and wide: A broadly distributed temperate dune grass finds familiar fungal root associates in its invasive range
10.1016/j.soilbio.2017.05.007
Hypersaline sapropels act as hotspots for microbial dark matter
10.1038/s41598-017-06232-w
Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig ( Sus scrofa )
10.1002/ece3.3638
Interspecific Plant Interactions Reflected in Soil Bacterial Community Structure and Nitrogen Cycling in Primary Succession
10.3389/fmicb.2018.00128
Temporal dynamics of gut microbiota in triclocarban-exposed weaned rats
10.1007/s11356-018-1627-9
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016
10.1016/j.meegid.2019.103965
A phylogenetic model for the arrival of species into microbial communities and application to studies of the human microbiome
10.1101/685644
Gastrointestinal tract dysbiosis enhances distal tumor progression through suppression of leukocyte trafficking
10.1158/0008-5472.CAN-18-4108
Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species
10.1002/mbo3.973
Cervical Microbiome and Response to a Human Papillomavirus Therapeutic Vaccine for Treating High-Grade Cervical Squamous Intraepithelial Lesion
10.1177/1534735419893063
Using DNA Metabarcoding to Examine Wild Pig (Sus scrofa) Diets in a Subtropical Agro-Ecosystem
10.5070/v42811017
What can we learn from over 100,000 Escherichia coli genomes?
10.1101/708131
Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota
10.1101/2020.01.27.921619
A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome
10.1038/s41396-020-0613-7
Mixed ancestry from wild and domestic lineages contributes to the rapid expansion of invasive feral swine
10.1111/mec.15392
16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand
10.1128/MRA.00248-20
RESCRIPt
10.5281/ZENODO.3891931
RESCRIPt: Reproducible sequence taxonomy reference database management for the masses
10.1101/2020.10.05.326504
Characterization of the bacterial microbiomes of social amoebae and exploration of the roles of host and environment on microbiome composition
10.1111/1462-2920.15279
Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods
10.1016/j.csbj.2020.11.049
Multi-omics data integration considerations and study design for biological systems and disease
10.1039/D0MO00041H
Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
10.1038/s42003-020-01626-5
A comparison of approaches to scaffolding multiple regions along the 16S rRNA gene for improved resolution
10.1101/2021.03.23.436606
Cultivating the Bacterial Microbiota of Populus Roots
10.1128/mSystems.01306-20
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
10.1371/journal.pcbi.1009056
The complexities of inferring symbiont function: Paraburkholderia symbiont dynamics in social amoeba populations and its impact on the amoeba microbiome
10.1101/2021.08.21.457203
Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota
10.1371/journal.pone.0237556
Zulema Udaondo
Udaondo Zulema
ORCID: 0000-0003-3445-6842
Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli.
10.1111/1758-2229.12553
The pangenome of the genus Clostridium.
10.1111/1462-2920.13732
Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.
10.1128/genomea.01752-16
Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.
10.3389/fmicb.2016.02100
Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.
10.1111/1462-2920.13585
Pseudomonas putida as a platform for the synthesis of aromatic compounds.
10.1099/mic.0.000333
Specific Gene Loci of Clinical Pseudomonas putida Isolates.
10.1371/journal.pone.0147478
Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.
10.1128/genomea.00373-16
First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid.
10.1111/1751-7915.12333
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium.
10.1128/genomea.00904-15
Analysis of the core genome and pangenome of Pseudomonas putida.
10.1111/1462-2920.13015
Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.
10.1016/j.syapm.2015.07.002
Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics.
10.1111/1751-7915.12295
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida.
10.1093/femsre/fuv006
Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.
10.1111/1462-2920.12775
Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J.
10.1111/1758-2229.12245
Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440.
10.1111/1758-2229.12167
Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital.
10.1371/journal.pone.0081604
Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234.
10.1128/genomea.00496-13
Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.
10.1111/1751-7915.12061
Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1.
10.1111/1462-2920.12037
Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS.
10.1371/journal.pone.0039390
Evolution of antibiotic resistance, catabolic pathways and niche colonization.
10.1111/j.1751-7915.2012.00335.x
Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants.
10.1016/j.febslet.2012.07.031
Mining for novel antibiotics in the age of antimicrobial resistance.
10.1111/1751-7915.13662
Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries.
10.1111/1462-2920.15138
Two Cases of Vancomycin-Resistant Enterococcus faecium Bacteremia With Development of Daptomycin-Resistant Phenotype and its Detection Using Oxford Nanopore Sequencing.
10.1093/ofid/ofaa180
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide.
10.3389/fmicb.2020.00202
Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia.
10.1128/mra.01380-19
Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.
10.1016/j.meegid.2019.103965
Microbiomes as the new keystone for life sciences development.
10.1111/1751-7915.13424
Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.
10.1128/mra.00222-19
Towards a better metabolic engineering reference: the microbial chassis.
10.1111/1751-7915.13363
Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5.
10.1128/mra.00997-18
Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production.
10.1111/1751-7915.13269
Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators.
10.1111/1751-7915.13263
Fighting the enemy: one health approach against microbial resistance
10.1111/1751-7915.13587
Plasma Metabolomics in a Nonhuman Primate Model of Abdominal Radiation Exposure
10.3390/metabo11080540
Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon
10.3390/life11080862
