Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes
Aleti, G.
Sessitsch, A.
Brader, G.
Angela Sessitsch
Sessitsch Angela
ORCID: 0000-0003-0137-930X
Oligonucleotide microarrays in microbial diagnostics
10.1016/j.mib.2004.04.005
Microbial Population Structures in Soil Particle Size Fractions of a Long-Term Fertilizer Field Experiment
10.1128/AEM.67.9.4215-4224.2001
Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster
10.1128/AEM.00635-13
The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements
10.3389/fmicb.2015.00440
Response of organic matter pools and enzyme activities in particle size fractions to organic amendments in a long-term field experiment
10.1016/S0166-2481(02)80028-9
Impact of transgenic potatoes expressing anti-bacterial agents on bacterial endophytes is comparable with the effects of plant genotype, soil type and pathogen infection
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Culturable bacteria from Zn- and Cd-accumulating Salix caprea with differential effects on plant growth and heavy metal availability
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Hydrocarbon degradation and plant colonization by selected bacterial strains isolated from Italian ryegrass and birdsfoot trefoil
10.1111/j.1365-2672.2010.04768.x
Long-range surface plasmon-enhanced fluorescence spectroscopy biosensor for ultrasensitive detection of E. coli O157:H7
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Fungal and bacterial utilization of organic substrates depends on substrate complexity and N availability
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Soil Warming Effects on Beneficial Plant-Microbe Interactions
10.1002/9781118297674.ch98
Experimental warming effects on the microbial community of a temperate mountain forest soil
10.1016/j.soilbio.2011.03.005
Complete genome sequence of the plant growth-promoting endophyte burkholderia phytofirmans strain PsJN
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Spirosoma endophyticum sp. nov., isolated from Zn- and Cd-accumulating Salix caprea
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Endophytic Pseudomonas spp. populations of pathogen-infected potato plants analysed by 16S rDNA- and 16S rRNA-based denaturating gradient gel electrophoresis
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Ecology of Alkane-Degrading Bacteria and Their Interaction with the Plant
10.1002/9781118297674.ch92
Endophytic colonization of Vitis vinifera L. by plant growth-promoting bacterium Burkholderia sp. strain PsJN
10.1128/AEM.71.4.1685-1693.2005
Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants
10.3389/fpls.2013.00120
Phylogenetic and functional diversity of alkane degrading bacteria associated with Italian ryegrass (Lolium multiflorum) and Birdsfoot trefoil (Lotus corniculatus) in a petroleum oil-contaminated environment
10.1016/j.jhazmat.2010.08.067
Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers
10.1111/j.1462-2920.2004.00582.x
The hidden world within plants: Ecological and evolutionary considerations for defining functioning of microbial endophytes
10.1128/MMBR.00050-14
Propidium monoazide-quantitative polymerase chain reaction for viable Escherichia coli and Pseudomonas aeruginosa detection from abundant background microflora
10.1016/j.ab.2013.05.033
21st century agriculture: Integration of plant microbiomes for improved crop production and food security
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The endophyte Enterobacter sp. FD17: a maize growth enhancer selected based on rigorous testing of plant beneficial traits and colonization characteristics
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A cost-effective high-throughput microcosm system for studying nitrogen dynamics at the plant-microbe-soil interface
10.1007/s11104-008-9809-8
Combining microdilution with MicroResp™: Microbial substrate utilization, antimicrobial susceptibility and respiration
10.1016/j.mimet.2012.01.006
Plants control the seasonal dynamics of microbial N cycling in a beech forest soil by belowground C allocation
10.1890/i0012-9658-92-5-1036
The 125th anniversary of the first postulation of the soil origin of endophytic bacteria - a tribute to M.L.V. Galippe
10.1007/s11104-012-1204-9
Genome Analysis, Ecology, and Plant Growth Promotion of the Endophyte Burkholderia phytofirmans Strain PsJN
10.1002/9781118297674.ch81
Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes
10.1016/j.csbj.2015.03.003
Bacterial endophytes contribute to abiotic stress adaptation in pepper plants (Capsicum annuum L.)
10.1139/W07-082
The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice
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Interactions between accumulation of trace elements and macronutrients in Salix caprea after inoculation with rhizosphere microorganisms
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Bacterially induced weathering of ultramafic rock and its implications for phytoextraction
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Bacterial endophytes of the wildflower Crocus albiflorus analyzed by characterization of isolates and by a cultivation-independent approach
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Grapevine colonization by endophytic bacteria shifts secondary metabolism and suggests activation of defense pathways
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Characterization of endophytic bacteria from cucurbit fruits with potential benefits to agriculture in melons (Cucumis melo L.)
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Rice root-associated bacteria: Insights into community structures across10 cultivars
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Microbial processes and community composition in the rhizosphere of European beech - The influence of plant C exudates
10.1016/j.soilbio.2010.11.022
Methylobacterium-Induced Endophyte Community Changes Correspond with Protection of Plants against Pathogen Attack
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Microbial ecology of biogeochemical interfaces - diversity, structure, and function of microhabitats in soil
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Interkingdom transfer of the acne-causing agent, propionibacterium acnes, from human to grapevine
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Microarray analysis reveals the actual specificity of enrichment media used for food safety assessment
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Cadmium-tolerant bacteria induce metal stress tolerance in cereals
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The role of plant-associated bacteria in the mobilization and phytoextraction of trace elements in contaminated soils
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Micro-scale distribution of microorganisms and microbial enzyme activities in a soil with long-term organic amendment
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High-sensitivity, polymerase chain reaction-free detection of microorganisms and their functional genes using 70-mer oligonucleotide diagnostic microarray
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Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, St. Jacobs, Ontario, Canada
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Incidence and microbiology of salad-borne disease
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Persistence and spread of Salmonella enterica serovar Weltevreden in soil and on spinach plants
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Characterization of Ni-tolerant methylobacteria associated with the hyperaccumulating plant Thlaspi goesingense and description of Methylobacterium goesingense sp. nov.
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Measurement of the competitiveness index of Rhizobium tropici strain CIAT899 derivatives marked with the gusA gene
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Deciphering the niches of colonisation of Vitis vinifera L. by the esca-associated fungus Phaeoacremonium aleophilum using a gfp marked strain and cutting systems
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Analysis of Phaseolus-Rhizobium interactions in a subsistence farming system
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Hydrocarbon degradation, plant colonization and gene expression of alkane degradation genes by endophytic Enterobacter ludwigii strains
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Grazing affects methanotroph activity and diversity in an alpine meadow soil
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Cr-resistant rhizo-and endophytic bacteria associated with Prosopis juliflora and their potential as phytoremediation enhancing agents in metal-degraded soils
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Characterization of two bacterial hydroxynitrile lyases with high similarity to cupin superfamily proteins
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Community profiling and gene expression of fungal assimilatory nitrate reductases in agricultural soil
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Activity of microorganisms in the rhizosphere of herbicide treated and untreated transgenic glufosinate-tolerant and wildtype oilseed rape grown in containment
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Advances in elucidating beneficial interactions between plants, soil, and bacteria
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Diagnostic microbial microarrays in soil ecology
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Seasonal variation in functional properties of microbial communities in beech forest soil
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Phage-type specific markers identified by Diversity Arrays Technology (DArT) analysis of Salmonella enterica ssp. enterica serovars Enteritidis and Typhimurium
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Cultivation-independent population analysis of bacterial endophytes in three potato varieties based on eubacterial and Actinomycetes-specific PCR of 16S rRNA genes
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Nitrifiers and denitrifiers respond rapidly to changed moisture and increasing temperature in a pristine forest soil
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Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp. FD17
10.1016/j.envexpbot.2013.09.014
DNA-based stable isotope probing enables the identification of active bacterial endophytes in potatoes
10.1111/j.1469-8137.2008.02744.x
Bacterial rhizosphere populations of black poplar and herbal plants to be used for phytoremediation of diesel fuel
10.1016/S0038-0717(02)00202-X
Endophytic bacterial communities of field-grown potato plants and their plant-growth-promoting and antagonistic abilities
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Improved group-specific primers based on the full SILVA 16S rRNA gene reference database
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Analysis of methanotroph community composition using a pmoA-based microbial diagnostic microarray
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Diversity of abundant bacteria in subsurface vertical flow constructed wetlands
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Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization
10.1016/j.soilbio.2009.11.024
Potential of rhizosphere bacteria for improving rhizobium -legume symbiosis
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Molecular diversity in the bacterial community and the fluorescent pseudomonads group in natural and chlorobenzoate-stressed peat-forest soil
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Contrasting response of two forest soils to nitrogen input: Rapidly altered NO and N2O emissions and nirK abundance
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Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil
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Metagenomic analysis of the 1-aminocyclopropane-1-carboxylate deaminase gene (acdS) operon of an uncultured bacterial endophyte colonizing Solanum tuberosum L
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RNA isolation from soil for bacterial community and functional analysis: Evaluation of different extraction and soil conservation protocols
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Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties
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Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils
10.1128/AEM.70.9.5057-5065.2004
Erratum to: Grapevine colonization by endophytic bacteria shifts secondary metabolism and suggests activation of defense pathways
10.1007/s11104-015-2693-0
Endophytic bacteria: Prospects and applications for the phytoremediation of organic pollutants
10.1016/j.chemosphere.2014.06.078
SPR bacterial pathogen biosensor: The importance of fluidic conditions and probing depth
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Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica
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Remarkable Recovery and Colonization Behaviour of Methane Oxidizing Bacteria in Soil After Disturbance Is Controlled by Methane Source Only
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Ochrobactrum rhizosphaerae sp. nov. and Ochrobactrum thiophenivorans sp. nov., isolated from the environment
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Structural characteristics and plant-beneficial effects of bacteria colonizing the shoots of field grown conventional and genetically modified T4-lysozyme producing potatoes
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Endophytic nifH gene diversity in African sweet potato
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Use of marker genes in competition studies of Rhizobium
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Expression of alkane monooxygenase (alkB) genes by plant-associated bacteria in the rhizosphere and endosphere of Italian ryegrass (Lolium multiflorum L.) grown in diesel contaminated soil
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Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization
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Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment
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The Role of Microbial Inoculants in Integrated Crop Management Systems
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Transcriptome profiling of the endophyte burkholderia phytofirmans psjn indicates sensing of the plant environment and drought stress
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Effects of transgenic glufosinate-tolerant oilseed rape (Brassica napus) and the associated herbicide application on eubacterial and Pseudomonas communities in the rhizosphere
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Use of beneficial bacteria and their secondary metabolites to control grapevine pathogen diseases
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Greenhouse gas fluxes respond to different N fertilizer types due to altered plant-soil-microbe interactions
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Antimicrobial drimane sesquiterpenes and their effect on endophyte communities in the medical tree Warburgia ugandensis
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Rapid and dissimilar response of ammonia oxidizing archaea and bacteria to nitrogen and water amendment in two temperate forest soils
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Rhizosphere bacteria affect growth and metal uptake of heavy metal accumulating willows
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Nitrogen fixation and nodule occupancy by native strains of Rhizobium on different cultivars of common bean (Phaseolus vulgaris L.)
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Endophytic colonization of Vitis vinifera L. by Burkholderia phytofirmans strain PsJN: From the rhizosphere to inflorescence tissues
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Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing
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DNA-Based Stable Isotope Probing for Identifying Active Bacterial Endophytes in Potato
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A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens
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Biocontrol and plant growth promoting properties of Streptomyces mutabilis strain IA1 isolated from a Saharan soil on wheat seedlings and visualization of its niches of colonization
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Visualization of Niches of Colonization of Firmicutes with Bacillus spp. in the Rhizosphere, Rhizoplane, and Endorhiza of Grapevine Plants at Flowering Stage of Development by FISH Microscopy
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Genetically modified Bt maize lines containing cry3Bb1, cry1A105 or cry1Ab2 do not affect the structure and functioning of root-associated endophyte communities
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Development of an oligonucleotide microarray method for Salmonella serotyping
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Back to the future of soil metagenomics
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Development and validation of a diagnostic microbial microarray for methanotrophs
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Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis
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mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray
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Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest
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Chilling and cultivar type affect the diversity of bacterial endophytes colonizing sweet pepper (Capsicum anuum L.)
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Climate change effects on beneficial plant-microorganism interactions
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Evaluation of quantitative PCR combined with PMA treatment for molecular assessment of microbial water quality
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L-Tryptophan-dependent biosynthesis of indole-3-acetic acid (IAA) improves plant growth and colonization of maize by Burkholderia phytofirmans PsJN
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Metabolic potential of endophytic bacteria
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The inoculation method affects colonization and performance of bacterial inoculant strains in the phytoremediation of soil contaminated with diesel oil
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Effects of level and quality of organic matter input on carbon storage and biological activity in soil: Synthesis of a long-term experiment
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Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure
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MLST-v, multilocus sequence typing based on virulence genes, for molecular typing of Salmonella enterica subsp. enterica serovars
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Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense
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Combined amendment of immobilizers and the plant growth-promoting strain Burkholderia phytofirmans PsJN favours plant growth and reduces heavy metal uptake
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Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica
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Effect of different heterotrophic plate count methods on the estimation of the composition of the culturable microbial community
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Diversity and community structure of culturable Bacillus spp. populations in the rhizospheres of transgenic potatoes expressing the lytic peptide cecropin B
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16S rRNA based T-RFLP analysis of methane oxidising bacteria - Assessment, critical evaluation of methodology performance and application for landfill site cover soils
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Microbial diagnostic microarray for food- and water-borne pathogens
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Drought stress amelioration in wheat through inoculation with Burkholderia phytofirmans strain PsJN
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Soil type affects plant colonization, activity and catabolic gene expression of inoculated bacterial strains during phytoremediation of diesel
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Heritability and Functional Importance of the Setaria viridis Bacterial Seed Microbiome
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miCROPe 2019 – emerging research priorities towards microbe-assisted crop production
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The plant endosphere world – bacterial life within plants
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Towards a unified data infrastructure to support European and global microbiome research: a call to action
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Microbiome innovations for a sustainable future
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Potato Root-Associated Microbiomes Adapt to Combined Water and Nutrient Limitation and have a Plant Genotype-Specific Role for Plant Stress Mitigation
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Editorial to the Thematic Topic “Towards a more sustainable agriculture through managing soil microbiomes”
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Gajender Aleti
Aleti Gajender
ORCID: 0000-0002-1867-9758
Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease
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Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage
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Microbe and plant assisted-remediation of organic xenobiotics and its enhancement by genetically modified organisms and recombinant technology: A review
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The draft genome sequence of Paenibacillus polymyxa strain CCI-25 encompasses high potential for secondary metabolite production
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Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression
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Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis
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Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
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Qualitative analysis of biosurfactants from Bacillus species exhibiting antifungal activity
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Surfactin variants mediate species-specific biofilm formation and root colonization in Bacillus
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Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults
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Correction: Qualitative analysis of biosurfactants from Bacillus species exhibiting antifungal activity(PLoS ONE (2018) 13:6 (e0198107) DOI: 10.1371/journal.pone.0198107)
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Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes
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A community resource for paired genomic and metabolomic data mining.
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Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.
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ReDU: a framework to find and reanalyze public mass spectrometry data.
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Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides
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