Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma
Microbial ecology, 2020-11-6
Yi-Han Lin
Lin Yi-Han
ORCID: 0000-0002-0469-8069
The initial steps in agrobacterium tumefaciens pathogenesis: Chemical biology of host recognition
10.1007/978-0-387-72290-0_6
RavN is a member of a previously unrecognized group of Legionella pneumophila E3 ubiquitin ligases
10.1371/journal.ppat.1006897
Host cell-catalyzed S-palmitoylation mediates Golgi targeting of the legionella ubiquitin ligase GobX
10.1074/jbc.M115.637397
Exploitation of the host cell ubiquitin machinery by microbial effector proteins
10.1242/jcs.188482
The receiver domain of hybrid histidine kinase virA: An enhancing factor for vir gene expression in Agrobacterium tumefaciens
10.1128/JB.01007-09
Role of the VirA histidine autokinase of Agrobacterium tumefaciens in the initial steps of pathogenesis
10.3389/fpls.2014.00195
Structural characterization of sialic acid synthase by electrospray mass spectrometry - A tetrameric enzyme composed of dimeric dimers
10.1016/j.jasms.2004.11.016
A Rhizobium radiobacter Histidine Kinase Can Employ Both Boolean and and or Logic Gates to Initiate Pathogenesis
10.1002/cbic.201500334
Capturing the VirA/VirG TCS of Agrobacterium tumefaciens
10.1007/978-0-387-78885-2_11
Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery
10.1021/acs.jproteome.9b00037
Netome: The Molecular Characterization of Neutrophil Extracellular Traps (NETs)
10.1101/2020.05.18.102772
Structural insight into the membrane targeting domain of the Legionella deAMPylase SidD
10.1371/journal.ppat.1008734
Global Proteome and Phosphoproteome Characterization of Sepsis-induced Kidney Injury
10.1074/mcp.ra120.002235
Mapping Reaction-Diffusion Networks at the Plant Wound Site With Pathogens
10.3389/fpls.2020.01074
Nutritional Immunity and Antibiotic Drug Treatments Influence Microbial Composition but Fail to Eliminate Urethral Catheter Biofilms in Recurrently Catheterized Patients
10.1101/637819
Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma
10.1007/s00248-020-01596-5
Predictive Signatures of 19 Antibiotic-Induced Escherichia coli Proteomes
10.1021/acsinfecdis.0c00196
Influenza Causes MLKL-Driven Cardiac Proteome Remodeling During Convalescence
10.1161/CIRCRESAHA.120.318511
Lab-on-a-Filter Techniques for Economical, Effective, and Flexible Proteome Analysis.
10.1007/978-1-0716-1186-9_3
Kinetic multi-omic analysis of responses to SARS-CoV-2 infection in a model of severe COVID-19
10.1128/jvi.01010-21
Kelvin Jens Moncera
Moncera Kelvin Jens
/ Kelvin Moncera
ORCID: 0000-0002-9907-0687
Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.
10.1007/s00248-020-01596-5
Characterizing Microbial Signatures on Sculptures and Paintings of Similar Provenance.
10.1007/s00248-020-01504-x
Vertical transmission of gut microbiome and antimicrobial resistance genes in infants exposed to antibiotics at birth.
10.1093/infdis/jiaa155
Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.
10.1007/s00248-019-01448-x
Gastro-intestinal and oral microbiome signatures associated with healthy aging.
10.1007/s11357-019-00098-8
Study of the impact of long-duration space missions at the International Space Station on the astronaut microbiome.
10.1038/s41598-019-46303-8
Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice.
10.1080/19490976.2019.1595300
Microbial metagenome of urinary tract infection.
10.1038/s41598-018-22660-8
Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid.
10.12688/f1000research.11629.1
Gajender Aleti
Aleti Gajender
ORCID: 0000-0002-1867-9758
Identification of the Bacterial Biosynthetic Gene Clusters of the Oral Microbiome Illuminates the Unexplored Social Language of Bacteria during Health and Disease
10.1128/mbio.00321-19
Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage
10.1038/s41598-017-02314-x
Microbe and plant assisted-remediation of organic xenobiotics and its enhancement by genetically modified organisms and recombinant technology: A review
10.1016/j.scitotenv.2018.02.037
The draft genome sequence of Paenibacillus polymyxa strain CCI-25 encompasses high potential for secondary metabolite production
10.1128/genomeA.00366-16
Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression
10.1016/j.ydbio.2011.04.030
Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis
10.3389/fimmu.2019.02602
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
10.1016/j.foodchem.2019.125290
Qualitative analysis of biosurfactants from Bacillus species exhibiting antifungal activity
10.1371/journal.pone.0198107
Surfactin variants mediate species-specific biofilm formation and root colonization in Bacillus
10.1111/1462-2920.13405
Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults
10.1016/j.bbi.2020.02.004
Correction: Qualitative analysis of biosurfactants from Bacillus species exhibiting antifungal activity(PLoS ONE (2018) 13:6 (e0198107) DOI: 10.1371/journal.pone.0198107)
10.1371/journal.pone.0201624
Genome mining: Prediction of lipopeptides and polyketides from Bacillus and related Firmicutes
10.1016/j.csbj.2015.03.003
A community resource for paired genomic and metabolomic data mining.
10.1038/s41589-020-00724-z
Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.
10.1007/s00248-020-01596-5
ReDU: a framework to find and reanalyze public mass spectrometry data.
10.1038/s41592-020-0916-7
Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides
10.1101/2021.08.10.21255754
Yanbao Yu
Yu Yanbao
ORCID: 0000-0003-2994-1974
Proteomes of pathogenic Escherichia coli/Shigella group surveyed in their host environments.
10.1586/14789450.2014.935342
Urine Sample Preparation in 96-Well Filter Plates for Quantitative Clinical Proteomics
10.1021/ac5008317
Cell Cycle-Regulated Protein Abundance Changes in Synchronously Proliferating HeLa Cells Include Regulation of Pre-mRNA Splicing Proteins
10.1371/journal.pone.0058456
Protein phosphatase 2A catalytic subunit alpha plays a MyD88-dependent, central role in the gene-specific regulation of endotoxin tolerance.
10.1016/j.celrep.2013.01.029
Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions
10.1186/1471-2164-14-141
BCLAF1 is a radiation-induced H2AX-interacting partner involved in gamma H2AX-mediated regulation of apoptosis and DNA repair
10.1038/cddis.2012.76
GOFAST: An Integrated Approach for Efficient and Comprehensive Membrane Proteome Analysis
10.1021/ac300134e
Landscape of transcription in human cells
10.1038/nature11233
Long noncoding RNAs are rarely translated in two human cell lines
10.1101/gr.134767.111
The Mitochondrial Proteins NLRX1 and TUFM Form a Complex that Regulates Type I Interferon and Autophagy
10.1016/j.immuni.2012.03.025
An optimized magnetite microparticle-based phosphopeptide enrichment strategy for identifying multiple phosphorylation sites in an immunoprecipitated protein
10.1016/j.ab.2010.08.002
Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics
10.1002/pmic.201000202
Dissection of DEN-Induced Platelet Proteome Changes Reveals the Progressively Dys-Regulated Pathways Indicative of Hepatocarcinogenesis
10.1021/pr100679t
Global analysis of the rat and human platelet proteome - the molecular blueprint for illustrating multi-functional platelets and cross-species function evolution
10.1002/pmic.200900271
Analysis of the protein complex associated with 14-3-3 epsilon by a deuterated-leucine labeling quantitative proteomics strategy
10.1016/j.jchromb.2009.01.023
Comprehensive profiling of metastasis-related proteins in paired hepatocellular carcinoma cells with different metastasis potentials
10.1002/prca.200780131
In Vivo Profiling Endogenous Interactions with Knock-Out in Mammalian Cells
10.1021/ac802161d
Modifications of Superoxide Dismutase (SOD1) in Human Erythrocytes A POSSIBLE ROLE IN AMYOTROPHIC LATERAL SCLEROSIS
10.1074/jbc.M809687200
Modulation of TLR Signaling by Multiple MyD88-Interacting Partners Including Leucine-Rich Repeat Fli-I-Interacting Proteins
10.4049/jimmunol.0802260
Proteomic dissection of agonist-specific TLR-mediated inflammatory responses on macrophages at subcellular resolution
10.1021/pr800021a
Amino acid-coded tagging approaches in quantitative proteomics
10.1586/14789450.4.1.25
Diagnosing inflammation and infection in the urinary system via proteomics
10.1186/s12967-015-0475-3
Similar Neutrophil-Driven Inflammatory and Antibacterial Responses in Elderly Patients with Symptomatic and Asymptomatic Bacteriuria
10.1128/IAI.00745-15
Urine Sample Preparation in 96-well Filter Plates to Characterize Inflammatory and Infectious Diseases of the Urinary Tract
10.1007/978-94-017-9523-4_8
Urinary pellet sample preparation for shotgun proteomic analysis of microbial infection and host-pathogen interactions.
10.1007/978-1-4939-2550-6_6
A spinnable and automatable StageTip for high throughput peptide desalting and proteomics
10.1038/protex.2014.033
A Method to Generate and Analyze Modified Myristoylated Proteins
10.1002/cbic.201600608
Hepatitis B Virus X Protein Promotes Degradation of SMC5/6 to Enhance HBV Replication.
10.1016/j.celrep.2016.08.026
The antiobesity factor WDTC1 suppresses adipogenesis via the CRL4WDTC1 E3 ligase.
10.15252/embr.201540500
Serum quantitative proteomic analysis reveals potential zinc-associated biomarkers for nonbacterial prostatitis.
10.1002/pros.23028
CRL4(VprBP) E3 ligase promotes monoubiquitylation and chromatin binding of TET dioxygenases.
10.1016/j.molcel.2014.12.002
A chromatin activity-based chemoproteomic approach reveals a transcriptional repressome for gene-specific silencing.
10.1038/ncomms6733
The 3M complex maintains microtubule and genome integrity.
10.1016/j.molcel.2014.03.047
Incorporation of a fluorous diazirine group into phosphatidylinositol 4,5-bisphosphate to illustrate its interaction with ADP-ribosylation factor 1.
10.1039/c2ob25276g
Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract
10.7150/thno.16086
Characterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections
10.1371/journal.ppat.1006151
Quick 96FASP for high throughput quantitative proteome analysis
https://doi.org/10.1016/j.jprot.2017.06.019
Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function.
10.7150/thno.19679
Microbial Metagenome Of Urinary Tract Infection
10.1101/134320
S-Trap, an Ultrafast Sample-Preparation Approach for Shotgun Proteomics
10.1021/acs.jproteome.8b00505
ProteoStorm: An Ultrafast Metaproteomics Database Search Framework
https://doi.org/10.1016/j.cels.2018.08.009
Actinobaculum massiliense Proteome Profiled in Polymicrobial Urethral Catheter Biofilms
10.3390/proteomes6040052
Self-assembled STrap for global proteomics and salivary biomarker discovery
10.1021/acs.jproteome.9b00037
Protein signatures from blood plasma and urine suggest changes in vascular function and IL-12 signaling in elderly with a history of chronic diseases compared with an age-matched healthy cohort.
10.1007/s11357-020-00269-y
Global proteome and phosphoproteome characterization of sepsis-induced kidney injury.
10.1074/mcp.ra120.002235
Predictive Signatures of 19 Antibiotic-Induced Escherichia coli Proteomes.
10.1021/acsinfecdis.0c00196
Impaired plasma membrane localization of ubiquitin ligase complex underlies 3-M syndrome development.
10.1172/jci129107
Using Proteomics to Identify Inflammation During Urinary Tract Infection.
10.1007/978-1-4939-9601-8_22
Detection of Neutrophil Extracellular Traps in Urine.
10.1007/978-1-4939-9601-8_21
Influenza Causes MLKL-Driven Cardiac Proteome Remodeling During Convalescence.
10.1161/circresaha.120.318511
Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation.
10.1186/s12953-020-00165-5
Oral Microbial Species and Virulence Factors Associated with Oral Squamous Cell Carcinoma.
10.1007/s00248-020-01596-5
Lab-on-a-Filter Techniques for Economical, Effective, and Flexible Proteome Analysis.
10.1007/978-1-0716-1186-9_3
